Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0624600-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:25867212:25871232:1 gene:Os07g0624600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TREHALOSE-6-PHOSPHATE PHOSHPHATASE 3 description:Similar to Trehalose-6-phosphate phosphatase. (Os07t0624600-01)
Sequence

ATGACGAACCACGCCGGCTTCGCCGCGGACGACGCGGTCACCGCGGCCGTGCCGGTGCAG
GCGGCGCAGGGCGGGCGGCATTTCCCGCCGTTCCTGGCGCCGTCGTCCAGGCTCACCGAC
TGCAAGAAGGCGGCGGCGCACGTGGACCTCGCCGGCGCGGGCGGGGTGGCGACGGTGCCC
GGATCTTGGCCGCGCCACGCCAAGCCCGTCTCCGGCGCCGAGCTCGACGACTGGATGGAG
AAGCACCCGTCGGCATTGGCATGGTTCGAGTCCGTCGCCGCCGCGGCGAAGGGCAAGGAG
ATCGTCGTGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGCCGACCCCGACCGC
GCCTTCATGTCCGACGAAATGAGAGAGGCGGTGAGAGGCGTGGCGAAGCACTTCCCGACG
GCGATCGTGAGCGGGAGGTGCATCGACAAGGTGTTCGACTTTGTGAAGCTGGAGGAGCTG
TACTACGCCGGGAGCCATGGAATGGACATCAGGGGCCCCACCGCGGCAGCGTCGGAGTAC
AACCACAACATGAAGGCAAAGCAGGGTGATGCTGTTACTTTCCAGCCGGCCGCCGATTTC
CTGCCCGTCATCGAGGAGGTGTATCATGTGCTGAAGGAGAGGATGGCGAGTATAAGGGGT
TCGCTGGTGGAGAACAACAAGTTTTGCCTTTCCGTGCACTACCGCTGCGTCGACGAGGCG
GAATGGGGCGTGCTGGACGGCAAGGTGAGGGCGGTGATAGAGGGCTACCCGGATCTCCGT
CTCAGCAAGGGGAGAAAGGTGCTGGAGATCCGCCCTGTCATCGACTGGGACAAAGGCTCC
GCACTCCAGTTCCTGCTCAAATCTCTCGGTTATGAGGGGCGCAACAATGTTTTCCCGATA
TACATTGGAGATGACCGCACCGACGAGGATGCTTTCAAGGTGTTGCGCAACATGGGACAG
GGCATAGGAATCCTTGTGACCAAGGTCCCAAAGGAGACAGCTGCATCCTACACTCTGCGA
GAGCCATCCGAGGTGAAGGAGTTCCTGCGCAAGTTGGTGAAGATTAAGATCAACGGGGAC
AAAGGGCTGATTGGCAAGTAG

Peptide Sequence

PEP ID

Os07t0624600-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:25867212:25871232:1 gene:Os07g0624600 transcript:Os07t0624600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TREHALOSE-6-PHOSPHATE PHOSHPHATASE 3 description:Similar to Trehalose-6-phosphate phosphatase. (Os07t0624600-01)
Sequence

MTNHAGFAADDAVTAAVPVQAAQGGRHFPPFLAPSSRLTDCKKAAAHVDLAGAGGVATVP
GSWPRHAKPVSGAELDDWMEKHPSALAWFESVAAAAKGKEIVVFLDYDGTLSPIVADPDR
AFMSDEMREAVRGVAKHFPTAIVSGRCIDKVFDFVKLEELYYAGSHGMDIRGPTAAASEY
NHNMKAKQGDAVTFQPAADFLPVIEEVYHVLKERMASIRGSLVENNKFCLSVHYRCVDEA
EWGVLDGKVRAVIEGYPDLRLSKGRKVLEIRPVIDWDKGSALQFLLKSLGYEGRNNVFPI
YIGDDRTDEDAFKVLRNMGQGIGILVTKVPKETAASYTLREPSEVKEFLRKLVKIKINGD
KGLIGK

