Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0616900-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:25435750:25439659:1 gene:Os07g0616900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os07t0616900-01)
Sequence

ATGGGGGCCCCGAATGAAGTGACATCGTACTCTTCCCTCTCCAAAATCGATAGCAACAAC
CAGGGAGGTCATCTATCTAGTCTAGTTCCAGCAAACATTTACCCAGCGCAGGATTATCTC
TATGAACCGTCCCTGGAGCCAGATTTCCCATCGGAGTACGATTCTAGAGAAGATCCATTT
GTTCCAACACGAGCTAGTTCAAATATCAATTTGAAGACTGTCCTAACTGGGCTGGCTGCT
ATTGTTTCGGGCACAAATAAGAACCAGGATAATACACTGCAGCAGCAAAGTTTCAGCACG
GATGTCTCATTTCTAGGATTTGACAAGGATGGTGATGTTAATGTACATCCATCTGTATGC
GTTCCTAGTGCGCCACCACTACTTGAAACAAATGCTTTACAATACAGTGCATACAGGGAG
GTGCTACAGGCAGATCCTCCAGAATGGTTACCAGATAGCTCTACCAGTGTGTGCCTGCAA
TGCAGTTTGCCTTTCACAGCTCTGACTCGTGGAAGGCACCATTGCCGGTTCTGTGGAGGT
ATTTTCTGTAAAGATTGTTCCAAGGGAAGATGCTTGATGCCCATGAAGTTCAGGCAGCGT
GATCCTCAGAGAGTGTGTGATGCTTGCTACGATAGGCTCGATCCACTTCAGGGAATATTG
ATCAATTACAATAGCAATGCCATGCAGCCAGCAAAACATGATGTTATGGATTGGACAAGC
ACAAGAAGCTGGTTGAACTTGCCTGTTGGTTTATCAATGGAGTATGAGATATACAAGGCA
ACAAATACACTAAATAGATATTGCCAGGTTGCTAGATTAAACCCTGAGAAGTCCATCCCA
TCATCTATTCTAAAGGGAGCTAAGGGGCTTGCTGTGATAACAGTTGCCAAGGCGGGTGCA
GTTCTTACATACAAAGTTGGCACTGGCCTTGTAGTTGCCCGAAGATCAGATGGATCATGG
TCTGCCCCATCAGCAATTGCATCTGTTGGCCTGGGATGGGGAGTTCAGTTTGGTGGCGAA
CTGACAGATTTTATAATTGTACTTCATGATCGTAAGGCTGTCAAGGCATTCAGCAGTCGC
ATGCATCTTTCTCTTGGGGCAGGATTAAGTGCAGCAGCAGGACCAATTGGCAGGGCCTTT
GAAGCAGATGTTAGGGCCAGTGAAAAAGGTTCTGGGCTCTGCTACACTTACAGCTGTAGC
AAAGGTGCCTTTGTTGGGGTCTCATTGGAAGGAAATGTCGTGACAACCAGATCAGAGACC
AATCTACGCTTCTATGGCGATGCTTACTTGACCACAACTGATATCCTGTTTGGGAAGGTG
GAGAAACCCAGAGCCGCCCAGCCCCTGTACTCAGCTCTAGATGATCTATTCTCTAAAATG
GTTTACTAG

Peptide Sequence

PEP ID

Os07t0616900-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:25435750:25439659:1 gene:Os07g0616900 transcript:Os07t0616900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os07t0616900-01)
Sequence

MGAPNEVTSYSSLSKIDSNNQGGHLSSLVPANIYPAQDYLYEPSLEPDFPSEYDSREDPF
VPTRASSNINLKTVLTGLAAIVSGTNKNQDNTLQQQSFSTDVSFLGFDKDGDVNVHPSVC
VPSAPPLLETNALQYSAYREVLQADPPEWLPDSSTSVCLQCSLPFTALTRGRHHCRFCGG
IFCKDCSKGRCLMPMKFRQRDPQRVCDACYDRLDPLQGILINYNSNAMQPAKHDVMDWTS
TRSWLNLPVGLSMEYEIYKATNTLNRYCQVARLNPEKSIPSSILKGAKGLAVITVAKAGA
VLTYKVGTGLVVARRSDGSWSAPSAIASVGLGWGVQFGGELTDFIIVLHDRKAVKAFSSR
MHLSLGAGLSAAAGPIGRAFEADVRASEKGSGLCYTYSCSKGAFVGVSLEGNVVTTRSET
NLRFYGDAYLTTTDILFGKVEKPRAAQPLYSALDDLFSKMVY

