Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0592200-03
CDS Infomation	cds chromosome:IRGSP-1.0:7:24129717:24134715:-1 gene:Os07g0592200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:aspartic protease 65 description:Aspartic protease, Pollen germination and pollen tube growth (Os07t0592200-02);Similar to predicted protein. (Os07t0592200-03)
Sequence	AAGATATTCAACAGCAAACATGGCACTGTCTTAGATAGTGGAACCACATATGCTTACCTG CCTGAACAAGCATTTGTTGCATTTAAAGATGCTGTGACAAATAAAGTAAATTCTCTGAAG AAAATCCGTGGCCCAGATCCAAATTATAAAGACATCTGCTTTGCAGGTGCTGGAAGGAAC GTCTCCCAATTATCAGAGGTATTTCCAGATGTTGACATGGTATTTGGAAATGGGCAGAAG CTTTCGCTTTCACCTGAAAACTATTTGTTCCGGCATTCGAAGGTTGAAGGGGCTTATTGC TTGGGTGTGTTTCAGAATGGAAAAGATCCGACAACACTATTAGGGGGAATTGTTGTCCGT AATACTCTTGTAACCTATGACCGTCACAATGAGAAGATTGGCTTTTGGAAAACTAACTGT TCAGAGTTGTGGGAGAGGCTCCATATTAGTGAAGTTCCTTCATCAGCACCTTCAGATTCA GAGGGAGATATGGCACCAGCTCCTGCTCCTAGTGGTTTGCCTGAATTTGATGTTGGCCTA ATCACTGTTGATATGTCCATAAATGTTACTTATCCAAACCTGAAACCTCACCTCCATGAG CTGGCTGAGCTTATAGCTAAAGAGCTGGACATTGACTCCCGTCAGGTTCGAGTTATGAAT GTTACAAGCCAAGGAAACTCTACTCTAATCAGATGGGGGATTTTTCCAGCTGGACCTTCT AATTCTATGACTAATACAACAGCAATGGGTATCATTTATCGGTTGACCCAACATCACGTC CAGTTGCCTGAAAATCTTGGCAGTTATCAGTTACTTGAATGGAATGTGCAGCCTTTATCC AAGAGGTCATGGTTCCGAGATCATGTAGTCTCTATACTGCTTGGAATTTTGCTAGTTGTT TTGCTGACTTTATCGGCCCTTTTAGTACTGATTGTCTGGAGAAAGAAATTTAGAGGTCAA GCGGCATATAGACCTGTGGATTCAGCAGTTCCTGAGCAAGAGCTCCAACCGCTATAA

Peptide Sequence

PEP ID	Os07t0592200-03
PEP Infomation	pep chromosome:IRGSP-1.0:7:24129717:24134715:-1 gene:Os07g0592200 transcript:Os07t0592200-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:aspartic protease 65 description:Aspartic protease, Pollen germination and pollen tube growth (Os07t0592200-02);Similar to predicted protein. (Os07t0592200-03)
Sequence	KIFNSKHGTVLDSGTTYAYLPEQAFVAFKDAVTNKVNSLKKIRGPDPNYKDICFAGAGRN VSQLSEVFPDVDMVFGNGQKLSLSPENYLFRHSKVEGAYCLGVFQNGKDPTTLLGGIVVR NTLVTYDRHNEKIGFWKTNCSELWERLHISEVPSSAPSDSEGDMAPAPAPSGLPEFDVGL ITVDMSINVTYPNLKPHLHELAELIAKELDIDSRQVRVMNVTSQGNSTLIRWGIFPAGPS NSMTNTTAMGIIYRLTQHHVQLPENLGSYQLLEWNVQPLSKRSWFRDHVVSILLGILLVV LLTLSALLVLIVWRKKFRGQAAYRPVDSAVPEQELQPL

Transcript Sequence

Transcript ID	Os07t0592200-03
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:24129717:24134715:-1 gene:Os07g0592200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:aspartic protease 65 description:Aspartic protease, Pollen germination and pollen tube growth (Os07t0592200-02);Similar to predicted protein. (Os07t0592200-03)
Sequence	AAGATATTCAACAGCAAACATGGCACTGTCTTAGATAGTGGAACCACATATGCTTACCTG CCTGAACAAGCATTTGTTGCATTTAAAGATGCTGTGACAAATAAAGTAAATTCTCTGAAG AAAATCCGTGGCCCAGATCCAAATTATAAAGACATCTGCTTTGCAGGTGCTGGAAGGAAC GTCTCCCAATTATCAGAGGTATTTCCAGATGTTGACATGGTATTTGGAAATGGGCAGAAG CTTTCGCTTTCACCTGAAAACTATTTGTTCCGGCATTCGAAGGTTGAAGGGGCTTATTGC TTGGGTGTGTTTCAGAATGGAAAAGATCCGACAACACTATTAGGGGGAATTGTTGTCCGT AATACTCTTGTAACCTATGACCGTCACAATGAGAAGATTGGCTTTTGGAAAACTAACTGT TCAGAGTTGTGGGAGAGGCTCCATATTAGTGAAGTTCCTTCATCAGCACCTTCAGATTCA GAGGGAGATATGGCACCAGCTCCTGCTCCTAGTGGTTTGCCTGAATTTGATGTTGGCCTA ATCACTGTTGATATGTCCATAAATGTTACTTATCCAAACCTGAAACCTCACCTCCATGAG CTGGCTGAGCTTATAGCTAAAGAGCTGGACATTGACTCCCGTCAGGTTCGAGTTATGAAT GTTACAAGCCAAGGAAACTCTACTCTAATCAGATGGGGGATTTTTCCAGCTGGACCTTCT AATTCTATGACTAATACAACAGCAATGGGTATCATTTATCGGTTGACCCAACATCACGTC CAGTTGCCTGAAAATCTTGGCAGTTATCAGTTACTTGAATGGAATGTGCAGCCTTTATCC AAGAGGTCATGGTTCCGAGATCATGTAGTCTCTATACTGCTTGGAATTTTGCTAGTTGTT TTGCTGACTTTATCGGCCCTTTTAGTACTGATTGTCTGGAGAAAGAAATTTAGAGGTCAA GCGGCATATAGACCTGTGGATTCAGCAGTTCCTGAGCAAGAGCTCCAACCGCTATAATTT GGAGTGGTTCAACGGAGTAAACATATAGGCGATTCTTTGGTAGAAATACCGTTGTGCGGG CTGCCATGTTGCAGCGGGTTCACATCCGCTGCTGGGAGTTGCCCTTTTTCTTTGTATGTA ACACAAGCTACAAGCTTACAGAAGAAGCACAAGATTACATAACTTCTCGATTCAGCACTT AGAGCCTCTGTTCATAAACTGTCTAGCGATTCAGATCAAGAGCTTCCTCTTGTAGCTTAC AGTAGAAGAAGGTTTTGTTCGTGTAATGTAGATTAAGTAGAATAGAGCAAGGCACAAAAG CACAGCAGCCATGGACGGAATGTTGTATTATCTAGTATCTGATAAGTGCTGAGGATATTC GGCTTC