Transcript Sequence

Transcript ID

Os07t0624600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:25867212:25871232:1 gene:Os07g0624600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TREHALOSE-6-PHOSPHATE PHOSHPHATASE 3 description:Similar to Trehalose-6-phosphate phosphatase. (Os07t0624600-01)
Sequence

ACCTTCCCCTGTCATCTCCTCCTCCTCCACCACCACCTCGCCGTCGCCGTCACCGCGCCA
CCGTCTCCTCGATCTCTCACTCCCACAGCTCGCTGGTTGCTTCGGCTTCCGCTGCTCGGT
CGCGGTTGATTTTGGGGGATGACGAACCACGCCGGCTTCGCCGCGGACGACGCGGTCACC
GCGGCCGTGCCGGTGCAGGCGGCGCAGGGCGGGCGGCATTTCCCGCCGTTCCTGGCGCCG
TCGTCCAGGCTCACCGACTGCAAGAAGGCGGCGGCGCACGTGGACCTCGCCGGCGCGGGC
GGGGTGGCGACGGTGCCCGGATCTTGGCCGCGCCACGCCAAGCCCGTCTCCGGCGCCGAG
CTCGACGACTGGATGGAGAAGCACCCGTCGGCATTGGCATGGTTCGAGTCCGTCGCCGCC
GCGGCGAAGGGCAAGGAGATCGTCGTGTTCCTCGACTACGACGGCACCCTCTCCCCCATC
GTCGCCGACCCCGACCGCGCCTTCATGTCCGACGAAATGAGAGAGGCGGTGAGAGGCGTG
GCGAAGCACTTCCCGACGGCGATCGTGAGCGGGAGGTGCATCGACAAGGTGTTCGACTTT
GTGAAGCTGGAGGAGCTGTACTACGCCGGGAGCCATGGAATGGACATCAGGGGCCCCACC
GCGGCAGCGTCGGAGTACAACCACAACATGAAGGCAAAGCAGGGTGATGCTGTTACTTTC
CAGCCGGCCGCCGATTTCCTGCCCGTCATCGAGGAGGTGTATCATGTGCTGAAGGAGAGG
ATGGCGAGTATAAGGGGTTCGCTGGTGGAGAACAACAAGTTTTGCCTTTCCGTGCACTAC
CGCTGCGTCGACGAGGCGGAATGGGGCGTGCTGGACGGCAAGGTGAGGGCGGTGATAGAG
GGCTACCCGGATCTCCGTCTCAGCAAGGGGAGAAAGGTGCTGGAGATCCGCCCTGTCATC
GACTGGGACAAAGGCTCCGCACTCCAGTTCCTGCTCAAATCTCTCGGTTATGAGGGGCGC
AACAATGTTTTCCCGATATACATTGGAGATGACCGCACCGACGAGGATGCTTTCAAGGTG
TTGCGCAACATGGGACAGGGCATAGGAATCCTTGTGACCAAGGTCCCAAAGGAGACAGCT
GCATCCTACACTCTGCGAGAGCCATCCGAGGTGAAGGAGTTCCTGCGCAAGTTGGTGAAG
ATTAAGATCAACGGGGACAAAGGGCTGATTGGCAAGTAGCTGATCCAAGGCATATAGCTA
GCTAGCTAGCTTTTTGTTCCTTAATTTGTCTCTTTCCTTTTGGTCCATTAGAAGAAGAAG
AAGAACAACAACAAGAGTTATATGCATGGATGGTAACTGATCATGCATGATCGATGCATG
CGGTGGTGAAAACCCGGGCTTTTGGCTTTGAAGGTGTCTATTACCGTATCCTTCTGGCCA
AGGTCCTGTAATTAAATTTTGCTGCCGTGACAACAGAAATCTCAGCAAGAGGGACACAAG
TGTGGCCCCTTTTCTTT