Transcript Sequence

Transcript ID

Os07t0616900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:25435750:25439659:1 gene:Os07g0616900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os07t0616900-01)
Sequence

CCTCTCCTCTTCTCCGACGAAACCCCAATCCCCAACTCCGACGCTTCCTCCGCCCCGGCG
ATCGCCGCCACCCGAATCCCCCCGCGACCGCCTCCGATTGATTCGATCCGGTGATCTTGT
GTTGTTGCCACATGATTGTTGTCTCTAAATGATTCTATGGGGGCCCCGAATGAAGTGACA
TCGTACTCTTCCCTCTCCAAAATCGATAGCAACAACCAGGGAGGTCATCTATCTAGTCTA
GTTCCAGCAAACATTTACCCAGCGCAGGATTATCTCTATGAACCGTCCCTGGAGCCAGAT
TTCCCATCGGAGTACGATTCTAGAGAAGATCCATTTGTTCCAACACGAGCTAGTTCAAAT
ATCAATTTGAAGACTGTCCTAACTGGGCTGGCTGCTATTGTTTCGGGCACAAATAAGAAC
CAGGATAATACACTGCAGCAGCAAAGTTTCAGCACGGATGTCTCATTTCTAGGATTTGAC
AAGGATGGTGATGTTAATGTACATCCATCTGTATGCGTTCCTAGTGCGCCACCACTACTT
GAAACAAATGCTTTACAATACAGTGCATACAGGGAGGTGCTACAGGCAGATCCTCCAGAA
TGGTTACCAGATAGCTCTACCAGTGTGTGCCTGCAATGCAGTTTGCCTTTCACAGCTCTG
ACTCGTGGAAGGCACCATTGCCGGTTCTGTGGAGGTATTTTCTGTAAAGATTGTTCCAAG
GGAAGATGCTTGATGCCCATGAAGTTCAGGCAGCGTGATCCTCAGAGAGTGTGTGATGCT
TGCTACGATAGGCTCGATCCACTTCAGGGAATATTGATCAATTACAATAGCAATGCCATG
CAGCCAGCAAAACATGATGTTATGGATTGGACAAGCACAAGAAGCTGGTTGAACTTGCCT
GTTGGTTTATCAATGGAGTATGAGATATACAAGGCAACAAATACACTAAATAGATATTGC
CAGGTTGCTAGATTAAACCCTGAGAAGTCCATCCCATCATCTATTCTAAAGGGAGCTAAG
GGGCTTGCTGTGATAACAGTTGCCAAGGCGGGTGCAGTTCTTACATACAAAGTTGGCACT
GGCCTTGTAGTTGCCCGAAGATCAGATGGATCATGGTCTGCCCCATCAGCAATTGCATCT
GTTGGCCTGGGATGGGGAGTTCAGTTTGGTGGCGAACTGACAGATTTTATAATTGTACTT
CATGATCGTAAGGCTGTCAAGGCATTCAGCAGTCGCATGCATCTTTCTCTTGGGGCAGGA
TTAAGTGCAGCAGCAGGACCAATTGGCAGGGCCTTTGAAGCAGATGTTAGGGCCAGTGAA
AAAGGTTCTGGGCTCTGCTACACTTACAGCTGTAGCAAAGGTGCCTTTGTTGGGGTCTCA
TTGGAAGGAAATGTCGTGACAACCAGATCAGAGACCAATCTACGCTTCTATGGCGATGCT
TACTTGACCACAACTGATATCCTGTTTGGGAAGGTGGAGAAACCCAGAGCCGCCCAGCCC
CTGTACTCAGCTCTAGATGATCTATTCTCTAAAATGGTTTACTAGTTCTACGTGTTCATG
CCAAAAAAAAAAAGGAAAAAAAGAAAAGGAAAAGCTCTCCATTACTCATTGATGTACACA
ATATGTATATAAAGAAAAAGGTAGGAAAATGTACAGCTTTTAAGTCCTGTTCGGATGGGT
CGATTTGGGTTAAAATCCCTTGCACGACTTATAGGTTCAAATGTGAAAAAGGTCCCAAAG
TATTTTATAATTCAAGTACCCAAATCTGAACAGACCAATTGGATTGTGTTCCACTGATAA
TCTCTCGGTACACATGTAAATATTATCATGATATTTCAGGCCCTGTTGTTACTTTAT