Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0680000-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:28809536:28819770:-1 gene:Os07g0680000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VSR3, OsVSR3 description:Similar to Vacuolar sorting receptor 1 precursor (AtVSR1) (Epidermal growth factor receptor-like protein 1) (AtELP1) (AtELP) (BP80-like protein b) (AtBP80b) (Spot 3 protein). (Os07t0680000-01)
Sequence	ATGACGATGATGGGGTGTGCCGTGCTGCTCGTGGTGGTGGCGTCCATGGCGGGGGAGGCG GCGGGGAGGTTCGTGGTGGAGAAGAACAGCCTGCGGGTGACGTCGCCGGCGGGGCTCCGG GGCGTCTACGAGTGCGCCATCGGCAACTTCGGGATGCCGCAGTACGGGGGCACCATGCAC GGGGTCGTCGTCTACCCCAAGGCCAACAAGAAGGCCTGCAGGTCCTTCGACGACTTCGAC CTCTCCTTCAAGCCCAAGCCCGGCGGCCTCCCCATCTTCCTCCTCGTCGATCGCGGAGAC TGCTACTTCACAACAAAGGGATGGAATGCTCAAACCGCTGGAGCTGCAGCTGTTCTTGTT GCCGATGATAGATTGGAGCCTTTGATAACAATGGACTCTCCAGAGTCTAGTGGCACAGAT TACATAGAGAAAATTACTGTTCCTTCAGCACTTGTAACGAAGAAGTTTGGGGACGACCTT AAGAAAGCACTGGAAAACGGTGATATGGTCAATGTCCTTCTGGATTGGAGGGAATCTCTC CCTCATCCTGATGAGCGTGTAGAGTATGAATTCTGGACAAACAGCAACGATGAATGTGGT GCCAAATGTGACATGCAAATGAATTTTGTGAGGAACTTCAGAGGAACAGCACAGGTTCTT GAGAAAAGGGGTTACACTCAGTTCACCCCTCACTACATTACATGGTATTGTCCGGAAGCT TTTGTCCTGAGCAAGCAGTGCAGATCTCAGTGTATCAATCATGGGAGATACTGCGCTCCA GATCCAGAGCAGGATTTCAACATTGGATATGATGGAAAAGATGTTGTGCTTCAGAACCTG ATTCAGATTTGCTTGTTCAAGGTTGGCAATGAAACTCACAAACCATGGGTGTGGTGGGAT TATGTACACGATTTTTCAATTAGGTGCCCAATGAAGGAGAAGAAATACACGCGTGAATGC GCTAATGGTGTTATCAAGTCACTTGGATTGGACCTTGAGAGGATCAACAAGTGTGTGGGA GACCCTGAAGCTGATGAAGAAAATCCCGTGCTTAAAGCGGAACAAGATGCTCAAATTGGT CAAGGCTCTCGAGGAGATGTCACTATATTGCCGACCCTTGTCGTTAACAACAAGCAGTAC AGAGGTAAGCTGGAGAAAAGTGCTGTGTTAAAAGCAGTATGCTCAGGATTTGAGGAGACA ACTGAACCTGATGTTTGTTTGAGTCAAGAGATCCAAACAAATGAATGTTTGGAGAGCAAT GGAGGGTGCTGGCAGGACAAGACTAATAATTTTACTGCGTGCAAGGACACCTTCCGTGGG CGAGTTTGTGAATGCCCTATTGCCCGTGGTGTGAAGTTCGTTGGTGACGGGTACACTCAC TGTGAAGCTTCTGGTGTCGGTAGGTGCCAAATCAACAACGGAGGCTGCTGGAAGGAAACT AAAAATGGGAAGACGGTTTCTGCCTGCTCAAATGAAGAATCTAAAGGCTGCAAATGCCCA CCAGGTTTCAAGGGTGATGGTATAAAAAGTTGTGAAGATATTGATGAATGCAAAGACAAG CTTTTCTGCCAGTGCAAGGACTGCTCTTGTGAGAATACATGGGGAAGCTATGAGTGCAGC TGTGGTGGAAGTAATATGTTATACATGAGAGAGCATGACACTTGCATCAGCAAAGTTGCT TCTTCGTCAGTGGGCTGGGGCTTCCTTTGGGTTATTTTCTTTGGCCTCGCTTTGGCTGGA ATTGGAGCATATGCCGTATACAAATATCGGCTACGGAGTTACATGGATTCAGAGATTCGT GCGATCATGGCTCAGTACATGCCCCTGGAGAATCAAGAAACACCGAATCAACATCGTCCT GTGGAGCATGCTGATATCTGA

