Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0682400-03
CDS Infomation	cds chromosome:IRGSP-1.0:7:28928736:28932713:-1 gene:Os07g0682400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 53 description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0682400-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0682400-02);Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0682400-03)
Sequence	ATGGACGCCTACGAGGCGACCAAGGTGGTGTTCTCGCGGATCCAGGCGCTCGACCCGGAC CACGCAGCCAAGATCATGGGCTTCCTCCTCATCCAGGACCATGGCGAGAAGGAGATGATA CGCCTCGCTTTCGGCCCCGAGGCGCTGCTCCACACCGTCATGGCCAAGGCCAGGAAGGAG CTCGGCCTCCTCCCGGCGTCCGGGCCCGGGACGCCCACCTCCGTGGCGGCGGCCGCGGCC GCCGCCCACTCGCCCTTCATGCTCTCGCGGCAGAACTCCGGGCGCTGCGGCACCGCGCCC TCGCCGCTCTCGGTGTCCTCCCCCTCCTCGTGGGCGCCTCCCCCGGTGTTTTCGAGGAAC AACAGCATCAGCAATGGCGCCGGGGAGGAGATGGTCGGCCTCGGCGACGAGCTCATCAGC CCGGCCAACGGCGGGGGCCCGCCATCGCCCTTCTTCGGCGGCGACCCGCTCATGGACGAG CTCCAGCTGCAGGACCAGCTCGCGTTCCTCAACGAGGGCGGCGTCCCCGCGGGGCACCAG ATGCCCATGTTCGACGGCGGCGAGTGCCGGAGCCCCGGCGGAGGCGACGGCGGCCTTTTC TCCTACAACCTAGGGTGGGCGAACGGTGGCCCCGGACACCGCCGGAGCGCGTCGGTCAGC GAGCTCTGCCTCGGCGGCGCCGACGGCCTCGGCTGGAAGCCGTGCCTCTACTACGCGCGC GGCTACTGCAAGAACGGCAGCGCTTGCCGGTTCGTCCACGGCGGCCTCCCCGACGACGCC GCCGGCAAGATGGACCCCTCCGCCGTGGAGCAGCAGTGTCAGGACTTCCTCATCCGCTCC AAGTCCCAGCGCCTCGCCGCCGCCGCCTTCCCCTACTCGCCCACCGGCTCACTCCCCGGC TCGCCATCCGCAGCCACCAAGTGTTTGAGCTTGCTCCTCCAGCAGCAGCAGCAGCAGAAC GAGAGCCAGAGGGCGGCGGCAGCGGCGGCGCTGATGCTAGGCGGCGACGAGGCGCACAAG TTCATGGGGCGGCCGCGGCTGGAGCGCGCCGACTTCGCGAGCATGATGAACCCCGGCTCG CGCCAGATTTACCTCACCTTCCCGGCGGATAGCACCTTCCGCGAGGAGGACGTCTCCAAC TACTTCAGCATCTACGGCCCCGTCCACGACGTTCGCATCCCGTACCAGCAGAAGCGCATG TTCGGCTTCGTCACCTTCGTCTACCCGGAGACGGTGAAGCTGATTCTCGCCAAGGGCAAC CCGCACTTCATCTGCGACGCCCGCGTGCTCGTCAAGCCATACAAGGAGAAGGGCAAGGTC CCCGACAAGTACAGGAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCTGCACT ACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCGGTGCGAGAATG CTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGAGGAAGCTGGAGGAGCAGCAG CAGGCCGCCGAGCTGCAGCAGGCGATCGAGCTCCACAGCCGCCGCCTCATGGGGCTGCAG CTGCTAGACTTCAAGTCGCGCGCCGCCGCGGCGCCGACCCCCATTGGCAATCCTTTCAGC GCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCGGGGAGCTCGGT AAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCAACGGAGCCGATAAGGAGGAA TCCACCGGAGAGTCCTCCAGCCCTAACACAGACAGTGACCAAAGTGTGGAGCATAATCTG CCGGACAGCCCGTTTGCGTCGCCGACCAAGTCCGCGGGATTTGCTCGCGATCCTTTCGCT CCCACTGAGGCGGAGATCTCCGCCACCGCGTCGACTGGTTGTAGCGCCACCTATGTTGGC ATCAACAATGGCGCCAGCAATGGCGGCACTAACCATCTCCTACCTTCTGCCTTGGACATG CCCTCACCAAAACCTTATTTCTTCCCCATGTCCAGGCTGGCCTCCGATCACGGCGCGATC GGAATGTAA

