Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0622100-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:25722884:25725402:1 gene:Os07g0622100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Ribosomal protein s6 RPS6-2. (Os07t0622100-01)
Sequence

ATGAAGTTCAACATCGCGAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGAC
GACCAGAAGCTGCGTGCATTTTTTGACAAGAGGATCTCTCAGGAGGTCAGTGGCGATGCT
CTGGGCGAGGAATTCAAGGGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGT
TTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGGC
ACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGT
GGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTTGGTGATTGTCAAGAAGGGTGAG
AATGACCTGCCTGGCCTTACTGACACTGAGAAGCCCAGGATGAGGGGACCCAAGAGGGCC
TCCAAGATCAGGAAGCTCTTCAACCTTTCCAAGGATGATGATGTCCGCAAATATGTCAAC
ACCTACCGCAGGACATTCACTACCAAGAATGGCAAGAAGGTGAGCAAGGCTCCTAAGATC
CAGCGTCTTGTGACTCCCCTCACCCTCCAGAGGAAGCGTGCCAGAATCGCTGACAAGAAG
AAGAGGATCGCCAAGAAGAAGTCGGAGGCTGCTGAGTACCAGAAGCTTCTTGCCCAGAGG
CTCAAGGAGCAGAGGGAACGCCGGAGCGAGAGCTTGGCAAAGAGGAGGTCCAAGCTTTCT
TCTGCTGCCAAGGCTGCTGCTACCACCGCCTAA

Peptide Sequence

PEP ID

Os07t0622100-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:25722884:25725402:1 gene:Os07g0622100 transcript:Os07t0622100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Ribosomal protein s6 RPS6-2. (Os07t0622100-01)
Sequence

MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG
FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE
NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVSKAPKI
QRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRRSKLS
SAAKAAATTA

Transcript Sequence

Transcript ID

Os07t0622100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:25722884:25725402:1 gene:Os07g0622100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Ribosomal protein s6 RPS6-2. (Os07t0622100-01)
Sequence

CTCAAAAACCCTAGCCCTCGCGCCGCCGCCGCCGCCGCTCCCCCGCGCACTCGCCGCTCG
CCGCCCGCGAGCTCGCGCCGCTTCGCAACCATGAAGTTCAACATCGCGAACCCGACCACC
GGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTGCGTGCATTTTTTGACAAG
AGGATCTCTCAGGAGGTCAGTGGCGATGCTCTGGGCGAGGAATTCAAGGGCTATGTCTTC
AAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCT
GGACGTGTCCGCCTTCTTCTTCACAGGGGCACACCTTGCTTCCGTGGGTATGGCAGGCGT
GATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTT
ATTAACTTGGTGATTGTCAAGAAGGGTGAGAATGACCTGCCTGGCCTTACTGACACTGAG
AAGCCCAGGATGAGGGGACCCAAGAGGGCCTCCAAGATCAGGAAGCTCTTCAACCTTTCC
AAGGATGATGATGTCCGCAAATATGTCAACACCTACCGCAGGACATTCACTACCAAGAAT
GGCAAGAAGGTGAGCAAGGCTCCTAAGATCCAGCGTCTTGTGACTCCCCTCACCCTCCAG
AGGAAGCGTGCCAGAATCGCTGACAAGAAGAAGAGGATCGCCAAGAAGAAGTCGGAGGCT
GCTGAGTACCAGAAGCTTCTTGCCCAGAGGCTCAAGGAGCAGAGGGAACGCCGGAGCGAG
AGCTTGGCAAAGAGGAGGTCCAAGCTTTCTTCTGCTGCCAAGGCTGCTGCTACCACCGCC
TAAGTTGGTTTAGAGCTTGAGATGTTTTAAAATCGTTCATTCCTGAGTTATAATAGCCCA
AGAACCTCTTGCACTATGTTCGATCAATCCACCCCAGCTACTTTCAGATTTCTCGAGTAA
TTGGTGCAATTTTGCATGAACATGCTGCCTTGTTTGGAATTCTTTTTTGAGTACCGGAGA
ATTACCATGTTAGTGTGTTGGTTTATGTTTTGAAGGTGGCCTTGTTATTCTGTTGC