Peptide Sequence

PEP ID	Os07t0680000-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:28809536:28819770:-1 gene:Os07g0680000 transcript:Os07t0680000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VSR3, OsVSR3 description:Similar to Vacuolar sorting receptor 1 precursor (AtVSR1) (Epidermal growth factor receptor-like protein 1) (AtELP1) (AtELP) (BP80-like protein b) (AtBP80b) (Spot 3 protein). (Os07t0680000-01)
Sequence	MTMMGCAVLLVVVASMAGEAAGRFVVEKNSLRVTSPAGLRGVYECAIGNFGMPQYGGTMH GVVVYPKANKKACRSFDDFDLSFKPKPGGLPIFLLVDRGDCYFTTKGWNAQTAGAAAVLV ADDRLEPLITMDSPESSGTDYIEKITVPSALVTKKFGDDLKKALENGDMVNVLLDWRESL PHPDERVEYEFWTNSNDECGAKCDMQMNFVRNFRGTAQVLEKRGYTQFTPHYITWYCPEA FVLSKQCRSQCINHGRYCAPDPEQDFNIGYDGKDVVLQNLIQICLFKVGNETHKPWVWWD YVHDFSIRCPMKEKKYTRECANGVIKSLGLDLERINKCVGDPEADEENPVLKAEQDAQIG QGSRGDVTILPTLVVNNKQYRGKLEKSAVLKAVCSGFEETTEPDVCLSQEIQTNECLESN GGCWQDKTNNFTACKDTFRGRVCECPIARGVKFVGDGYTHCEASGVGRCQINNGGCWKET KNGKTVSACSNEESKGCKCPPGFKGDGIKSCEDIDECKDKLFCQCKDCSCENTWGSYECS CGGSNMLYMREHDTCISKVASSSVGWGFLWVIFFGLALAGIGAYAVYKYRLRSYMDSEIR AIMAQYMPLENQETPNQHRPVEHADI

Transcript Sequence

Transcript ID	Os07t0680000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:28809536:28819770:-1 gene:Os07g0680000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VSR3, OsVSR3 description:Similar to Vacuolar sorting receptor 1 precursor (AtVSR1) (Epidermal growth factor receptor-like protein 1) (AtELP1) (AtELP) (BP80-like protein b) (AtBP80b) (Spot 3 protein). (Os07t0680000-01)
Sequence	GGTCAAATCCTTCGTAGGGCAGGCTTCCTTTATTGCACTCCTGCTCCCGCGAAAGCCTCG CCTCGCCTTTTCTCCCTACCAAGCCACCACGCCACCCAAACCGCGATTTCTGATCGATCG ATCGTTAGCTCGATCCAAGAACCCATCTTTTCTTTGATCCCCAATCCTCTTTTGCCGAGG ATTAATTGGGAGAAGATGACGATGATGGGGTGTGCCGTGCTGCTCGTGGTGGTGGCGTCC ATGGCGGGGGAGGCGGCGGGGAGGTTCGTGGTGGAGAAGAACAGCCTGCGGGTGACGTCG CCGGCGGGGCTCCGGGGCGTCTACGAGTGCGCCATCGGCAACTTCGGGATGCCGCAGTAC