Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0655500-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:27555873:27566776:1 gene:Os07g0655500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulation of nuclear pre-mRNA protein domain containing protein. (Os07t0655500-01)
Sequence	ATGCCGCCGGCTCGGAAGAAGCGCGGGGCGGCCGCGGCAGCGGCCGCGGCGGCCGCTGCG GCGCAGTGGAAGGTGGGCGACCTCGTGCTCGCCAAGATGAAGGGCTTCCCGGCGTGGCCG GCCATGATAAGTGAGCCAGAGAAATGGGGCCTTTCTTCAGCTAAAAAGAAGCTGCTGGTC TACTTTTATGGAACTAAACAGATTGCTTTCTGCAACTATACTGACCTTGAGGCATTCACT GAAGAGAAAAGAAAATCTCTTCTTGCTAAGCGACATGGCAAAGGAGCAGATTTTGTTCGA GCAGTTAAGGAAATTGTGGAGATTTATGATTCTTTGAAGAATGAGAATAATAATAAGAGT GATACGTCTGGAACAGATGTGAAGCCAGATGTTGAAGATGCTGCCCACAATAGCAATTCT GACCGTGGAGGTCGTGGGGAAGGTTCTGATTTGGTCAATGATAACAAGCAAGACAGTCGA CCTACATCTTCCATGGATCACAATGTGACCAAAAGCCCTGGCTCAAATATTCCCGCAGTG GAGAGTGGCCGCTGTGTTGTGAATTCTGCACCTGACGAGCCTTCTAGTTCATTCTCAAAG AAGAGTCAAAATGATGTTCAGCAAAATATTTCTTGCGCCCTTGGTAATCTTACATCTCCA CGGAAGTTGAGAAGTTCATTAGGTGCTGATCTACGACCAACAGAGGATTCTTGTGGGCCA ATGAATAGTATTAATCAACCATGTGTTAATGTGATCTCTGATAACAAGCAGGTGCATTCT TTTCAGCATACATGCATCGGTGACAACAAATCAAACTCAGATTCTCTTCCAGCTAGAGAG GATTCCAGTCAAGGTACCTGCAGTAAACCTGAAGATTCTACAGTGGTTGTTGATGATGAA AGTTTGAATTCTATTGATGATGTACAAGATATTCATCATATTGAGGCATCTAAAACAGAA GTCAAACAGAATGGAACAATCGATTCCATGAGCACTACTGTCACTTTCAAGAGAAAAAGA AAGCCGCACACAAATCACATTAGTAATCCTATTATTAGTGTGGCACCAAAAACAGATGAA GAATTGCAGCCCAAGTCTAGTGGAAATCTCGCAGATTCCCCGAATTCAGGGAATGAAGTC AACAAGTCAGATGGAGACGAACACTTACCATTGGTCAAAAGGGCAAGGGTCCGTATGGGA AGAGCTCTTCTGGAGGACACAATAGTTGATGAGTGTGTTATTTCTGATAACAAAACAGAG CTGGCTACACATGAAAATAGATGTGATAAACATGACTTGTATGCAGGACTAGGGAAGGAT CATTCAGCTGACATGCCCCCTAGCATGGATCCTTCATCCAAAATAGACTTGATTATGCCA TCAGGAGATGCTCAGACTGCTTGCAAGAATAAAGAATACCATCCAAAGGTTTTGTCATTG GATGGCGAAGCTGCTTTGCCTCCGTCTAAACGCCTTCATCGTGCCTTAGAAGCTATGTCT GCTAATGCAACTGAAACTATCTGTAGCTCTCTCGAAGTGCAAAAATCGGAGTCAATCCTG AAAGTGAAAGGTTGTGCAGCTTCAGGAGCAAGTTCCCCTTCCAATAACTCTCTGGATGCA ATTGCCAAAGTTTCAAGATCTGTAATGACTAAAAGTCCTACTATTTCTTCAAGTGGACAT