Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0603300-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:24664328:24669321:-1 gene:Os07g0603300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Grain Length on Chromosome 7, grain width QTL on chromosome 7 description:TON1 RECRUIT MOTIF (TRM)-containing protein, Regulation of grain size and shape (Os07t0603300-01)
Sequence	ATGCCTCCGGCGAGGGTGCTCGGCGGCGGTGGTGGAGGAGGGGGGTTGGGGGACGAGGCG CCGGAGCTGGAGAGGCAGATGGGGTGCATGGCCGGCATCTTCCAGATCTTCGACCGCCGC CAGCGCCTGCTCACCGCGCGCCGCCGCCGCCCGCCGCCCAAGATGCTGCCCCCGGGCCCA GGCCATACTCTTCCAAGAAGCAGCAGCAATGTTGCAGCGCAGAGCTCAAGTACCTCCAAG ATCGTTCTGGAGAAAACATTCAGCAAGAGCATGACCGAGAACAGTAGCCTTTCAATAGAG TCATCAAGGGCTTCCTGTTCTTCCTCCTCATGCTCATCCTTTTCATCACTTGATGGCAAC AAATCGATCCAACAAGAGCTGCCATACATCAACGAGCAGCTCTTTGTACAGAGGCCACTG AAGAGCTCACCAAGTCTGAAGGACCCAGTCATGGACACCAGGTCTGGACAGTCAAACATT GGCTTCAGAGACATTGTGAAGGACTCCATTAACCGGGACACCGGAGGCCTTACTGTCAAG ACCTCGGTGAAGGATGCAAGGAGGAATGGGCAGTACAAAGACTCACCAAGGCCCTTGCTG CTCTCCAAATCAATGGATGGGACCTACGTCATCGGGATCGATAGGAGCACCAAGGTCCCT GCTAATGCTGTTGAATCCAGCAGGCGATTCCCAGAGCAGTCGCGCTTCTCATGCGATGAT CGGCGGCTCCTGAGGCCAGTTGAAGCTCAAGAGAACAAGAAGCCTTCCACAAGGCTCAAA GAGCTTCCCAGACTGTCCTTGGACAGTAGGAAAGAAACCCTGAGCTCGAGTTCTCGCCAG AAGACCTTCAGTTACAGGAGAACCGACGACAGTCTCATGGACGCTCTTAGGCCTCAAGAT TCCCCAGGCCATAGGCGTGCCAGCAGTGTCATTGCCAAGCTGATGGGGTTGGAAGAAGCA CCCAATGCTACAGGGGTGCTAACTGTTGATAGCTACGAGCCTGAAAGATCACCAAGACCA GCAGAAGACACACAGAAGGAGCATCCAGTACCTTCCCCTAGAAGATTTTGTCAGGATCCA CGCGAGTCGCTGCCAAAAGATGAGTCTCCGGCAATGAAAACCAAGCCTTCTCCAAGAATT CTTACTGAATCTGCTCCTTGGAGGCAGCAGGAGAAGATTGCCACCAGTAGCAAGGCTTCA CAATGCCGAGATGCTGAAGTTCGACCAAGGACTGCATCTCTCTATGCCTACATTGAGAGA AGGGGCGGGGGGCTTGAGTTCTTGGAGTGCAACAAGGACTTCAGGGCTCTCAGGATACTG GAAGCGCTGCACGCAAAGGATGCCAAGCGCCAGAACGATGGCAATGGCGCATTAACAGTG GCTGCTCAGCAGGCAGGGGATGCACTGAACACCAGTTCCAGACACTTCCAGCCTCCCATT GTAGTCATGAAGCCAGCAAGAAGCACTGAGAAGCAGCCAGGGGTTTCACTTGCTTCAGTT GATCCCCTTGCAGGGTTCAGAAACCTCAGGAAGCTGCAGGCCAGAGATGCGCCTTGCATT GGCGAGCATGAGACCAGCACAAATGAGAAGGTCCATTCTCGCATTTCAAGGGCACAATCC