Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0661900-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:27929713:27932769:-1 gene:Os07g0661900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0661900-01)
Sequence

ATGATCTCGCTGGCTGTTCCGGCGATATACTCGTTGACCTCCCAGTTTCCCAGTGCCACC
ACGCACGCCAGGGCGCCTTCCCGATGCGCGTGCGCGTGCGTGCCCGGTCGGCAAGTAGCG
GAGCAGCCACTAGCTTCCATGAAGGCCGAGCAGGCGGCGGCGGCGGCGGGAGAGACGCCG
AGGTTCAGGTGGGACACGTTCGGGTCAGCGCCGTCGGAGCCTCAGTGGGAGGCGATTCGG
GGGCTCTCCCCCAAGCTTCCCAATCGCTGTAGGGCCCTGATGGCGCGCCTCGTGTGCTTG
CCTCCTCCTGATCAGGATGGAGATGAGGATGAGGAGACTCTTGGTGCGCTGCTCGTGTTC
TGGGTGAAAGCCATGAAGCCCAAGAGGACGGATTGGTTGCTGGTGCTGAAGGAGCTCACG
GCTATGGAGAGCCCTCTCCTTGCTGAGGTGCTCGAGCATGCATTGCTGGAGGATTCTTTT
GAGGCAAATGTCCGTGACTACACCAAATTGATCCACATATATGGCAAACAAAAGCTATTG
CAGAAAGCTGAGGATGCATTCCATGCCATGAAAAGCAGAGGTTTGCCTTGCGATCAAGTT
ATGTTGACTGCACTGATGGACATGTACAGTAAAGCCGGAGATCTCACTCGTGCAAAAGAA
ATTTTCAACGAGATCGGATTGCTTGGCCTACCGATGGATAAGCGTGTATACGGTTCAATG
ATCATGGCTTACATCAGGGCTGACATGTTAGACAAAGCAGAAGACATGATCAGTGAAATG
GGGGATCAGCAGATTGTTGCAGGAAAGGAAGTTTACAAGGCATTGCTGAGAGCCTATTCA
TACAAAGGCGATTCAGAAGGGGCACAGCGAGTTTTCGATGCCATACAATTCGCAGGGATA
GTACCTGACACAAAGCTTTGCGCACTTCTGGTGAATGCTTACTGCCTCGCGGATCGAATC
AACGAAGCGATGATAGTAACACGGAATATGAGAAGCGCGAGAATCACACCGTGCAACAAA
TGCATTGCTTTGATATTGGGGGCTTATGAGAAGGTGAACAGGCTAGAAGGAGCACTGGCA
TTTTTGACAGAGCTCGAGGAGAACGGCGTTATTATTGGCCAAGAACCTTCTCAGCTGCTT
GCAGGATGGCTCAGAAGACTTGGTGTTGTTCAAGAAGTCGAACAGGTACTGAAGGACCTC
GCTGTAGACAGGAAGAACACCCTTGAAGTAGACAGGAAGAAGAACCTCGCATCAGACAGG
AAGATCAAGAGGAGGAGGAGCAAGAGCAAACGCAGTTTTGCATCATCTCTGCAACGCAAG
TGA

Peptide Sequence

PEP ID

Os07t0661900-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:27929713:27932769:-1 gene:Os07g0661900 transcript:Os07t0661900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0661900-01)
Sequence

MISLAVPAIYSLTSQFPSATTHARAPSRCACACVPGRQVAEQPLASMKAEQAAAAAGETP
RFRWDTFGSAPSEPQWEAIRGLSPKLPNRCRALMARLVCLPPPDQDGDEDEETLGALLVF
WVKAMKPKRTDWLLVLKELTAMESPLLAEVLEHALLEDSFEANVRDYTKLIHIYGKQKLL
QKAEDAFHAMKSRGLPCDQVMLTALMDMYSKAGDLTRAKEIFNEIGLLGLPMDKRVYGSM
IMAYIRADMLDKAEDMISEMGDQQIVAGKEVYKALLRAYSYKGDSEGAQRVFDAIQFAGI
VPDTKLCALLVNAYCLADRINEAMIVTRNMRSARITPCNKCIALILGAYEKVNRLEGALA
FLTELEENGVIIGQEPSQLLAGWLRRLGVVQEVEQVLKDLAVDRKNTLEVDRKKNLASDR
KIKRRRSKSKRSFASSLQRK

Transcript Sequence

Transcript ID

Os07t0661900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:27929713:27932769:-1 gene:Os07g0661900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0661900-01)
Sequence

