Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0642800-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:26768377:26774119:1 gene:Os07g0642800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to plectin-related. (Os07t0642800-01)
Sequence

ATGACGCGGGCGTCCACAATTGATTTCGGGCGGAAGACACATAATGATGTCCTCTGGTCA
GGGCCATTGCGTCCTGCAAACTTCATCAGAAATAAATTCCCTACATACAAGAAGAGTTTG
AATGGGATAGTTATCAAATTGACAGATGATCAAGAAATGCCATCTCTGAAAGAGGCTGTT
GCCAAGGAAACAGCAGACCTACTTCATCGGAGTCAGCGCCTTTCAGTCCGTGAGCTTGCT
ATGAAATTTGAGAAGGGTCTTAACACTGCCACATTGTTGTCTAATGAGGTTAAATGGAGA
CAAGCTGCTTTATTGGAGCGAGACATCCTTCTGAAAAATCTAAAGAGTGTATTAGAATCG
CTGAGAAGTCGAGTTGCAGGGAAACATAAGGATGAAATTGAGGAGTCCCTTTCTATGGTG
GATGTTTTAACAGTTCAGCTGTCTAAAAGAGAAGACGAGTTGCTGCAGCAAAAGGCAGAG
GTTGCCAAAATTGCAACCTCATTGAAACTGGCTTCTGAAGATGCCAGGAGAATTGTTGAA
GAAGAAAGATCTAACGCTCGCATAGAGATAGATAATGCTAGAGCTGCTGTACAAAAAGTT
GAACAATTAGTTAAAGAGCAAGAAATTGATCCTCAAATAAATGGGAAACAGGATGAGGAT
GAACTTAAGGAAAAGGCTCAAGAAGCACGGAGAGTGAAAATGCTGCATTGTCCCAGCAAG
GCAATGGACATTGAAAATGAGATTGAAGTCCTACGTGAACAATTAGCTGAGAAGTCCTCA
AATTGTGTTCATCTTTTGAAAGAGTTACACCTGCATCAAAGCTATGAGGAAAACGATGTG
TCCTCGTATGAGCTGGAGGGCCTTGAAAGCTTAGGCTCAATGTTGCGCATAGTTTCCCAG
AGTGATGGATATGTTGATTTATCAAGAAGTACAATACAGTGGTTCCGTGTGCAGCCTGAA
GGAAACAAGAAAGAGATAATTTCAGGTGCCATAAAGCAAGCATATGCTCCAGAACCACAT
GATGTTGGGCGGTATTTGCAAGCTGAGATCAACCATTGCGGTGAAATCTCTGTCGTGAAG
ACTGCTGGCCCTGTGGATCCTGCTGCAGGATTGGTCGATTACGTAGAGACTCTTCTAAGG
AATCCTGAAACTGAATATAATGTTGTTGTTCTTCAAGTGAATGGAATCAAACAGCCTACC
GATTCAATTCATGTTCTTTCCATCGGGAAACTGCGGATGAGACTCGCAAAAGGGAAGACA
GTAATTGCAAAAGAATTCTACTCCTCAACGATGCAGCTATGTGGTATGAGAGGCGGTGGA
GATGCTGCACCCCAAGCGATGTACTGGCAACCGAGGAGAGACCTGAGCCTGGTGCTGGGC
TTCGAGACGGCCAGAGAACGCAACTCTGCAATCATGCTCGCTCGCAGATTTGCCATCGAT
TGCAATATCATACTTGCTGGTCCTGGGGATAAAACTCACTGGTGA

Peptide Sequence

PEP ID

Os07t0642800-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:26768377:26774119:1 gene:Os07g0642800 transcript:Os07t0642800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to plectin-related. (Os07t0642800-01)
Sequence

MTRASTIDFGRKTHNDVLWSGPLRPANFIRNKFPTYKKSLNGIVIKLTDDQEMPSLKEAV
AKETADLLHRSQRLSVRELAMKFEKGLNTATLLSNEVKWRQAALLERDILLKNLKSVLES
LRSRVAGKHKDEIEESLSMVDVLTVQLSKREDELLQQKAEVAKIATSLKLASEDARRIVE
EERSNARIEIDNARAAVQKVEQLVKEQEIDPQINGKQDEDELKEKAQEARRVKMLHCPSK
AMDIENEIEVLREQLAEKSSNCVHLLKELHLHQSYEENDVSSYELEGLESLGSMLRIVSQ
SDGYVDLSRSTIQWFRVQPEGNKKEIISGAIKQAYAPEPHDVGRYLQAEINHCGEISVVK
TAGPVDPAAGLVDYVETLLRNPETEYNVVVLQVNGIKQPTDSIHVLSIGKLRMRLAKGKT
VIAKEFYSSTMQLCGMRGGGDAAPQAMYWQPRRDLSLVLGFETARERNSAIMLARRFAID
CNIILAGPGDKTHW