AAGTCCGATGAACCTGCTAGCCGTGCAAGCTCTCCAAGGCCTACAGGATCATCAAGCCCC AGGACAGTGCAGCGGAAGGCAGAGTCAGAAAGGAGGTCTCGTCCACCTGTCTCACCGAAG TCCCCAAGCAAGAAGTCCAGTGAAGCAGCCTCTCCTGGAGGAAGAACAAGAACAAAGCCT TCTCAAGGGAAGAACCACCGTGACAATGAGGTCTCGAAGAGTCCAAGAAGCAGAATCAGC ATGGTGAAGGAGATCGACATAAGCATCATGGATTTTCAAAAGCCCCTAGCATCGACACCA AGTCACAAGGGAACTCCTTCAGTTCTTGCTTCAGATCAGAAGATTAATTCACTGGAGAAT GCCCCAAGTCCCATCTCTGTCCTCGACACGTCATATTACCATACAAGACTGTCATATTCA TTCAAAGATGGGGAGACACATTCTTCAGAGGAGTGCTGGAACCCGAACAGCCTGCCTGAC ACGCCACAGTCCAAGACGAGCAGTGAAGTCAGCCAGATCAAACCAGAAAATTTTGAGGCC CTCATCCAGAAGCTTGAGCAATTGCAGTCAATGAATGATGAAGTTGCAAACAAGAAAGAT CATCAGTACATTTACGAGATACTCTTAGCATCTGGCCTCCTGCACAAAGAACTTAGCTTC GTAGCCATGCCTGGTCAAGCATGGCCATCAAGCTGCCTGATCAATCCAGAGCTCTTCCTC ATTCTTGAACAAACAAAGCCAGATTTTGCTTCAGCAGACCAAACTGTTACCAAGAGCTCC AAAGCTAACACAGAAAAGCTTCATCGAAGAATTGTATTCGATCTGGTAAACGAAATTACA GCTCAGAAGATGAACATTCATTGCTCGGCAAGTCAGTCAGCCAAGTCGCTTCAATTAAGG AAGTACAACGGATGGCGACTTTTTAAGGACCTGTGCACAGAGGTTGACAGGCTTCAATCT GAGAGTTCAGCGATAAAATGCTCTGAAGAGGATGGGGATGAAAGAATGCTATTGGTTGAG GATCCACTGAATGGAATAGAAGATTGGAGCTTCGATAGTGAATCGCCAAGCACGGTTTTG GAGATCGAAAGATTAATCTACAAGGACCTCATTGACGAGGTCATATGGGATGAGGCCACA GGGAAGATGCAAGGTGGACAGTGGAACCTAAAGAGGCAGCTGTCATTTAGTAGTACAAGC TGA

Peptide Sequence

PEP ID	Os07t0603300-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:24664328:24669321:-1 gene:Os07g0603300 transcript:Os07t0603300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Grain Length on Chromosome 7, grain width QTL on chromosome 7 description:TON1 RECRUIT MOTIF (TRM)-containing protein, Regulation of grain size and shape (Os07t0603300-01)
Sequence	MPPARVLGGGGGGGGLGDEAPELERQMGCMAGIFQIFDRRQRLLTARRRRPPPKMLPPGP GHTLPRSSSNVAAQSSSTSKIVLEKTFSKSMTENSSLSIESSRASCSSSSCSSFSSLDGN KSIQQELPYINEQLFVQRPLKSSPSLKDPVMDTRSGQSNIGFRDIVKDSINRDTGGLTVK TSVKDARRNGQYKDSPRPLLLSKSMDGTYVIGIDRSTKVPANAVESSRRFPEQSRFSCDD RRLLRPVEAQENKKPSTRLKELPRLSLDSRKETLSSSSRQKTFSYRRTDDSLMDALRPQD SPGHRRASSVIAKLMGLEEAPNATGVLTVDSYEPERSPRPAEDTQKEHPVPSPRRFCQDP RESLPKDESPAMKTKPSPRILTESAPWRQQEKIATSSKASQCRDAEVRPRTASLYAYIER