Peptide Sequence

PEP ID	Os07t0682400-03
PEP Infomation	pep chromosome:IRGSP-1.0:7:28928736:28932713:-1 gene:Os07g0682400 transcript:Os07t0682400-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 53 description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0682400-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0682400-02);Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0682400-03)
Sequence	MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE LGLLPASGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPSSWAPPPVFSRN NSISNGAGEEMVGLGDELISPANGGGPPSPFFGGDPLMDELQLQDQLAFLNEGGVPAGHQ MPMFDGGECRSPGGGDGGLFSYNLGWANGGPGHRRSASVSELCLGGADGLGWKPCLYYAR GYCKNGSACRFVHGGLPDDAAGKMDPSAVEQQCQDFLIRSKSQRLAAAAFPYSPTGSLPG SPSAATKCLSLLLQQQQQQNESQRAAAAAALMLGGDEAHKFMGRPRLERADFASMMNPGS RQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGN PHFICDARVLVKPYKEKGKVPDKYRKQHQPGERVDFSSCTTPTGLDARDPFDMHQLGARM LQHSNSANEMLLRRKLEEQQQAAELQQAIELHSRRLMGLQLLDFKSRAAAAPTPIGNPFS ASQTAANATGESPPDSGELGKGSGFLLAHKKAVNGADKEESTGESSSPNTDSDQSVEHNL PDSPFASPTKSAGFARDPFAPTEAEISATASTGCSATYVGINNGASNGGTNHLLPSALDM PSPKPYFFPMSRLASDHGAIGM

Transcript Sequence

Transcript ID	Os07t0682400-03
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:28928736:28932713:-1 gene:Os07g0682400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 53 description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0682400-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0682400-02);Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0682400-03)
Sequence	GGGGGAAAATGGAGCTCTTCCTCTGCTCTTCACTGCCTCAGTGGCGCCGCTCCCACTGAT CTCTCTCTCGTCTTCTTCTTCTTTGAGCTTGCTTTGCTGCACACTCTAGTGGTGGTAATA GAACACAGCTCAGCAGCAGCAGCGGAGCAAGAAGCCAAGAAGCCAAGAAGCAACGAGTGT TGTGGTAAAGAAAGCGGAGGAGGAGGACGAAGAAGCTCGATTGCTTGCTTGCTGTGGAGC TCGCCATGGACGCCTACGAGGCGACCAAGGTGGTGTTCTCGCGGATCCAGGCGCTCGACC CGGACCACGCAGCCAAGATCATGGGCTTCCTCCTCATCCAGGACCATGGCGAGAAGGAGA TGATACGCCTCGCTTTCGGCCCCGAGGCGCTGCTCCACACCGTCATGGCCAAGGCCAGGA AGGAGCTCGGCCTCCTCCCGGCGTCCGGGCCCGGGACGCCCACCTCCGTGGCGGCGGCCG CGGCCGCCGCCCACTCGCCCTTCATGCTCTCGCGGCAGAACTCCGGGCGCTGCGGCACCG CGCCCTCGCCGCTCTCGGTGTCCTCCCCCTCCTCGTGGGCGCCTCCCCCGGTGTTTTCGA GGAACAACAGCATCAGCAATGGCGCCGGGGAGGAGATGGTCGGCCTCGGCGACGAGCTCA TCAGCCCGGCCAACGGCGGGGGCCCGCCATCGCCCTTCTTCGGCGGCGACCCGCTCATGG ACGAGCTCCAGCTGCAGGACCAGCTCGCGTTCCTCAACGAGGGCGGCGTCCCCGCGGGGC