TCTTTAGATACCCCAGATGGCGAAAAGCATATCTTACTTAAGGATATCCCCTCTACTATT CCTTTGGATTTGAAAAATGCTTGCAGTCAAAATTCACTAAAAGAGAAAGTTGTTGAAGAA CTCCACATGGATGACAAAAACATCACGCTGACTGTTTGTAGTAGGGCTGATAACAATGTC TGTGGAAAAGCTCCAACCTATTCCATGGAGTCGAAAGCTAGTGGGAATGAATCCATGGAA CCAAATGGTGACCCTGCTCATGATTTTGTCAAAAACGTTAATGGGTCTGCTGAACCAGTT AGCCAAGCAAATGTTGTTCCAAGCTCCAATGGAAACTATAATTCTGTGCCACATGATGAT ATTCGTTTGGCTAAACCAACTGTTATTGTGTCTGACAGGACAAGTGCATCTTCTTTGGTC ACTAAAATTTCATGTATTCAATCGGATGCAAGTTCCCAGACATTTGAACCGCACGGTTCT TCAGCAATCGCACTGAAAGAACACAACCACAGAATGTACCCAAAGGGTAAGAGTCTATCT CCAGACATGATGCCTATGAAAGAACTAATTGCTGCTGCTCATACTCGAAGATTCTCGCAT TCAAGTTCTTTCATAGACAGTTTTCTCTGCTCCAATGGTGTTCCTGAACCTTCGGTGAAT GTACCTTCACTCAAGGAAGGGTCAAGTGGTCAATGTTCACCTTCCAATCATACAATAAGG TTCGCAGCAGATAGGATTCATACTCAACAAAATAGTGGTGCAATTCCTTTTGATAATATG CAACAGAAGGGCTTGAACAAATTATCAGGTCACGATGAAGCTAGTTCAGCACGGAGGGCC TTTGAAGCTTTCCTTGGTTCCTTAACAAGAACAAAAGAAAGTATAGGCCGTGCAACACGT CTTGCTCTGGAATGTGATAAGCAAGGCATTGCTGGTGAGGTAATGGATATCATCATCGAA CACCTGGAAAAAGAATCTAATTTGTATAAAAGGGTGGACCTGTTCTTCCTTGTCGATTCA ATAATACAATGCTGTCGCAACCAGAAAGGTGGAGTTGGCAATGCCTTTCCTTCACTTATC CAAGCAGTCCTACCCCGGATACTATATGCTTCTGCACCTCCTGGGAATTCTGCATGGGAG AATCGAAGGCAATGTCTTAAGGTTTTGAAGCTCTGGCTTGACAGGAAAACCCTTTCAGAA TACATCATTCGCCATCACATTAAAGAGCTTGAAGCTCTCAATGAGGCATCATTTGGAACC TCTCGTCGTCCATCAGGGACAGAAAGAGCTCTGAATGACCCTCTGCGGGATAACGAGGGA ATGCTTGTCGATGAGTATGGAAGCAACACTGGTTTTCATCTTCCAAATTTGATTGGCACA AAACTACTTGAAGATGAGGAAGGAAGCTCCTCTGAGGAGAGGAGCTTTGAAGCTGTTACC CCTGAACATGAAGCTACAGGTGCTAATGAGCAAGAAGCATCTCAAATGCATGTGGCGAAG CATCGACTTGTCCTGGAAGAAGTAGATGGTGACCATGAAATGGAGGATTTAGCCCCATCC TCAGAAGCAGAAGGGGAAGCTATCTCCTCATGCCAACCAGATTTAACTGTTGCTAGGTGT GCAACGACCAAGCAAAATGTTGATTCAGTTCCACCCTTACCTGATGACAAACCACCTTCT CCTCCTCCATTGCCATCATCTCCACCACCTTTGCCACGTCCACCCTGTCCTGTTTTTCAA GATTCGCAGGTGCAAGGAGCATTGGCAGCTGATCGAGTTCAACCAGATCCTCCAAGAACT ACCTATAATATTCAAGAGCAACACCCTCATTCTGTTGCAAACAATAGAAGCAACATGGAT CCTTGTGTAGTTTCATCACATCCTCCAGCGCCCTACAATTGTGGGTACGCTGGGCATGCA