Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0645000-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:26882080:26883927:-1 gene:Os07g0645000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Allergen V5/Tpx-1 related family protein. (Os07t0645000-01)
Sequence

ATGGATTCCAGGATCTCCCTCGTCTGCTTCCTCGTCCTCGCTTCCTCCTTGCTGCATTGC
GCCAGATCTGATGGAAGTGATTCACAGCTTCTCAAGGGCATCAACAGCTACAGAGCTTCC
CTCAAAGTCCCTGCGCTATCCGAGAACAAGAATGCTGCCTGCTTGGCTGAGCAGCTAGCA
CAGCAATTCAAAGACCAACCTTGCACCAACACCACCGGAGCAAACACTGTCCCTGGCACC
GAGCAGCAGTTCCCCGACTACCCAAAGTACCTCGACCATTGCCATCTCAACGCGTCGGTG
ACCGGAGACGGTCAGGTGATGCCGGCCTGCGTTCCCGGACTTGTACCTGATGTGGTTCTG
ACCAACTACACCAAGTCACAGTACAACCAGTATCTGAATGACACCAAGTTCTCTGGTGTT
GGGATCGCGAATGAGGGAGATTGGGTGGTCGTTGTCCTCAGCACGAGCTCGGGTTCAGGT
GATTACTCCCCTGCTCCCCCTGGCTCCAACTGGGCTCCTTCAGTTCATCCCTTCAATCAA
CTGATTCTTTTGTTGGTAGGCATTGTATGTTTGCTGATGATTTGA

Peptide Sequence

PEP ID

Os07t0645000-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:26882080:26883927:-1 gene:Os07g0645000 transcript:Os07t0645000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Allergen V5/Tpx-1 related family protein. (Os07t0645000-01)
Sequence

MDSRISLVCFLVLASSLLHCARSDGSDSQLLKGINSYRASLKVPALSENKNAACLAEQLA
QQFKDQPCTNTTGANTVPGTEQQFPDYPKYLDHCHLNASVTGDGQVMPACVPGLVPDVVL
TNYTKSQYNQYLNDTKFSGVGIANEGDWVVVVLSTSSGSGDYSPAPPGSNWAPSVHPFNQ
LILLLVGIVCLLMI

Transcript Sequence

Transcript ID

Os07t0645000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:26882080:26883927:-1 gene:Os07g0645000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Allergen V5/Tpx-1 related family protein. (Os07t0645000-01)
Sequence

GTCGGCGAGAATGGATTCCAGGATCTCCCTCGTCTGCTTCCTCGTCCTCGCTTCCTCCTT
GCTGCATTGCGCCAGATCTGATGGAAGTGATTCACAGCTTCTCAAGGGCATCAACAGCTA
CAGAGCTTCCCTCAAAGTCCCTGCGCTATCCGAGAACAAGAATGCTGCCTGCTTGGCTGA
GCAGCTAGCACAGCAATTCAAAGACCAACCTTGCACCAACACCACCGGAGCAAACACTGT
CCCTGGCACCGAGCAGCAGTTCCCCGACTACCCAAAGTACCTCGACCATTGCCATCTCAA
CGCGTCGGTGACCGGAGACGGTCAGGTGATGCCGGCCTGCGTTCCCGGACTTGTACCTGA
TGTGGTTCTGACCAACTACACCAAGTCACAGTACAACCAGTATCTGAATGACACCAAGTT
CTCTGGTGTTGGGATCGCGAATGAGGGAGATTGGGTGGTCGTTGTCCTCAGCACGAGCTC
GGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAACTGGGCTCCTTCAGTTCATCC
CTTCAATCAACTGATTCTTTTGTTGGTAGGCATTGTATGTTTGCTGATGATTTGAGAGAT
TTGATCATACTGCAGAGAGTGTACCTTACTTTTGATGTAATCCTTTTTTGGATCGTCCAT
ATTTGAATTGAACTTTGTCTCATTGACAACTTGCTAGTATTTGCTACGAGGATATGGATC
GGAACGTATTCTTTTGACTGTTTTTTCTTAAACCTTTGACTACAATATATAATGGTCCTT
ACGCAATGTGTTCAAAAGAAGTGTATGCATTTGAAGTATGTCTTTGGATATTTAGGTTGG
CAGTTGGCTGCCGGTGTGTATTCAGCTTGTGATCATTGGAGAACCAATGCAGTTGAACAA
TGACTTGCATGCTTTGTAG