Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0642300-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:26731041:26733282:1 gene:Os07g0642300 gene_biotype:protein_coding transcript_biotype:protein_coding description:TRAPP I complex, Bet3 domain containing protein. (Os07t0642300-01)
Sequence

ATGCCGCCGCTCACGGGGCCCAAGTCCGGGGACGCTCTCTTCGGCAGCGTCGAGCGCGTC
AACGCGGAGCTGTTCACGCTCACGTATGGGGCCATCGTGAGGCAGCTGCTCACGGATCTG
GAGGAGGTCGAGGAGGTCAACAAGCAGCTTGATCAGATGGGCTACAACATTGGAACTCGG
TTGGTTGATGAGTTCCTGGCCAAATCAAATGTATCAAGGTGTGTTGACTTCAAGGAGACT
GCCGATGTCATTGCAAAGCTTGGATTCAAAATGTTCTTGGGTGTGACTGCAACTGTCACC
AATTGGGATGCTGAGGGTACAAGCTGCAGCTTTGTATTGGAGGACAATCCTCTTGTAGAT
TTTGTTGAACTTCCTGATACTTGCCAAGGTCTTCAGTACTGCAATGTGCTAAGTGGAGTT
ATTAGGGGTGCACTGGAAATGGTTTCTATGAAGACAGAGGTTACATGGGTCCGTGATATG
CTTCGTGGGGATGATGCCTACGAGATGCGAGTGAAGCTTACCAAGCAAGTCCCAGAGGAA
TACCCCTACAAGGATGATGACTGA

Peptide Sequence

PEP ID

Os07t0642300-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:26731041:26733282:1 gene:Os07g0642300 transcript:Os07t0642300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:TRAPP I complex, Bet3 domain containing protein. (Os07t0642300-01)
Sequence

MPPLTGPKSGDALFGSVERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGTR
LVDEFLAKSNVSRCVDFKETADVIAKLGFKMFLGVTATVTNWDAEGTSCSFVLEDNPLVD
FVELPDTCQGLQYCNVLSGVIRGALEMVSMKTEVTWVRDMLRGDDAYEMRVKLTKQVPEE
YPYKDDD

Transcript Sequence

Transcript ID

Os07t0642300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:26731041:26733282:1 gene:Os07g0642300 gene_biotype:protein_coding transcript_biotype:protein_coding description:TRAPP I complex, Bet3 domain containing protein. (Os07t0642300-01)
Sequence

CCCCCGATCTCTCTCTCTCTCTCTCCTCCGCATCACCACCACCGCCGCCGACGAGCTCCG
GTCGCCGCCGGCGAGAGGCGCCGCGCGATCCGGGAGATGCCGCCGCTCACGGGGCCCAAG
TCCGGGGACGCTCTCTTCGGCAGCGTCGAGCGCGTCAACGCGGAGCTGTTCACGCTCACG
TATGGGGCCATCGTGAGGCAGCTGCTCACGGATCTGGAGGAGGTCGAGGAGGTCAACAAG
CAGCTTGATCAGATGGGCTACAACATTGGAACTCGGTTGGTTGATGAGTTCCTGGCCAAA
TCAAATGTATCAAGGTGTGTTGACTTCAAGGAGACTGCCGATGTCATTGCAAAGCTTGGA
TTCAAAATGTTCTTGGGTGTGACTGCAACTGTCACCAATTGGGATGCTGAGGGTACAAGC
TGCAGCTTTGTATTGGAGGACAATCCTCTTGTAGATTTTGTTGAACTTCCTGATACTTGC
CAAGGTCTTCAGTACTGCAATGTGCTAAGTGGAGTTATTAGGGGTGCACTGGAAATGGTT
TCTATGAAGACAGAGGTTACATGGGTCCGTGATATGCTTCGTGGGGATGATGCCTACGAG
ATGCGAGTGAAGCTTACCAAGCAAGTCCCAGAGGAATACCCCTACAAGGATGATGACTGA
CTTGACGATTTCGTGGATAGTTTCTCAGTTCTCACATGATGCTTGTTTGCTCGTCTGGAT
TTCCCTTCTTTTCTTTCCTCTGTGACTGTGATTCTGGTTCGACTTGGCTGGATGCTACAT
GAGATAGCTGTGCATTATATTTTACACTTGCACTTTGCACGGCAGCATGTATTGTAGAAA
TCTATCATAACTTCTGAATTTGTTTGCTAAGTTTGACAAAGCGTTTACGATCC