RGGGLEFLECNKDFRALRILEALHAKDAKRQNDGNGALTVAAQQAGDALNTSSRHFQPPI VVMKPARSTEKQPGVSLASVDPLAGFRNLRKLQARDAPCIGEHETSTNEKVHSRISRAQS KSDEPASRASSPRPTGSSSPRTVQRKAESERRSRPPVSPKSPSKKSSEAASPGGRTRTKP SQGKNHRDNEVSKSPRSRISMVKEIDISIMDFQKPLASTPSHKGTPSVLASDQKINSLEN APSPISVLDTSYYHTRLSYSFKDGETHSSEECWNPNSLPDTPQSKTSSEVSQIKPENFEA LIQKLEQLQSMNDEVANKKDHQYIYEILLASGLLHKELSFVAMPGQAWPSSCLINPELFL ILEQTKPDFASADQTVTKSSKANTEKLHRRIVFDLVNEITAQKMNIHCSASQSAKSLQLR KYNGWRLFKDLCTEVDRLQSESSAIKCSEEDGDERMLLVEDPLNGIEDWSFDSESPSTVL EIERLIYKDLIDEVIWDEATGKMQGGQWNLKRQLSFSSTS

Transcript Sequence

Transcript ID	Os07t0603300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:24664328:24669321:-1 gene:Os07g0603300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Grain Length on Chromosome 7, grain width QTL on chromosome 7 description:TON1 RECRUIT MOTIF (TRM)-containing protein, Regulation of grain size and shape (Os07t0603300-01)
Sequence	CTGCATGGCATTCGCACGCCATTGACACATATCTCATCATACCATCACCATACCACATCT CATCTCACGCGTCCCAAAGAAAGTGATAGTGTACGTACCTCTGCTTGCTCCTTGGCTTTC TGAGCTGAGCTGCTCTGCAGTTGGATGTGCGTGAGCTGGTGATCTGGGAGGAGTCGGAGT CGGAGGAGGAGATGCCTCCGGCGAGGGTGCTCGGCGGCGGTGGTGGAGGAGGGGGGTTGG GGGACGAGGCGCCGGAGCTGGAGAGGCAGATGGGGTGCATGGCCGGCATCTTCCAGATCT TCGACCGCCGCCAGCGCCTGCTCACCGCGCGCCGCCGCCGCCCGCCGCCCAAGATGCTGC CCCCGGGCCCAGGCCATACTCTTCCAAGAAGCAGCAGCAATGTTGCAGCGCAGAGCTCAA GTACCTCCAAGATCGTTCTGGAGAAAACATTCAGCAAGAGCATGACCGAGAACAGTAGCC TTTCAATAGAGTCATCAAGGGCTTCCTGTTCTTCCTCCTCATGCTCATCCTTTTCATCAC TTGATGGCAACAAATCGATCCAACAAGAGCTGCCATACATCAACGAGCAGCTCTTTGTAC AGAGGCCACTGAAGAGCTCACCAAGTCTGAAGGACCCAGTCATGGACACCAGGTCTGGAC AGTCAAACATTGGCTTCAGAGACATTGTGAAGGACTCCATTAACCGGGACACCGGAGGCC TTACTGTCAAGACCTCGGTGAAGGATGCAAGGAGGAATGGGCAGTACAAAGACTCACCAA GGCCCTTGCTGCTCTCCAAATCAATGGATGGGACCTACGTCATCGGGATCGATAGGAGCA CCAAGGTCCCTGCTAATGCTGTTGAATCCAGCAGGCGATTCCCAGAGCAGTCGCGCTTCT CATGCGATGATCGGCGGCTCCTGAGGCCAGTTGAAGCTCAAGAGAACAAGAAGCCTTCCA CAAGGCTCAAAGAGCTTCCCAGACTGTCCTTGGACAGTAGGAAAGAAACCCTGAGCTCGA GTTCTCGCCAGAAGACCTTCAGTTACAGGAGAACCGACGACAGTCTCATGGACGCTCTTA GGCCTCAAGATTCCCCAGGCCATAGGCGTGCCAGCAGTGTCATTGCCAAGCTGATGGGGT