Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0623600-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:25804444:25807753:-1 gene:Os07g0623600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to mRNA, clone: RTFL01-43-H20. (Os07t0623600-01)
Sequence

ATGGAGAGGCCGGCGCCGGTGAGGAAGTCCCACACGTCGACGGCCGACCTGCTGACGTGG
CCGGAGGGCGCGGCCCAGGAGCTCGCCGCCGGGGCCACGCCGCCGCCCAACCGCCGGCCG
CACCAGCCGTCGGAGGCGATCAGTAAGGTGGTGTTCGGCGGGCAGGTGACCGAGGAGGAG
TTCGAGAGCCTCAACAAGAGGAAACCATGCTCAGCTCCCAAATGGAAGGAGATGACAGGA
AGCGGCATATTTGCAGCGGAAGGCGAGGTTGAGGAAGACGAGTCAGCCAATGCTTCTGCA
ACGCCCGTCCGAACGGTTTCTAAGAATTATCAGGCCATTAGCACTATAAGTCATATCTCA
TTCGCGGAGGAAGAAAGTGTTTCTCCAAAAAAGCCGACTTCGATAGCTGAGGTGGCGAAG
CAGCGCGAGCTAAGTGGCACGCTTCAGAGCGAGGATGAGAGTAAGATGAAGAGGCAGATA
TCCAATGCGAAATCGAAGGAGCTCAGCGGCCATGACATCTTTGCTCCTCCAGAAGATCCC
AGGCCACGCAACTCCGCGAACGGCTCGACCTCACAAACCCCGGGCAAAAATGCACAAGTG
AGCACCATCACGTTCGGAGAGGCTGACACCGACAGCGTGGTGAAAACGGCGAAGAAGATC
CCGGAGAAGAAGCTGACGGACCTGACGGGCAACGATATCTTCAAAGGCGATGCTGCCCCG
GGGACGGCGGAGAAGCACCTGAGCACGGCGAAGCTGAAGGAGATGACCGGCAGCGACATC
TTCGCGGACGGCAAAGCGCCGTCGCGGGACTACCTTGGTGGGATCCGCAAGCCCCCCGGC
GGCGAGAGCAGCATCGCGCTGGTCTAA

Peptide Sequence

PEP ID

Os07t0623600-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:25804444:25807753:-1 gene:Os07g0623600 transcript:Os07t0623600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to mRNA, clone: RTFL01-43-H20. (Os07t0623600-01)
Sequence

MERPAPVRKSHTSTADLLTWPEGAAQELAAGATPPPNRRPHQPSEAISKVVFGGQVTEEE
FESLNKRKPCSAPKWKEMTGSGIFAAEGEVEEDESANASATPVRTVSKNYQAISTISHIS
FAEEESVSPKKPTSIAEVAKQRELSGTLQSEDESKMKRQISNAKSKELSGHDIFAPPEDP
RPRNSANGSTSQTPGKNAQVSTITFGEADTDSVVKTAKKIPEKKLTDLTGNDIFKGDAAP
GTAEKHLSTAKLKEMTGSDIFADGKAPSRDYLGGIRKPPGGESSIALV

Transcript Sequence

Transcript ID

Os07t0623600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:25804444:25807753:-1 gene:Os07g0623600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to mRNA, clone: RTFL01-43-H20. (Os07t0623600-01)
Sequence

ATTCGACTCCACTCCACTCCCCACCTCACCTCGCCTTTTTAGAGAGAGAAAGAGAAGAGA
GCGAGCTCGACGAGGAGAGAGAGAGAGAGAGAGAGGAGTCACCTCACCTGCACCTGAGCT
AGAGAGAGAGAGAGAGAGAAGAGGAGGAGGGTGGTGGAGGAGGAGGCCGGGAGGGGGAGA
TGGAGAGGCCGGCGCCGGTGAGGAAGTCCCACACGTCGACGGCCGACCTGCTGACGTGGC
CGGAGGGCGCGGCCCAGGAGCTCGCCGCCGGGGCCACGCCGCCGCCCAACCGCCGGCCGC
ACCAGCCGTCGGAGGCGATCAGTAAGGTGGTGTTCGGCGGGCAGGTGACCGAGGAGGAGT
TCGAGAGCCTCAACAAGAGGAAACCATGCTCAGCTCCCAAATGGAAGGAGATGACAGGAA
GCGGCATATTTGCAGCGGAAGGCGAGGTTGAGGAAGACGAGTCAGCCAATGCTTCTGCAA
CGCCCGTCCGAACGGTTTCTAAGAATTATCAGGCCATTAGCACTATAAGTCATATCTCAT
TCGCGGAGGAAGAAAGTGTTTCTCCAAAAAAGCCGACTTCGATAGCTGAGGTGGCGAAGC
AGCGCGAGCTAAGTGGCACGCTTCAGAGCGAGGATGAGAGTAAGATGAAGAGGCAGATAT
CCAATGCGAAATCGAAGGAGCTCAGCGGCCATGACATCTTTGCTCCTCCAGAAGATCCCA
GGCCACGCAACTCCGCGAACGGCTCGACCTCACAAACCCCGGGCAAAAATGCACAAGTGA
GCACCATCACGTTCGGAGAGGCTGACACCGACAGCGTGGTGAAAACGGCGAAGAAGATCC
CGGAGAAGAAGCTGACGGACCTGACGGGCAACGATATCTTCAAAGGCGATGCTGCCCCGG
GGACGGCGGAGAAGCACCTGAGCACGGCGAAGCTGAAGGAGATGACCGGCAGCGACATCT
TCGCGGACGGCAAAGCGCCGTCGCGGGACTACCTTGGTGGGATCCGCAAGCCCCCCGGCG
GCGAGAGCAGCATCGCGCTGGTCTAACAAACAAAACAAAACCCCCTGATGGATGGACATA
GCCTACTACGACATTCTTGGACTCGTCCTCCCCGTTGCCGTCATTAGGAGTGATTTTTTT
CTTCTAGGAGAGCTTCTTTGATGAGACTGATCGATTGAACTGCTGCTGCATGGTTTGTTT
CCGTTTCTTTTTCTCGGCTTCTTTTTTTTTTGTTTAATCTGATCGATGATGGTGTGGGTG
CGGCAAAGCAACGGTGATGGATATCTAATTTAACATTTGGTGTGC