ACCAGATGCCCATGTTCGACGGCGGCGAGTGCCGGAGCCCCGGCGGAGGCGACGGCGGCC TTTTCTCCTACAACCTAGGGTGGGCGAACGGTGGCCCCGGACACCGCCGGAGCGCGTCGG TCAGCGAGCTCTGCCTCGGCGGCGCCGACGGCCTCGGCTGGAAGCCGTGCCTCTACTACG CGCGCGGCTACTGCAAGAACGGCAGCGCTTGCCGGTTCGTCCACGGCGGCCTCCCCGACG ACGCCGCCGGCAAGATGGACCCCTCCGCCGTGGAGCAGCAGTGTCAGGACTTCCTCATCC GCTCCAAGTCCCAGCGCCTCGCCGCCGCCGCCTTCCCCTACTCGCCCACCGGCTCACTCC CCGGCTCGCCATCCGCAGCCACCAAGTGTTTGAGCTTGCTCCTCCAGCAGCAGCAGCAGC AGAACGAGAGCCAGAGGGCGGCGGCAGCGGCGGCGCTGATGCTAGGCGGCGACGAGGCGC ACAAGTTCATGGGGCGGCCGCGGCTGGAGCGCGCCGACTTCGCGAGCATGATGAACCCCG GCTCGCGCCAGATTTACCTCACCTTCCCGGCGGATAGCACCTTCCGCGAGGAGGACGTCT CCAACTACTTCAGCATCTACGGCCCCGTCCACGACGTTCGCATCCCGTACCAGCAGAAGC GCATGTTCGGCTTCGTCACCTTCGTCTACCCGGAGACGGTGAAGCTGATTCTCGCCAAGG GCAACCCGCACTTCATCTGCGACGCCCGCGTGCTCGTCAAGCCATACAAGGAGAAGGGCA AGGTCCCCGACAAGTACAGGAAGCAGCACCAGCCGGGCGAGAGGGTGGACTTCTCCAGCT GCACTACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCGGTGCGA GAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGAGGAAGCTGGAGGAGC AGCAGCAGGCCGCCGAGCTGCAGCAGGCGATCGAGCTCCACAGCCGCCGCCTCATGGGGC TGCAGCTGCTAGACTTCAAGTCGCGCGCCGCCGCGGCGCCGACCCCCATTGGCAATCCTT TCAGCGCTTCTCAGACCGCCGCCAACGCGACCGGCGAGTCGCCTCCCGATTCCGGGGAGC TCGGTAAGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCAACGGAGCCGATAAGG AGGAATCCACCGGAGAGTCCTCCAGCCCTAACACAGACAGTGACCAAAGTGTGGAGCATA ATCTGCCGGACAGCCCGTTTGCGTCGCCGACCAAGTCCGCGGGATTTGCTCGCGATCCTT TCGCTCCCACTGAGGCGGAGATCTCCGCCACCGCGTCGACTGGTTGTAGCGCCACCTATG TTGGCATCAACAATGGCGCCAGCAATGGCGGCACTAACCATCTCCTACCTTCTGCCTTGG ACATGCCCTCACCAAAACCTTATTTCTTCCCCATGTCCAGGCTGGCCTCCGATCACGGCG CGATCGGAATGTAAAGTTGTTCTGAATGGAAGTGAGTAATACTACTACTGCCTAATCCTA GAATACTAGCAGCAAAGAAAAAGAGAATAGTGGAATATAGGAAAAGAGTGGAGAAGTTGC AGCATAGTGTTAGTTTCAGTCACCCCCCTTTTTTTTTACTTTCCTTTTCTTTTTCATTTT TCAAGAAGATAGCTTTATTAAACCATAAAGAGAAGAAAGAGGATGCCCTGGCCTCCAGAA GAGAAGCAGCAGCAGCAGCATCAATCAAGCCACCACCAACCACACCACCAATGTTTTAAA ATGCAGTGCCATTCAGATAAAAATTTAGAGCCCCTCCTATTACTACCATATCATATCACC TTAGTTAATCTTAGTTACTATTACCACCCACCGACCCACCACCATTGATGAATTACCCCC CAAAGCTCTTGATAAGCTACCACCAAAATAGCCACTAGTTTTATAGCATTAGGGGTGATG TTTAGCCACAAGACTAGTACTAGTACCAACCACAAGATACATGTAACACTACTACTGCCT GATTGCAGCTGTGTGCAAGGCAGTGAGTACAGCAGATATGTAATGGACCCAAGAACAAGT GACAGGTTTGAGTGAGAGAGAGAGAGAGAGAGAGGAAGGCTTAATTAGCTAGTGTAGTGT ATGTAAAATCACAAGAAGATGAACAAGTCAGTCAGTGTAGGTGTGATGAAAGGGGAAGGA CCACTCACTGCTGATGCTGCACCATTCTGTTGTGCCAATGTGGAGATGTGTCAGCGTTGG TGTTCATGGTCCCCCTGATCAGCAAATGCAGTCCCAATACAAGAAAAAAAAAGGAAGTTT CTTTTTTTCTTTT