Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0604400-00
CDS Infomation	cds chromosome:IRGSP-1.0:7:24755706:24758207:-1 gene:Os07g0604400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BC1L7 description:Similar to COBRA-like protein 6. (Os07t0604400-00)
Sequence	ATGGCGGTGCTCGGCTCCCTTCTGCTCCTCATCCTCGCCGCCACGCTCTCTGTCGCTGTT GCTTATGATCCGCTCGACCCCAACGGCAACATCACCATCAAATGGGACGTCATGTCGTGG ACACCCGACGGATACGTCGCGATGGTGACGATCAACAACTACCAGACATACCGTCAGATA ATGGCGCCGGGGTGGACGGTGGGGTGGACGTGGGCGCGGCAGGAGGTGATCTGGTCCATG GTGGGCGCGCAGGCCACGGACCAGGGCGACTGCTCCCGCTTCAAGGCCAACCTCCCACAC TGCTGCCGCCGGACGCCCGCCGTCGTGGACCTCCTCCCCGGCGTCCCCTACAACCAGCAG ATCGCCAACTGCTGCCGGGGCGGCGTCCTCCCGGCGTACGGCCAGGCCCCCTCCGCCGCC GCCGCCGCGTTCCAGGTCAGCGTCGGCCAGGCCGGCACCACCAACCGCACCGTCAGGCTC CCCAGGAACTTCACCCTCCTCGGCCCCGGCCCCGGCTACACCTGTGGCCGCGCCAGGGTC GTCCCCTCCACCGTCTTCCTCACCGCCGATCGCCGCCGCAAGACCCAAGCCCTCATGACG TGGAACGTGACGTGCACGTACTCGCAGCACCTGGCGTCCAAGTACCCGTCGTGCTGCGTC TCCTTCTCCTCCTTCTACAACGACACCATCGTCCCCTGCGCCAAGTGCGCCTGCGGCTGC GACGCCCACAAGCCCTGCGTCCGGAGCGAGAGGGACGGGAAGAGGCTGGCGGTGACGGGG AAGAAGCACGACGCGAACGCGAACGCGCACGGGCGCGGCAACGGCGTCGCGGCGGCGGCA ATGGCGGCGCCGCTGCTGCAGTGCACGACGCACATGTGCCCGGTGAGGGTGCACTGGCAC GTGAAGCTCAACTACAGGGAGTACTGGCGCGCCAAGATCACCATCGTCAACTTCAACTAC CGGATGAACTACACCGGGTGGACGCTCGTTGCCCAGCACCCCAACCTCGACAACATCACC GAGGTCTTCAGCTTCGACTACAAGCCCGTCGTCTCCTACGGCTCCATCAATGATACGGCG ATGTTCTATGGGCTGAAGTACTTCAACGACCAGCTGATGGAGGCCGGGCCGCACGGGAAC GTGCAGTCGGAGGTGCTGATGAGGAAGGACGCGAGGACGTTCACGTTCAGGCAGGGATGG GCGTTCCCGAGGAAGGTCTACTTCAACGGCGACGAGTGCCAGATGCCGCCGCCGGACTCC TACCCTTACCTGCCCAACGCCGCTCCCCCGGCGGCGGCGTCGCTCGTCGGCTCCGCGGTG GCCATGGCGGCCTTGGTGTTCTTCCTCATGGCGTAG

Peptide Sequence

PEP ID	Os07t0604400-00
PEP Infomation	pep chromosome:IRGSP-1.0:7:24755706:24758207:-1 gene:Os07g0604400 transcript:Os07t0604400-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BC1L7 description:Similar to COBRA-like protein 6. (Os07t0604400-00)
Sequence	MAVLGSLLLLILAATLSVAVAYDPLDPNGNITIKWDVMSWTPDGYVAMVTINNYQTYRQI MAPGWTVGWTWARQEVIWSMVGAQATDQGDCSRFKANLPHCCRRTPAVVDLLPGVPYNQQ IANCCRGGVLPAYGQAPSAAAAAFQVSVGQAGTTNRTVRLPRNFTLLGPGPGYTCGRARV VPSTVFLTADRRRKTQALMTWNVTCTYSQHLASKYPSCCVSFSSFYNDTIVPCAKCACGC DAHKPCVRSERDGKRLAVTGKKHDANANAHGRGNGVAAAAMAAPLLQCTTHMCPVRVHWH VKLNYREYWRAKITIVNFNYRMNYTGWTLVAQHPNLDNITEVFSFDYKPVVSYGSINDTA MFYGLKYFNDQLMEAGPHGNVQSEVLMRKDARTFTFRQGWAFPRKVYFNGDECQMPPPDS YPYLPNAAPPAAASLVGSAVAMAALVFFLMA