TGGAAGAAGCACCCAATGCTACAGGGGTGCTAACTGTTGATAGCTACGAGCCTGAAAGAT CACCAAGACCAGCAGAAGACACACAGAAGGAGCATCCAGTACCTTCCCCTAGAAGATTTT GTCAGGATCCACGCGAGTCGCTGCCAAAAGATGAGTCTCCGGCAATGAAAACCAAGCCTT CTCCAAGAATTCTTACTGAATCTGCTCCTTGGAGGCAGCAGGAGAAGATTGCCACCAGTA GCAAGGCTTCACAATGCCGAGATGCTGAAGTTCGACCAAGGACTGCATCTCTCTATGCCT ACATTGAGAGAAGGGGCGGGGGGCTTGAGTTCTTGGAGTGCAACAAGGACTTCAGGGCTC TCAGGATACTGGAAGCGCTGCACGCAAAGGATGCCAAGCGCCAGAACGATGGCAATGGCG CATTAACAGTGGCTGCTCAGCAGGCAGGGGATGCACTGAACACCAGTTCCAGACACTTCC AGCCTCCCATTGTAGTCATGAAGCCAGCAAGAAGCACTGAGAAGCAGCCAGGGGTTTCAC TTGCTTCAGTTGATCCCCTTGCAGGGTTCAGAAACCTCAGGAAGCTGCAGGCCAGAGATG CGCCTTGCATTGGCGAGCATGAGACCAGCACAAATGAGAAGGTCCATTCTCGCATTTCAA GGGCACAATCCAAGTCCGATGAACCTGCTAGCCGTGCAAGCTCTCCAAGGCCTACAGGAT CATCAAGCCCCAGGACAGTGCAGCGGAAGGCAGAGTCAGAAAGGAGGTCTCGTCCACCTG TCTCACCGAAGTCCCCAAGCAAGAAGTCCAGTGAAGCAGCCTCTCCTGGAGGAAGAACAA GAACAAAGCCTTCTCAAGGGAAGAACCACCGTGACAATGAGGTCTCGAAGAGTCCAAGAA GCAGAATCAGCATGGTGAAGGAGATCGACATAAGCATCATGGATTTTCAAAAGCCCCTAG CATCGACACCAAGTCACAAGGGAACTCCTTCAGTTCTTGCTTCAGATCAGAAGATTAATT CACTGGAGAATGCCCCAAGTCCCATCTCTGTCCTCGACACGTCATATTACCATACAAGAC TGTCATATTCATTCAAAGATGGGGAGACACATTCTTCAGAGGAGTGCTGGAACCCGAACA GCCTGCCTGACACGCCACAGTCCAAGACGAGCAGTGAAGTCAGCCAGATCAAACCAGAAA ATTTTGAGGCCCTCATCCAGAAGCTTGAGCAATTGCAGTCAATGAATGATGAAGTTGCAA ACAAGAAAGATCATCAGTACATTTACGAGATACTCTTAGCATCTGGCCTCCTGCACAAAG AACTTAGCTTCGTAGCCATGCCTGGTCAAGCATGGCCATCAAGCTGCCTGATCAATCCAG AGCTCTTCCTCATTCTTGAACAAACAAAGCCAGATTTTGCTTCAGCAGACCAAACTGTTA CCAAGAGCTCCAAAGCTAACACAGAAAAGCTTCATCGAAGAATTGTATTCGATCTGGTAA ACGAAATTACAGCTCAGAAGATGAACATTCATTGCTCGGCAAGTCAGTCAGCCAAGTCGC TTCAATTAAGGAAGTACAACGGATGGCGACTTTTTAAGGACCTGTGCACAGAGGTTGACA GGCTTCAATCTGAGAGTTCAGCGATAAAATGCTCTGAAGAGGATGGGGATGAAAGAATGC TATTGGTTGAGGATCCACTGAATGGAATAGAAGATTGGAGCTTCGATAGTGAATCGCCAA GCACGGTTTTGGAGATCGAAAGATTAATCTACAAGGACCTCATTGACGAGGTCATATGGG ATGAGGCCACAGGGAAGATGCAAGGTGGACAGTGGAACCTAAAGAGGCAGCTGTCATTTA GTAGTACAAGCTGAATATGCTTGGCAATACATGTTTCCCCTAGGAAGCTTAGCAACTACA CTACACTAGTGAATGTAACATCTTGTATTTTGCTGAAGATTAAACTATAGAAGAAATATA AATATTCC