AATCAGATGCCTCTGCCACCTCCACCACCACCACCGCTGCCGCCGCCGCCTCCTGTTGCA CCATTTCATCCTCCTGGACCCCATTTTTCTGGGCCGTCAGTACCACCACATCATGGAAAT AATTATCACCAACCACCATCTGTGCCGCCACCTAATAATGCATATCACTTGCAGCCACCA CCACATCCACCATTTCCAAATCAGTACCCATACCCTCCCGAACCCCAACAAAACACACAA CCTTGGAATTGCAATCCGTCCTATCCTGAGAGGCATCAATACGGTGAGCATGACAGAGGA CCCCATGCATATGATAGCCGACATCACTTTCATCATAGAGGGCATCACTTTGATGACGGA GGGCATTATTTTGATGATGGAGCACATCATTTTGATGATAGAGGGCATCCCTTCGATGAT AGAGGGAATTACTTCGATGATAGAGGACATCACTTTGATGAAAGAGCAATTAGGGGACAA ATGCACCATGAAGTTGATAGAGGAAGATTTCCCCCACACTTCCCTCCAGGCCCCCCATTT CCAGACCATTTTGATGGTCCGTCCACCCCATTTCATTGTAGGCAACCATCGAATCCTCCA ACAGGGCCAGGCCCTGGGTGGTCAATGCCTCCTAGGAGATTTAAGTACCCTCCTGGCCCT AGACACTCGATGGACCATCCAGTTCCCCATGAAGGAGGTTGGAGGAGGAATGGAAGACAC AATCATGATAAACACCCTAGATGA

Peptide Sequence

PEP ID	Os07t0655500-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:27555873:27566776:1 gene:Os07g0655500 transcript:Os07t0655500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulation of nuclear pre-mRNA protein domain containing protein. (Os07t0655500-01)
Sequence	MPPARKKRGAAAAAAAAAAAAQWKVGDLVLAKMKGFPAWPAMISEPEKWGLSSAKKKLLV YFYGTKQIAFCNYTDLEAFTEEKRKSLLAKRHGKGADFVRAVKEIVEIYDSLKNENNNKS DTSGTDVKPDVEDAAHNSNSDRGGRGEGSDLVNDNKQDSRPTSSMDHNVTKSPGSNIPAV ESGRCVVNSAPDEPSSSFSKKSQNDVQQNISCALGNLTSPRKLRSSLGADLRPTEDSCGP MNSINQPCVNVISDNKQVHSFQHTCIGDNKSNSDSLPAREDSSQGTCSKPEDSTVVVDDE SLNSIDDVQDIHHIEASKTEVKQNGTIDSMSTTVTFKRKRKPHTNHISNPIISVAPKTDE ELQPKSSGNLADSPNSGNEVNKSDGDEHLPLVKRARVRMGRALLEDTIVDECVISDNKTE LATHENRCDKHDLYAGLGKDHSADMPPSMDPSSKIDLIMPSGDAQTACKNKEYHPKVLSL DGEAALPPSKRLHRALEAMSANATETICSSLEVQKSESILKVKGCAASGASSPSNNSLDA IAKVSRSVMTKSPTISSSGHSLDTPDGEKHILLKDIPSTIPLDLKNACSQNSLKEKVVEE LHMDDKNITLTVCSRADNNVCGKAPTYSMESKASGNESMEPNGDPAHDFVKNVNGSAEPV SQANVVPSSNGNYNSVPHDDIRLAKPTVIVSDRTSASSLVTKISCIQSDASSQTFEPHGS SAIALKEHNHRMYPKGKSLSPDMMPMKELIAAAHTRRFSHSSSFIDSFLCSNGVPEPSVN VPSLKEGSSGQCSPSNHTIRFAADRIHTQQNSGAIPFDNMQQKGLNKLSGHDEASSARRA FEAFLGSLTRTKESIGRATRLALECDKQGIAGEVMDIIIEHLEKESNLYKRVDLFFLVDS IIQCCRNQKGGVGNAFPSLIQAVLPRILYASAPPGNSAWENRRQCLKVLKLWLDRKTLSE