Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0607400-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:24961190:24964182:-1 gene:Os07g0607400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 20 description:Pectin lyase fold/virulence factor domain containing protein. (Os07t0607400-01)
Sequence	ATGGCCGCCACGGGCGTGCTCGTCGTCGTTGTGGCGCTCGTGTTCGCCGTGACGGTGGCT GGCGGCGGCGGCGCCGGAGTAGGAGGTGATGGCGGGTTCATCACGTGGGAGGACCTGAGC ATGCCGGCCGGGGCGGCGCGGAGCAGCACGTGGGACGACACGGCCGGCGGTGGCGGCGGC AAGAGGAGCGGCGGCGGCGGCGGCGGCGAGCAGCGGACGACGATCGTGGTGTCGCCGGAC GGGACGGGGCACTCGCGCACCGTGCAGGGCGCCGTCGACATGGTCCCCGCCGGCAACACG AGGAGGGTCAAGATCGTCGTCAGGCCGGGCGTCTACAGGGAGAAGGTGACGGTGCCGATC ACGAAGCCGTTCGTGTCGCTGATCGGCATGGGCACCGGCCACACGGTGATCACGTGGCAC TCGCGCGCGTCCGACGTCGGCGCGTCGGGCCACCAGGTGGGCACCTTCTACTCCGCCTCC GTCGCCGTCGAGGCCGACTACTTCTGCGCCAGCCACATCACCTTCGAGAACTCGGCGGCG GCGGCGGCGCCGGGGGCGGTGGGGCAGCAGGCGGTGGCGCTGAGGCTGTCCGGCGACAAG ACGGTGCTGTACAAGTGCAGGATACTGGGGACGCAGGACACGCTGTTCGACAACATCGGG AGGCACTACCTCTACAACTGCGACATCCAGGGCTCCATCGATTTCATCTTTGGCAACGCA AGGTCCTTGTACCAGGGTTGCACGCTGCACGCCGTGGCGACGAGCTACGGCGCGATCGCG GCGTCGCAGCGGAGCTCGCCGTCGGAGGAGTCCGGGTTCAGCTTCGTCGGCTGCCGGCTC ACCGGCTCCGGCATGCTCTACCTGGGAAGAGCATGGGGCAAGTACTCCAGAGTGGTGTAC TCCTACTGTGACCTCAGTGGCATCATCGTCCCCCAGGGATGGAGCGACTGGGGTGATCAA TCAAGAACAAAGTGA

Peptide Sequence

PEP ID	Os07t0607400-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:24961190:24964182:-1 gene:Os07g0607400 transcript:Os07t0607400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 20 description:Pectin lyase fold/virulence factor domain containing protein. (Os07t0607400-01)
Sequence	MAATGVLVVVVALVFAVTVAGGGGAGVGGDGGFITWEDLSMPAGAARSSTWDDTAGGGGG KRSGGGGGGEQRTTIVVSPDGTGHSRTVQGAVDMVPAGNTRRVKIVVRPGVYREKVTVPI TKPFVSLIGMGTGHTVITWHSRASDVGASGHQVGTFYSASVAVEADYFCASHITFENSAA AAAPGAVGQQAVALRLSGDKTVLYKCRILGTQDTLFDNIGRHYLYNCDIQGSIDFIFGNA RSLYQGCTLHAVATSYGAIAASQRSSPSEESGFSFVGCRLTGSGMLYLGRAWGKYSRVVY SYCDLSGIIVPQGWSDWGDQSRTK

Transcript Sequence

Transcript ID	Os07t0607400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:24961190:24964182:-1 gene:Os07g0607400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 20 description:Pectin lyase fold/virulence factor domain containing protein. (Os07t0607400-01)
Sequence	GTGTGTTCCAAATTAATCCGCGTGGTTAATTAGCTCTAGCTAGAGATCGGTAGCTCTCGA CTAGTTGGACATGGCCGCCACGGGCGTGCTCGTCGTCGTTGTGGCGCTCGTGTTCGCCGT GACGGTGGCTGGCGGCGGCGGCGCCGGAGTAGGAGGTGATGGCGGGTTCATCACGTGGGA GGACCTGAGCATGCCGGCCGGGGCGGCGCGGAGCAGCACGTGGGACGACACGGCCGGCGG TGGCGGCGGCAAGAGGAGCGGCGGCGGCGGCGGCGGCGAGCAGCGGACGACGATCGTGGT GTCGCCGGACGGGACGGGGCACTCGCGCACCGTGCAGGGCGCCGTCGACATGGTCCCCGC CGGCAACACGAGGAGGGTCAAGATCGTCGTCAGGCCGGGCGTCTACAGGGAGAAGGTGAC GGTGCCGATCACGAAGCCGTTCGTGTCGCTGATCGGCATGGGCACCGGCCACACGGTGAT CACGTGGCACTCGCGCGCGTCCGACGTCGGCGCGTCGGGCCACCAGGTGGGCACCTTCTA CTCCGCCTCCGTCGCCGTCGAGGCCGACTACTTCTGCGCCAGCCACATCACCTTCGAGAA CTCGGCGGCGGCGGCGGCGCCGGGGGCGGTGGGGCAGCAGGCGGTGGCGCTGAGGCTGTC CGGCGACAAGACGGTGCTGTACAAGTGCAGGATACTGGGGACGCAGGACACGCTGTTCGA CAACATCGGGAGGCACTACCTCTACAACTGCGACATCCAGGGCTCCATCGATTTCATCTT TGGCAACGCAAGGTCCTTGTACCAGGGTTGCACGCTGCACGCCGTGGCGACGAGCTACGG CGCGATCGCGGCGTCGCAGCGGAGCTCGCCGTCGGAGGAGTCCGGGTTCAGCTTCGTCGG CTGCCGGCTCACCGGCTCCGGCATGCTCTACCTGGGAAGAGCATGGGGCAAGTACTCCAG AGTGGTGTACTCCTACTGTGACCTCAGTGGCATCATCGTCCCCCAGGGATGGAGCGACTG GGGTGATCAATCAAGAACAAAGTGATCAACTTTCCTGCCATTTAATCACACACTCAATTT GCTGCTCTTGATTAAAATTACAGTTACAATTATAATTGCAGCTACTCTGTCAGGTTCACA TGGCATATTAATATTATTGATCGAAGAGATTATATTTTAGCTGAATTTTACTAGTTACCA ACTTACCATCCTCGATGATCAAATGGCATAGGAAGTGGTTGGGAGTTGCATTGCAGGCTC ACCAAACAGTCTTGATAGGGGAATTCAGTTACCACATGTGACAAGGCTGTTACCAAATGA GTTCCTTTTCTTTTCTGAAATCCTAGAGACGATACTGCCATATCATATCCGTCAGAAAAT GACAGAGAATGTGTCTGAATCTTCTGACAGGACGGTGCTGTTCGGGGAGTACAACTGCAA AGGGCCAGGGGCGAGCACGAAGCAGAGGGTGCCGTGGTCGCGGACGCTCACCTACGACGA GGCGCGGCCGTTCATCGGCCGGAGCTTCATCAACGGCGAGCAGTGGCTCCGGCTGTAGAT CATCGCCGATTCTTCACAAGTTCAGAAAGTTCAGACTGCTGCTGGTTCCTTCTCCACTGC AGTCTGCAGATAGAACATGTACCTAGTAGATATAATAGCTGACATGTAACGATGTACCAT GTAACAAACTTTGACATACATCCATATGTAGTGAGATGAGCAGCCCCATC