GGGGGCACCATGCACGGGGTCGTCGTCTACCCCAAGGCCAACAAGAAGGCCTGCAGGTCC TTCGACGACTTCGACCTCTCCTTCAAGCCCAAGCCCGGCGGCCTCCCCATCTTCCTCCTC GTCGATCGCGGAGACTGCTACTTCACAACAAAGGGATGGAATGCTCAAACCGCTGGAGCT GCAGCTGTTCTTGTTGCCGATGATAGATTGGAGCCTTTGATAACAATGGACTCTCCAGAG TCTAGTGGCACAGATTACATAGAGAAAATTACTGTTCCTTCAGCACTTGTAACGAAGAAG TTTGGGGACGACCTTAAGAAAGCACTGGAAAACGGTGATATGGTCAATGTCCTTCTGGAT TGGAGGGAATCTCTCCCTCATCCTGATGAGCGTGTAGAGTATGAATTCTGGACAAACAGC AACGATGAATGTGGTGCCAAATGTGACATGCAAATGAATTTTGTGAGGAACTTCAGAGGA ACAGCACAGGTTCTTGAGAAAAGGGGTTACACTCAGTTCACCCCTCACTACATTACATGG TATTGTCCGGAAGCTTTTGTCCTGAGCAAGCAGTGCAGATCTCAGTGTATCAATCATGGG AGATACTGCGCTCCAGATCCAGAGCAGGATTTCAACATTGGATATGATGGAAAAGATGTT GTGCTTCAGAACCTGATTCAGATTTGCTTGTTCAAGGTTGGCAATGAAACTCACAAACCA TGGGTGTGGTGGGATTATGTACACGATTTTTCAATTAGGTGCCCAATGAAGGAGAAGAAA TACACGCGTGAATGCGCTAATGGTGTTATCAAGTCACTTGGATTGGACCTTGAGAGGATC AACAAGTGTGTGGGAGACCCTGAAGCTGATGAAGAAAATCCCGTGCTTAAAGCGGAACAA GATGCTCAAATTGGTCAAGGCTCTCGAGGAGATGTCACTATATTGCCGACCCTTGTCGTT AACAACAAGCAGTACAGAGGTAAGCTGGAGAAAAGTGCTGTGTTAAAAGCAGTATGCTCA GGATTTGAGGAGACAACTGAACCTGATGTTTGTTTGAGTCAAGAGATCCAAACAAATGAA TGTTTGGAGAGCAATGGAGGGTGCTGGCAGGACAAGACTAATAATTTTACTGCGTGCAAG GACACCTTCCGTGGGCGAGTTTGTGAATGCCCTATTGCCCGTGGTGTGAAGTTCGTTGGT GACGGGTACACTCACTGTGAAGCTTCTGGTGTCGGTAGGTGCCAAATCAACAACGGAGGC TGCTGGAAGGAAACTAAAAATGGGAAGACGGTTTCTGCCTGCTCAAATGAAGAATCTAAA GGCTGCAAATGCCCACCAGGTTTCAAGGGTGATGGTATAAAAAGTTGTGAAGATATTGAT GAATGCAAAGACAAGCTTTTCTGCCAGTGCAAGGACTGCTCTTGTGAGAATACATGGGGA AGCTATGAGTGCAGCTGTGGTGGAAGTAATATGTTATACATGAGAGAGCATGACACTTGC ATCAGCAAAGTTGCTTCTTCGTCAGTGGGCTGGGGCTTCCTTTGGGTTATTTTCTTTGGC CTCGCTTTGGCTGGAATTGGAGCATATGCCGTATACAAATATCGGCTACGGAGTTACATG GATTCAGAGATTCGTGCGATCATGGCTCAGTACATGCCCCTGGAGAATCAAGAAACACCG AATCAACATCGTCCTGTGGAGCATGCTGATATCTGAAATTGCAGCAAGCTTAACTGGGAG CTGGCAGCAGTATCGGTGGTCGCCATCTTGACAGAGTGGTAGGCTTGGAGCTACCCTTTG TGCCCAGAAGATAAAAAAAAATTCAGTATAGCTTATGTTTCTGAAACGACAAGATTTTTG CATATCCTCTTTTTCTCTTTGCTGAAACTTGCAGGACAGATTAGGATCTCCCCAGAATTA ACACCTCATTGGCCTCTAGTCATAATTATGAGCTTCTGGTCTTGTTCTTACTCTACTCCT ACATGTTTTTTTGTTTTTCAGCGAGATACTCCTATATGTTAAAAGCTTGTAAATACTGTT GTTCAGACAATAGTCCTTAATAAAGAGACCGGAAGAGCATTCTACACCT