Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0685800-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:29121890:29124939:1 gene:Os07g0685800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Short-chain dehydrogenase/reductase SDR domain containing protein. (Os07t0685800-01)
Sequence

ATGGCCGCCGCCGCCGCCGCCGCGAGCTACTCATCTACTTCTTGGAGAGTCCGACCCGGC
CTAACCCCATTTCGCTCCCCTCTCCAGCCACACCCGCAGGGACGACTCCAGCGGATAGCC
ATCTTCGCCACCCGCATCCGCATCGCAACACCCTCGGCGGCGATGCAGTCGTCCTCAACG
CGGCACAGGCTTGAGGCAGTGAATCATGACCATGAAACAATACCTGAAAGGCTTGCAGTA
GTCACTGGTGGAAACAGAGGGATTGGCCTAGAAGTGTGCCGCCAGCTTGCCCTCCAAGGT
GTGACAGTCATTCTGACAGCAAGAGACGAGAAAAGGGGGAAAGATGCTGTTGAGTCCCTT
TGCCATGAATCTAACCTCTCCAACATAATCTTCCATCAACTTGATATCCTAGATGGTAAC
AGTCGTGCCTCATTGGCCCGATACATCAACAGTAGATTTGGAAAGCTTGACATCTTGGTG
AACAATGCAGGTGTTGGAGGGGTTGCAGTAGACCAGGATGGCCTGAGAGCTCTCAACATT
GATCCCAGGGTTTGGCTATCCGGCAAAGCAGTCAATCTGATCCAATCAGTAATTGTACAA
ACATACGACGAGGCAGTAAAATGCCTCAACACCAACTATTATGGATTGAAATGGATAACA
GAAGCTCTCCTGCCGCTACTGAAACAATCGCCGTCAGGAGCAAGAATTGTTAACACCACC
TCTCTTCGGTCAGAGTTGAAGAGAATTCCCAATGAGAAGCTCCGCGACGAGCTGCGCAAC
ATCGACATCTGGGACGAAGCACGGATAGAAGCGATGCTGAACGAGTTCTTGCTTGACCTG
AAGAACGAACGGCTTGAGGAGGCAGGATGGCCAACAATGCTGCCGGCTTACAGCATGTCC
AAGACCGTCGTCAACCTCTACACCAGGATCCTGGCCAAGAGGCACCCGGAGATGCGCATC
AACTGCGTTCACCCTGGATTTGTCAACACGGAGATCAACTGGAATACAGGGATCATCCCT
CCTGAAGAAGGCGCGAGAGGTGCGGTCAAGGCAGCTCTGCTCCCTCAGGATGGACCAACC
GGTTGCTACTTTGATCAAACAGAGTTGGGTGAAGCTTGGTAG

Peptide Sequence

PEP ID

Os07t0685800-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:29121890:29124939:1 gene:Os07g0685800 transcript:Os07t0685800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Short-chain dehydrogenase/reductase SDR domain containing protein. (Os07t0685800-01)
Sequence

MAAAAAAASYSSTSWRVRPGLTPFRSPLQPHPQGRLQRIAIFATRIRIATPSAAMQSSST
RHRLEAVNHDHETIPERLAVVTGGNRGIGLEVCRQLALQGVTVILTARDEKRGKDAVESL
CHESNLSNIIFHQLDILDGNSRASLARYINSRFGKLDILVNNAGVGGVAVDQDGLRALNI
DPRVWLSGKAVNLIQSVIVQTYDEAVKCLNTNYYGLKWITEALLPLLKQSPSGARIVNTT
SLRSELKRIPNEKLRDELRNIDIWDEARIEAMLNEFLLDLKNERLEEAGWPTMLPAYSMS
KTVVNLYTRILAKRHPEMRINCVHPGFVNTEINWNTGIIPPEEGARGAVKAALLPQDGPT
GCYFDQTELGEAW

Transcript Sequence

Transcript ID

Os07t0685800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:29121890:29124939:1 gene:Os07g0685800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Short-chain dehydrogenase/reductase SDR domain containing protein. (Os07t0685800-01)
Sequence

CTCTCACGCGGTTATCTATCCAAAGCTGAAGGTGCGATGGCCGCCGCCGCCGCCGCCGCG
AGCTACTCATCTACTTCTTGGAGAGTCCGACCCGGCCTAACCCCATTTCGCTCCCCTCTC
CAGCCACACCCGCAGGGACGACTCCAGCGGATAGCCATCTTCGCCACCCGCATCCGCATC
GCAACACCCTCGGCGGCGATGCAGTCGTCCTCAACGCGGCACAGGCTTGAGGCAGTGAAT
CATGACCATGAAACAATACCTGAAAGGCTTGCAGTAGTCACTGGTGGAAACAGAGGGATT
GGCCTAGAAGTGTGCCGCCAGCTTGCCCTCCAAGGTGTGACAGTCATTCTGACAGCAAGA
GACGAGAAAAGGGGGAAAGATGCTGTTGAGTCCCTTTGCCATGAATCTAACCTCTCCAAC
ATAATCTTCCATCAACTTGATATCCTAGATGGTAACAGTCGTGCCTCATTGGCCCGATAC
ATCAACAGTAGATTTGGAAAGCTTGACATCTTGGTGAACAATGCAGGTGTTGGAGGGGTT
GCAGTAGACCAGGATGGCCTGAGAGCTCTCAACATTGATCCCAGGGTTTGGCTATCCGGC
AAAGCAGTCAATCTGATCCAATCAGTAATTGTACAAACATACGACGAGGCAGTAAAATGC
CTCAACACCAACTATTATGGATTGAAATGGATAACAGAAGCTCTCCTGCCGCTACTGAAA
CAATCGCCGTCAGGAGCAAGAATTGTTAACACCACCTCTCTTCGGTCAGAGTTGAAGAGA
ATTCCCAATGAGAAGCTCCGCGACGAGCTGCGCAACATCGACATCTGGGACGAAGCACGG
ATAGAAGCGATGCTGAACGAGTTCTTGCTTGACCTGAAGAACGAACGGCTTGAGGAGGCA
GGATGGCCAACAATGCTGCCGGCTTACAGCATGTCCAAGACCGTCGTCAACCTCTACACC
AGGATCCTGGCCAAGAGGCACCCGGAGATGCGCATCAACTGCGTTCACCCTGGATTTGTC
AACACGGAGATCAACTGGAATACAGGGATCATCCCTCCTGAAGAAGGCGCGAGAGGTGCG
GTCAAGGCAGCTCTGCTCCCTCAGGATGGACCAACCGGTTGCTACTTTGATCAAACAGAG
TTGGGTGAAGCTTGGTAGTAAAATATAGCATTATAAAATTATTAAGCATGTTTAATAATC
ATCCTTCCATGCTAGCTTAGCGATCAGAGCTGTGTAAACATATACCACTACATGATTCAT
GGATGTTTCACAGACTAAATTTGTTATGCAAGGATGCTTAATAATCAACC