Transcript Sequence

Transcript ID	Os07t0604400-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:24755706:24758207:-1 gene:Os07g0604400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BC1L7 description:Similar to COBRA-like protein 6. (Os07t0604400-00)
Sequence	CCAATGCAGGTCTAGTTAGTGTTTGTAGCTTGTTGCAAAGCAGCAGCTCGCAGCAATGGC GGTGCTCGGCTCCCTTCTGCTCCTCATCCTCGCCGCCACGCTCTCTGTCGCTGTTGCTTA TGATCCGCTCGACCCCAACGGCAACATCACCATCAAATGGGACGTCATGTCGTGGACACC CGACGGATACGTCGCGATGGTGACGATCAACAACTACCAGACATACCGTCAGATAATGGC GCCGGGGTGGACGGTGGGGTGGACGTGGGCGCGGCAGGAGGTGATCTGGTCCATGGTGGG CGCGCAGGCCACGGACCAGGGCGACTGCTCCCGCTTCAAGGCCAACCTCCCACACTGCTG CCGCCGGACGCCCGCCGTCGTGGACCTCCTCCCCGGCGTCCCCTACAACCAGCAGATCGC CAACTGCTGCCGGGGCGGCGTCCTCCCGGCGTACGGCCAGGCCCCCTCCGCCGCCGCCGC CGCGTTCCAGGTCAGCGTCGGCCAGGCCGGCACCACCAACCGCACCGTCAGGCTCCCCAG GAACTTCACCCTCCTCGGCCCCGGCCCCGGCTACACCTGTGGCCGCGCCAGGGTCGTCCC CTCCACCGTCTTCCTCACCGCCGATCGCCGCCGCAAGACCCAAGCCCTCATGACGTGGAA CGTGACGTGCACGTACTCGCAGCACCTGGCGTCCAAGTACCCGTCGTGCTGCGTCTCCTT CTCCTCCTTCTACAACGACACCATCGTCCCCTGCGCCAAGTGCGCCTGCGGCTGCGACGC CCACAAGCCCTGCGTCCGGAGCGAGAGGGACGGGAAGAGGCTGGCGGTGACGGGGAAGAA GCACGACGCGAACGCGAACGCGCACGGGCGCGGCAACGGCGTCGCGGCGGCGGCAATGGC GGCGCCGCTGCTGCAGTGCACGACGCACATGTGCCCGGTGAGGGTGCACTGGCACGTGAA GCTCAACTACAGGGAGTACTGGCGCGCCAAGATCACCATCGTCAACTTCAACTACCGGAT GAACTACACCGGGTGGACGCTCGTTGCCCAGCACCCCAACCTCGACAACATCACCGAGGT CTTCAGCTTCGACTACAAGCCCGTCGTCTCCTACGGCTCCATCAATGATACGGCGATGTT CTATGGGCTGAAGTACTTCAACGACCAGCTGATGGAGGCCGGGCCGCACGGGAACGTGCA GTCGGAGGTGCTGATGAGGAAGGACGCGAGGACGTTCACGTTCAGGCAGGGATGGGCGTT CCCGAGGAAGGTCTACTTCAACGGCGACGAGTGCCAGATGCCGCCGCCGGACTCCTACCC TTACCTGCCCAACGCCGCTCCCCCGGCGGCGGCGTCGCTCGTCGGCTCCGCGGTGGCCAT GGCGGCCTTGGTGTTCTTCCTCATGGCGTAGTGCTTAGAA