Transcript Sequence

Transcript ID

Os07t0642800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:26768377:26774119:1 gene:Os07g0642800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to plectin-related. (Os07t0642800-01)
Sequence

GAGAAAAGAGAGGAGAGAGAGAGGCAAACCCGCACCAAAATCTCTCTCTCTCCCCCAGAT
TTGCGCCACATTTTCCTCGCCGAATCAGCCTCGCCGCCGTGGGTGCAGCTGCCGCGGGAT
CCCGGCGAGCGAGCGCCATTTGAGCCGGCTGCCGGCGGGTTTGCGTTCTGGAAGCTCCTT
GCTGTAAACTATTGAGGGGTAAAGCCTGCTATTTAGTCAAGGTTGAGGGTGCTGTATAAA
TGACGCGGGCGTCCACAATTGATTTCGGGCGGAAGACACATAATGATGTCCTCTGGTCAG
GGCCATTGCGTCCTGCAAACTTCATCAGAAATAAATTCCCTACATACAAGAAGAGTTTGA
ATGGGATAGTTATCAAATTGACAGATGATCAAGAAATGCCATCTCTGAAAGAGGCTGTTG
CCAAGGAAACAGCAGACCTACTTCATCGGAGTCAGCGCCTTTCAGTCCGTGAGCTTGCTA
TGAAATTTGAGAAGGGTCTTAACACTGCCACATTGTTGTCTAATGAGGTTAAATGGAGAC
AAGCTGCTTTATTGGAGCGAGACATCCTTCTGAAAAATCTAAAGAGTGTATTAGAATCGC
TGAGAAGTCGAGTTGCAGGGAAACATAAGGATGAAATTGAGGAGTCCCTTTCTATGGTGG
ATGTTTTAACAGTTCAGCTGTCTAAAAGAGAAGACGAGTTGCTGCAGCAAAAGGCAGAGG
TTGCCAAAATTGCAACCTCATTGAAACTGGCTTCTGAAGATGCCAGGAGAATTGTTGAAG
AAGAAAGATCTAACGCTCGCATAGAGATAGATAATGCTAGAGCTGCTGTACAAAAAGTTG
AACAATTAGTTAAAGAGCAAGAAATTGATCCTCAAATAAATGGGAAACAGGATGAGGATG
AACTTAAGGAAAAGGCTCAAGAAGCACGGAGAGTGAAAATGCTGCATTGTCCCAGCAAGG
CAATGGACATTGAAAATGAGATTGAAGTCCTACGTGAACAATTAGCTGAGAAGTCCTCAA
ATTGTGTTCATCTTTTGAAAGAGTTACACCTGCATCAAAGCTATGAGGAAAACGATGTGT
CCTCGTATGAGCTGGAGGGCCTTGAAAGCTTAGGCTCAATGTTGCGCATAGTTTCCCAGA
GTGATGGATATGTTGATTTATCAAGAAGTACAATACAGTGGTTCCGTGTGCAGCCTGAAG
GAAACAAGAAAGAGATAATTTCAGGTGCCATAAAGCAAGCATATGCTCCAGAACCACATG
ATGTTGGGCGGTATTTGCAAGCTGAGATCAACCATTGCGGTGAAATCTCTGTCGTGAAGA
CTGCTGGCCCTGTGGATCCTGCTGCAGGATTGGTCGATTACGTAGAGACTCTTCTAAGGA
ATCCTGAAACTGAATATAATGTTGTTGTTCTTCAAGTGAATGGAATCAAACAGCCTACCG
ATTCAATTCATGTTCTTTCCATCGGGAAACTGCGGATGAGACTCGCAAAAGGGAAGACAG
TAATTGCAAAAGAATTCTACTCCTCAACGATGCAGCTATGTGGTATGAGAGGCGGTGGAG
ATGCTGCACCCCAAGCGATGTACTGGCAACCGAGGAGAGACCTGAGCCTGGTGCTGGGCT
TCGAGACGGCCAGAGAACGCAACTCTGCAATCATGCTCGCTCGCAGATTTGCCATCGATT
GCAATATCATACTTGCTGGTCCTGGGGATAAAACTCACTGGTGATTGATGAAGACGAACT
GTACCAGCTAACCTCTTGTACGAGCTCAGACCCTGTGTTTGGAATCATTGTACATCTGTG
TCGTTGTAGTTAGATACTCTAATACATATCTGATCTGTGAGGTGTATTGTAGTGAGGGGT
AGTTTAGTAGTAGTAGGTTCGCCAAGGCATCGTTTTTACTGCCTTGCGGGTCAGTCTAGT
TTAGTTGGTACATTATATTTCTCATTTCTGAGAGAGAGACACCCACGCATGTTGTAGCTG
TGTCAGTACTCTAGTGTATGTAACTTTGTTCATGAAACTGTTTACCAAACATAATGGACT
ATCCCCCTTTCTGCT