YIIRHHIKELEALNEASFGTSRRPSGTERALNDPLRDNEGMLVDEYGSNTGFHLPNLIGT KLLEDEEGSSSEERSFEAVTPEHEATGANEQEASQMHVAKHRLVLEEVDGDHEMEDLAPS SEAEGEAISSCQPDLTVARCATTKQNVDSVPPLPDDKPPSPPPLPSSPPPLPRPPCPVFQ DSQVQGALAADRVQPDPPRTTYNIQEQHPHSVANNRSNMDPCVVSSHPPAPYNCGYAGHA NQMPLPPPPPPPLPPPPPVAPFHPPGPHFSGPSVPPHHGNNYHQPPSVPPPNNAYHLQPP PHPPFPNQYPYPPEPQQNTQPWNCNPSYPERHQYGEHDRGPHAYDSRHHFHHRGHHFDDG GHYFDDGAHHFDDRGHPFDDRGNYFDDRGHHFDERAIRGQMHHEVDRGRFPPHFPPGPPF PDHFDGPSTPFHCRQPSNPPTGPGPGWSMPPRRFKYPPGPRHSMDHPVPHEGGWRRNGRH NHDKHPR

Transcript Sequence

Transcript ID	Os07t0655500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:27555873:27566776:1 gene:Os07g0655500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulation of nuclear pre-mRNA protein domain containing protein. (Os07t0655500-01)
Sequence	AAGGACAAGAAAACCGAATTAAAAGAGAAAAATCTCGAAGCCTAAGCCGCCTCCCTCCTG TCCCCATCCGCCGCTCCGGCGCTCGATGCCTCCCTCCTCCGCCGCCCCCGCCACCGCCGC CGACGCAGCCACCTCGGAGCCCGTACGCGCCCCTACCCGCGCCGCAAACCCCGTCGTGCG GCGGCTCTGCCGCCTCGGGCGCTAGCCGCAGCAGGGGGGCGCCCTCCGACCGCCGGTGGT GGGGGCGTCGGCGATGCCGCCGGCTCGGAAGAAGCGCGGGGCGGCCGCGGCAGCGGCCGC GGCGGCCGCTGCGGCGCAGTGGAAGGTGGGCGACCTCGTGCTCGCCAAGATGAAGGGCTT CCCGGCGTGGCCGGCCATGATAAGTGAGCCAGAGAAATGGGGCCTTTCTTCAGCTAAAAA GAAGCTGCTGGTCTACTTTTATGGAACTAAACAGATTGCTTTCTGCAACTATACTGACCT TGAGGCATTCACTGAAGAGAAAAGAAAATCTCTTCTTGCTAAGCGACATGGCAAAGGAGC AGATTTTGTTCGAGCAGTTAAGGAAATTGTGGAGATTTATGATTCTTTGAAGAATGAGAA TAATAATAAGAGTGATACGTCTGGAACAGATGTGAAGCCAGATGTTGAAGATGCTGCCCA CAATAGCAATTCTGACCGTGGAGGTCGTGGGGAAGGTTCTGATTTGGTCAATGATAACAA GCAAGACAGTCGACCTACATCTTCCATGGATCACAATGTGACCAAAAGCCCTGGCTCAAA TATTCCCGCAGTGGAGAGTGGCCGCTGTGTTGTGAATTCTGCACCTGACGAGCCTTCTAG TTCATTCTCAAAGAAGAGTCAAAATGATGTTCAGCAAAATATTTCTTGCGCCCTTGGTAA TCTTACATCTCCACGGAAGTTGAGAAGTTCATTAGGTGCTGATCTACGACCAACAGAGGA TTCTTGTGGGCCAATGAATAGTATTAATCAACCATGTGTTAATGTGATCTCTGATAACAA GCAGGTGCATTCTTTTCAGCATACATGCATCGGTGACAACAAATCAAACTCAGATTCTCT TCCAGCTAGAGAGGATTCCAGTCAAGGTACCTGCAGTAAACCTGAAGATTCTACAGTGGT