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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0618600-02
CDS Infomation

cds chromosome:IRGSP-1.0:7:25531184:25534055:1 gene:Os07g0618600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os07t0618600-01);Similar to FYVE zinc finger family protein. (Os07t0618600-02)
Sequence

TTCACCACCTTCCGCCGCCGCCATCACTGCCGCAACTGCGGGAGGACGCTCTGCCACGAG
CACTCGTCGTACCATATGGCTCTCCCACAGTACGGGATATACACGGACGTCAGAGTCTGC
TATGATTGCTTCAACAAATCCTCCAGTCGTGGTGGTGTTGGCAATGCCGGTTCACCTGGG
AGTGTATCTAGTGCAGCTGACTCCTTTTCAGGGTTAAACTTGGGGGAAGATGATGCTTCA
TCACCTATGAAAAATTCAGCGTTTCACAGTGCACCTGCTGTTATTGAGTGCAAATGTGGA
ATGCCTTTGTGTATATGCGAGGCTCCGAAACCAGAACCTGTGCCTGTAAAGAGTATCAGC
ACAACTTCCTCAAGTGCACAGTCGAATCCTAGGCCAAAAAAATCTTCTACCAATCAACAA
TCTGCTGAATCAAGTGTCAAGAAGGCTTCGGCCACTTCAAGCAGCAACTCAAGCTCATTC
TTAAATCTTGGCCTGATGAGCAATGATACTAATGATAAGGGTCCTTCTGAATATGATGTT
ACTGGGGAGGGACTGAGGGAAGCAATTAAGAGTGGGGATATTAAAGCTGTCAAGAAACTT
CTCAGCCAGGGAGTGGATTCTAATTACTGCGATAAGCAAGGATTTGCTTTGCTACATTTG
GCTGCACTATTTAACCAGACAGAGATTGCTCTTATTCTCATGGATAATGGAGCAAATATT
CAGAGCAAAAATGGACAAGGGGAAACTCCTTTGGATTGTGCTCCAGCCATGCTGCAATAC
AAGATGCGCCAGAGGATGGAAGAACTTGCGGCATCACAACGACCCTAG

Peptide Sequence

PEP ID

Os07t0618600-02
PEP Infomation

pep chromosome:IRGSP-1.0:7:25531184:25534055:1 gene:Os07g0618600 transcript:Os07t0618600-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os07t0618600-01);Similar to FYVE zinc finger family protein. (Os07t0618600-02)
Sequence

FTTFRRRHHCRNCGRTLCHEHSSYHMALPQYGIYTDVRVCYDCFNKSSSRGGVGNAGSPG
SVSSAADSFSGLNLGEDDASSPMKNSAFHSAPAVIECKCGMPLCICEAPKPEPVPVKSIS
TTSSSAQSNPRPKKSSTNQQSAESSVKKASATSSSNSSSFLNLGLMSNDTNDKGPSEYDV
TGEGLREAIKSGDIKAVKKLLSQGVDSNYCDKQGFALLHLAALFNQTEIALILMDNGANI
QSKNGQGETPLDCAPAMLQYKMRQRMEELAASQRP

Transcript Sequence

Transcript ID

Os07t0618600-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:25531184:25534055:1 gene:Os07g0618600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os07t0618600-01);Similar to FYVE zinc finger family protein. (Os07t0618600-02)
Sequence

CTTCACCACCTTCCGCCGCCGCCATCACTGCCGCAACTGCGGGAGGACGCTCTGCCACGA
GCACTCGTCGTACCATATGGCTCTCCCACAGTACGGGATATACACGGACGTCAGAGTCTG
CTATGATTGCTTCAACAAATCCTCCAGTCGTGGTGGTGTTGGCAATGCCGGTTCACCTGG
GAGTGTATCTAGTGCAGCTGACTCCTTTTCAGGGTTAAACTTGGGGGAAGATGATGCTTC
ATCACCTATGAAAAATTCAGCGTTTCACAGTGCACCTGCTGTTATTGAGTGCAAATGTGG
AATGCCTTTGTGTATATGCGAGGCTCCGAAACCAGAACCTGTGCCTGTAAAGAGTATCAG
CACAACTTCCTCAAGTGCACAGTCGAATCCTAGGCCAAAAAAATCTTCTACCAATCAACA
ATCTGCTGAATCAAGTGTCAAGAAGGCTTCGGCCACTTCAAGCAGCAACTCAAGCTCATT
CTTAAATCTTGGCCTGATGAGCAATGATACTAATGATAAGGGTCCTTCTGAATATGATGT
TACTGGGGAGGGACTGAGGGAAGCAATTAAGAGTGGGGATATTAAAGCTGTCAAGAAACT
TCTCAGCCAGGGAGTGGATTCTAATTACTGCGATAAGCAAGGATTTGCTTTGCTACATTT
GGCTGCACTATTTAACCAGACAGAGATTGCTCTTATTCTCATGGATAATGGAGCAAATAT
TCAGAGCAAAAATGGACAAGGGGAAACTCCTTTGGATTGTGCTCCAGCCATGCTGCAATA
CAAGATGCGCCAGAGGATGGAAGAACTTGCGGCATCACAACGACCCTAGTGATATTTTTC
TCCTCTTGTTCATGTGCCAAAGATGGTGCCCCCCCTTGCATGGCCCAGAATAAAACCATT
TTTACCAACCGAGGGGCCTCTTTGCTGTGGGTATAGTAGTATTTCTGTTGGCACCATCGC
CTACAAAATGTCAAAACAACACCAGCTCATAAACTGCATGTTTCGCCAGCTAAAAAAATA
ATTCATTGTGCTT