GTATTATTTATTAAGTGTCAATGATTGAAATGGATGATTTACCATGTGACAGATTAATTA
TTAAAATTATATTGTTTTCATCCGTTGCAATGCACGGGCATTTTGCTAGTCTTTAAAAAA
AATAAGTTCAGTTGAGGCTAGGTGGTGTTTATTGACACTATCAAAATTAAGTACAGTTTT
TATAAGTAAATTTCAGTAGCATTTAGTTTTAGGATTATACTGGCAGTATGTTTGATTTGT
TTTCTTTCAATTTTGGCATTCAAATTTATGTTTTTATTTAGGACCGTTTTTGTTCTTGCC
ATTTTTTCAGTAGGAAAACCAGAAGTATTTTAATCAATACTATCATACTGTATTAAGATT
TGGTAATTTCAAGAGCTTTCATTCTTATGAACATCTCCAAAAATTGATGTATGGGTGTGT
TTAGTTCTTTGGGTGTAAAGTTTTTAAGTACACGGACACACATTTGAAGTATTAAACGTA
TACTAATAACAAAAACAAATTACAGATTTCATCTGTAAACTGCGATACGAATTTATTAAG
CCTAATTAATCTATCATTAGCAAATGTTTAATGCAGCATCACATTGTCAAATCATGACGT
AATTAGGCTCAAAGGATTTGTCTCACAATTTACATGCAAACTGTGCAATTGTTTTTTCCT
CACATTTATTGTTCCATGTGTCCGAACATTTGATGTGATGTTTTTGATCAAAAATTTTTA
AATCTAAATAAGGCCATAAGGCTTAAAACCAAATACTCCTGAAATTTAACATTGCTAAAT
TTCAGTGGGGGTTCAAAAGTGGCAGCAATCTCTAAACATTGGATAGAACTTTTCTCCTTC
GGCTATAGTGTCACTGTCCTCGCCTTCTCCGGCGAGCTCTCCTCCGCCGTCTCGTCCCTT
CTCCGATGATCTCGCTGGCTGTTCCGGCGATATACTCGTTGACCTCCCAGTTTCCCAGTG
CCACCACGCACGCCAGGGCGCCTTCCCGATGCGCGTGCGCGTGCGTGCCCGGTCGGCAAG
TAGCGGAGCAGCCACTAGCTTCCATGAAGGCCGAGCAGGCGGCGGCGGCGGCGGGAGAGA
CGCCGAGGTTCAGGTGGGACACGTTCGGGTCAGCGCCGTCGGAGCCTCAGTGGGAGGCGA
TTCGGGGGCTCTCCCCCAAGCTTCCCAATCGCTGTAGGGCCCTGATGGCGCGCCTCGTGT
GCTTGCCTCCTCCTGATCAGGATGGAGATGAGGATGAGGAGACTCTTGGTGCGCTGCTCG
TGTTCTGGGTGAAAGCCATGAAGCCCAAGAGGACGGATTGGTTGCTGGTGCTGAAGGAGC
TCACGGCTATGGAGAGCCCTCTCCTTGCTGAGGTGCTCGAGCATGCATTGCTGGAGGATT
CTTTTGAGGCAAATGTCCGTGACTACACCAAATTGATCCACATATATGGCAAACAAAAGC
TATTGCAGAAAGCTGAGGATGCATTCCATGCCATGAAAAGCAGAGGTTTGCCTTGCGATC
AAGTTATGTTGACTGCACTGATGGACATGTACAGTAAAGCCGGAGATCTCACTCGTGCAA
AAGAAATTTTCAACGAGATCGGATTGCTTGGCCTACCGATGGATAAGCGTGTATACGGTT
CAATGATCATGGCTTACATCAGGGCTGACATGTTAGACAAAGCAGAAGACATGATCAGTG
AAATGGGGGATCAGCAGATTGTTGCAGGAAAGGAAGTTTACAAGGCATTGCTGAGAGCCT
ATTCATACAAAGGCGATTCAGAAGGGGCACAGCGAGTTTTCGATGCCATACAATTCGCAG
GGATAGTACCTGACACAAAGCTTTGCGCACTTCTGGTGAATGCTTACTGCCTCGCGGATC
GAATCAACGAAGCGATGATAGTAACACGGAATATGAGAAGCGCGAGAATCACACCGTGCA
ACAAATGCATTGCTTTGATATTGGGGGCTTATGAGAAGGTGAACAGGCTAGAAGGAGCAC
TGGCATTTTTGACAGAGCTCGAGGAGAACGGCGTTATTATTGGCCAAGAACCTTCTCAGC
TGCTTGCAGGATGGCTCAGAAGACTTGGTGTTGTTCAAGAAGTCGAACAGGTACTGAAGG
ACCTCGCTGTAGACAGGAAGAACACCCTTGAAGTAGACAGGAAGAAGAACCTCGCATCAG
ACAGGAAGATCAAGAGGAGGAGGAGCAAGAGCAAACGCAGTTTTGCATCATCTCTGCAAC
GCAAGTGATTAGCTAGCTGCAACACAAACCTGCAACATTCTTGACTGGCAACAAGGACAT
GTGCTGCCCCATGAGTCAGATTACAATGCAAACTTGTATACATGTTTGGGATTTCACAGG
CGATACTACGATAAGATGGTAATTAAGCTATCTGAAAAGAAAAGGCTCCATCCAAGGTGA
TATGCATCACATGTAACTCTTAGAGGAACCCCTAGGCCCTAACTAGAATTTTGATACCCA
GAACAGCAGCAATGTTACAAGGAAGCTCTAACCAGAGCAGCAATGTTATCCTTGACACTT
AAGTTGATCATGACTCATTATCAACAATGTTTTGGACTTTTTCTTC