TGTTGATGATGAAAGTTTGAATTCTATTGATGATGTACAAGATATTCATCATATTGAGGC ATCTAAAACAGAAGTCAAACAGAATGGAACAATCGATTCCATGAGCACTACTGTCACTTT CAAGAGAAAAAGAAAGCCGCACACAAATCACATTAGTAATCCTATTATTAGTGTGGCACC AAAAACAGATGAAGAATTGCAGCCCAAGTCTAGTGGAAATCTCGCAGATTCCCCGAATTC AGGGAATGAAGTCAACAAGTCAGATGGAGACGAACACTTACCATTGGTCAAAAGGGCAAG GGTCCGTATGGGAAGAGCTCTTCTGGAGGACACAATAGTTGATGAGTGTGTTATTTCTGA TAACAAAACAGAGCTGGCTACACATGAAAATAGATGTGATAAACATGACTTGTATGCAGG ACTAGGGAAGGATCATTCAGCTGACATGCCCCCTAGCATGGATCCTTCATCCAAAATAGA CTTGATTATGCCATCAGGAGATGCTCAGACTGCTTGCAAGAATAAAGAATACCATCCAAA GGTTTTGTCATTGGATGGCGAAGCTGCTTTGCCTCCGTCTAAACGCCTTCATCGTGCCTT AGAAGCTATGTCTGCTAATGCAACTGAAACTATCTGTAGCTCTCTCGAAGTGCAAAAATC GGAGTCAATCCTGAAAGTGAAAGGTTGTGCAGCTTCAGGAGCAAGTTCCCCTTCCAATAA CTCTCTGGATGCAATTGCCAAAGTTTCAAGATCTGTAATGACTAAAAGTCCTACTATTTC TTCAAGTGGACATTCTTTAGATACCCCAGATGGCGAAAAGCATATCTTACTTAAGGATAT CCCCTCTACTATTCCTTTGGATTTGAAAAATGCTTGCAGTCAAAATTCACTAAAAGAGAA AGTTGTTGAAGAACTCCACATGGATGACAAAAACATCACGCTGACTGTTTGTAGTAGGGC TGATAACAATGTCTGTGGAAAAGCTCCAACCTATTCCATGGAGTCGAAAGCTAGTGGGAA TGAATCCATGGAACCAAATGGTGACCCTGCTCATGATTTTGTCAAAAACGTTAATGGGTC TGCTGAACCAGTTAGCCAAGCAAATGTTGTTCCAAGCTCCAATGGAAACTATAATTCTGT GCCACATGATGATATTCGTTTGGCTAAACCAACTGTTATTGTGTCTGACAGGACAAGTGC ATCTTCTTTGGTCACTAAAATTTCATGTATTCAATCGGATGCAAGTTCCCAGACATTTGA ACCGCACGGTTCTTCAGCAATCGCACTGAAAGAACACAACCACAGAATGTACCCAAAGGG TAAGAGTCTATCTCCAGACATGATGCCTATGAAAGAACTAATTGCTGCTGCTCATACTCG AAGATTCTCGCATTCAAGTTCTTTCATAGACAGTTTTCTCTGCTCCAATGGTGTTCCTGA ACCTTCGGTGAATGTACCTTCACTCAAGGAAGGGTCAAGTGGTCAATGTTCACCTTCCAA TCATACAATAAGGTTCGCAGCAGATAGGATTCATACTCAACAAAATAGTGGTGCAATTCC TTTTGATAATATGCAACAGAAGGGCTTGAACAAATTATCAGGTCACGATGAAGCTAGTTC AGCACGGAGGGCCTTTGAAGCTTTCCTTGGTTCCTTAACAAGAACAAAAGAAAGTATAGG CCGTGCAACACGTCTTGCTCTGGAATGTGATAAGCAAGGCATTGCTGGTGAGGTAATGGA TATCATCATCGAACACCTGGAAAAAGAATCTAATTTGTATAAAAGGGTGGACCTGTTCTT CCTTGTCGATTCAATAATACAATGCTGTCGCAACCAGAAAGGTGGAGTTGGCAATGCCTT TCCTTCACTTATCCAAGCAGTCCTACCCCGGATACTATATGCTTCTGCACCTCCTGGGAA TTCTGCATGGGAGAATCGAAGGCAATGTCTTAAGGTTTTGAAGCTCTGGCTTGACAGGAA