Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0662500-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:27941759:27944162:1 gene:Os07g0662500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EUKARYOTIC ELONGATION FACTOR 1-BETA' description:Similar to Elongation factor 1-beta' (EF-1-beta'). (Os07t0662500-01)
Sequence

ATGGCCGTGACCTTCACCGACCTCCACACCGCCGACGGGCTCAAAGCCCTCGAGCAGCAC
CTCTCCGGCAAGACCTACGTCTCCGGAAACGCGATCAGCAAGGACGACATCAAGGTGTTC
GCCGCCGTGCCATCAAAGCCTGGAGCTGAGTTCCCGAACGCTGCTCGCTGGTATGATACC
GTCGCTGCGGCCCTCGCTTCAAGGTTCCCTGGCAAGGCAGTTGGAGTGAATCTGCCTGGA
GGAGGTGCGGCATCGTCTGCTGCAGCGGCTGCGCCAGCTGCTAAGGATGCTGATGAAGAT
GATGATGACCTGGATCTTTTTGGTGATGAGACCGAGGAAGACAAGAAAGCAGCAGATGAG
CGTGCAGCTTCCAAGGCCTCTTCAAAGAAGAAAGAAAGCGGAAAATCATCTGTCCTGTTG
GATGTCAAACCATGGGACGACGAGACTGATATGAAGAAGTTGGAGGAGGCTGTCCGCAGT
GTGCAGATGGAGGGTCTCACCTGGGGAGCATCAAAGCTTGTGCCTGTGGGTTACGGGATC
AAGAAGTTGCAGATCATGTTGACCATTGTTGATGACTTGGTGTCTGTGGATAGCCTTATC
GAAGAACATCTGACTGAAGAGCCGATCAACGAATTTGTCCAGAGCTGCGACATCGTTGCG
TTCAACAAGATTTAA

Peptide Sequence

PEP ID

Os07t0662500-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:27941759:27944162:1 gene:Os07g0662500 transcript:Os07t0662500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EUKARYOTIC ELONGATION FACTOR 1-BETA' description:Similar to Elongation factor 1-beta' (EF-1-beta'). (Os07t0662500-01)
Sequence

MAVTFTDLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDT
VAAALASRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAADE
RAASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGI
KKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI

Transcript Sequence

Transcript ID

Os07t0662500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:27941759:27944162:1 gene:Os07g0662500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EUKARYOTIC ELONGATION FACTOR 1-BETA' description:Similar to Elongation factor 1-beta' (EF-1-beta'). (Os07t0662500-01)
Sequence

CTCTAGGGTTTGGGATTTTAGCCGCCGCCGCCGCCGCCGCCGCTCACCCGCGCCTTCGAC
GAGCTCCAGCCCGTAGACCTCGCCGGATCTCCCCGATGGCCGTGACCTTCACCGACCTCC
ACACCGCCGACGGGCTCAAAGCCCTCGAGCAGCACCTCTCCGGCAAGACCTACGTCTCCG
GAAACGCGATCAGCAAGGACGACATCAAGGTGTTCGCCGCCGTGCCATCAAAGCCTGGAG
CTGAGTTCCCGAACGCTGCTCGCTGGTATGATACCGTCGCTGCGGCCCTCGCTTCAAGGT
TCCCTGGCAAGGCAGTTGGAGTGAATCTGCCTGGAGGAGGTGCGGCATCGTCTGCTGCAG
CGGCTGCGCCAGCTGCTAAGGATGCTGATGAAGATGATGATGACCTGGATCTTTTTGGTG
ATGAGACCGAGGAAGACAAGAAAGCAGCAGATGAGCGTGCAGCTTCCAAGGCCTCTTCAA
AGAAGAAAGAAAGCGGAAAATCATCTGTCCTGTTGGATGTCAAACCATGGGACGACGAGA
CTGATATGAAGAAGTTGGAGGAGGCTGTCCGCAGTGTGCAGATGGAGGGTCTCACCTGGG
GAGCATCAAAGCTTGTGCCTGTGGGTTACGGGATCAAGAAGTTGCAGATCATGTTGACCA
TTGTTGATGACTTGGTGTCTGTGGATAGCCTTATCGAAGAACATCTGACTGAAGAGCCGA
TCAACGAATTTGTCCAGAGCTGCGACATCGTTGCGTTCAACAAGATTTAAAATATCAAAA
GGGGATGTTGCTACTTATCCAAAAACTGGGACTGGGACTGGTTGTTCTGGAAGCATTTTT
CATCCCATCTTATTATCCTTCACAGAAATGCTAGTTTGAGTTTATTTTTGAGTGATGCCT
GTCATTAGTGCCTCTTATCTTTAAGTAGTTGAACTGCAGAGCGGCTTGTAATGGCGAAAC
ATATGCTATGTCAAAGTACATCCGTCCATTTTTACTGTGCAAGTTTTGATGAGTATGCGT
TTCGTTG