AACCCTTTCAGAATACATCATTCGCCATCACATTAAAGAGCTTGAAGCTCTCAATGAGGC ATCATTTGGAACCTCTCGTCGTCCATCAGGGACAGAAAGAGCTCTGAATGACCCTCTGCG GGATAACGAGGGAATGCTTGTCGATGAGTATGGAAGCAACACTGGTTTTCATCTTCCAAA TTTGATTGGCACAAAACTACTTGAAGATGAGGAAGGAAGCTCCTCTGAGGAGAGGAGCTT TGAAGCTGTTACCCCTGAACATGAAGCTACAGGTGCTAATGAGCAAGAAGCATCTCAAAT GCATGTGGCGAAGCATCGACTTGTCCTGGAAGAAGTAGATGGTGACCATGAAATGGAGGA TTTAGCCCCATCCTCAGAAGCAGAAGGGGAAGCTATCTCCTCATGCCAACCAGATTTAAC TGTTGCTAGGTGTGCAACGACCAAGCAAAATGTTGATTCAGTTCCACCCTTACCTGATGA CAAACCACCTTCTCCTCCTCCATTGCCATCATCTCCACCACCTTTGCCACGTCCACCCTG TCCTGTTTTTCAAGATTCGCAGGTGCAAGGAGCATTGGCAGCTGATCGAGTTCAACCAGA TCCTCCAAGAACTACCTATAATATTCAAGAGCAACACCCTCATTCTGTTGCAAACAATAG AAGCAACATGGATCCTTGTGTAGTTTCATCACATCCTCCAGCGCCCTACAATTGTGGGTA CGCTGGGCATGCAAATCAGATGCCTCTGCCACCTCCACCACCACCACCGCTGCCGCCGCC GCCTCCTGTTGCACCATTTCATCCTCCTGGACCCCATTTTTCTGGGCCGTCAGTACCACC ACATCATGGAAATAATTATCACCAACCACCATCTGTGCCGCCACCTAATAATGCATATCA CTTGCAGCCACCACCACATCCACCATTTCCAAATCAGTACCCATACCCTCCCGAACCCCA ACAAAACACACAACCTTGGAATTGCAATCCGTCCTATCCTGAGAGGCATCAATACGGTGA GCATGACAGAGGACCCCATGCATATGATAGCCGACATCACTTTCATCATAGAGGGCATCA CTTTGATGACGGAGGGCATTATTTTGATGATGGAGCACATCATTTTGATGATAGAGGGCA TCCCTTCGATGATAGAGGGAATTACTTCGATGATAGAGGACATCACTTTGATGAAAGAGC AATTAGGGGACAAATGCACCATGAAGTTGATAGAGGAAGATTTCCCCCACACTTCCCTCC AGGCCCCCCATTTCCAGACCATTTTGATGGTCCGTCCACCCCATTTCATTGTAGGCAACC ATCGAATCCTCCAACAGGGCCAGGCCCTGGGTGGTCAATGCCTCCTAGGAGATTTAAGTA CCCTCCTGGCCCTAGACACTCGATGGACCATCCAGTTCCCCATGAAGGAGGTTGGAGGAG GAATGGAAGACACAATCATGATAAACACCCTAGATGACTGGGAGCAGAGGAGCTTTCCAC CTCATTTACCTCAGAACTGTTGCCGAGCCTCAGCTGCGAGTGGCAATATATTTCGTTACT GGAGCTCGGATAATCGCTGACAATATTTAATGGCTATATAATTTTGATCTGGTCTTTTCT CGTTTTTGAGCCGTGAAGAGTCCTTCAATGTCTCCGTTCATGTGCGGGCTTACCATGAAA TCTCCTTGACAAAAGAGATGGAACCGGCCCCACTGTACATATGTATCTTAGTTCTTAGCA CTGTTCTGCAAATGCAGAAACGGGAGGGAGTTCAATTGTGGGGAAGAGATGTCCTGTATC AGTTTAGTTACCCATAGATTATGTCGTTAGCCTAGCGGTTTACCGTCTCATTGGCAATGT CTTTGGTATTTAAATGTTCAATTTGTAATCCAAATGTTAATTTAAATACATTAAACTGAA CTGATTAGGGTTACACATGATCGAAGAACAGAGGTTTGG