Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0588600-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:23973340:23974261:1 gene:Os07g0588600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os07t0588600-01)
Sequence

ATGGCGCTCGACGGGAAGCCACCGGTGCCGCCGCCGTCCACGCCGCCGATGGACTCGTGG
GCCTGCGGTGGTCGCCGCTCCAAGCGCCGCGGCGGCGGCGGCGGGAGCAGCGGGAGTAGT
GGCAGCTCCGGCGGCGGCGGCGGCGGCGAGTCCGAGGAGGAGTACCTCGCGGCCTGCCTC
TTGATGCTCGCGCATGGCGTCCGCGACGAGGCCGAGGTCGTCGGCGTCGCGGCGGCGACG
GCGAAGCCACAGCATGGGTACGAGTGCTCGGTGTGCGGCAAGGTGTACGGGTCCTACCAG
GCGCTGGGCGGGCACAAGACGAGCCACCGCAAGCCGCCGTCGCCGGCGGCCGAACCGGCG
GCCGGCGAAGAGCCGTCCTCCGGCGGGGTGGCCGGCGAGGCGAAGGTGCACCGTTGCTCC
ATCTGCCTCCGCACGTTCCCGTCCGGGCAGGCGCTGGGCGGGCACAAGCGGCTGCACTAC
GAGGGCGGCGCCGTCGGAGACGCCGTCAAGGAGAAGAACTCCCTGAAGACCAAGGCGGCG
GTGGCGACAGCGGTGCTGAAGGACTTCGACCTGAACCTGCCGGCCGCGGCGACGACGGCG
GGGGACGAGGCCGAGAGCTCACCACCGGAGGCCAAGAGAGCACGTCTGCTGCTTCTCGTC
TAA

Peptide Sequence

PEP ID

Os07t0588600-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:23973340:23974261:1 gene:Os07g0588600 transcript:Os07t0588600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os07t0588600-01)
Sequence

MALDGKPPVPPPSTPPMDSWACGGRRSKRRGGGGGSSGSSGSSGGGGGGESEEEYLAACL
LMLAHGVRDEAEVVGVAAATAKPQHGYECSVCGKVYGSYQALGGHKTSHRKPPSPAAEPA
AGEEPSSGGVAGEAKVHRCSICLRTFPSGQALGGHKRLHYEGGAVGDAVKEKNSLKTKAA
VATAVLKDFDLNLPAAATTAGDEAESSPPEAKRARLLLLV

Transcript Sequence

Transcript ID

Os07t0588600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:23973340:23974261:1 gene:Os07g0588600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os07t0588600-01)
Sequence

ACCTCGCCCACGCACACCACCACCACTCTCCCCCTGCTACTTGTCCACCCCAATCTCATC
GCTCTTAGTCAACTCCGCCGAGAGAGACTGATCGTTCTCGTTCAGCTCTGCTCTGCCCAT
GGCGCTCGACGGGAAGCCACCGGTGCCGCCGCCGTCCACGCCGCCGATGGACTCGTGGGC
CTGCGGTGGTCGCCGCTCCAAGCGCCGCGGCGGCGGCGGCGGGAGCAGCGGGAGTAGTGG
CAGCTCCGGCGGCGGCGGCGGCGGCGAGTCCGAGGAGGAGTACCTCGCGGCCTGCCTCTT
GATGCTCGCGCATGGCGTCCGCGACGAGGCCGAGGTCGTCGGCGTCGCGGCGGCGACGGC
GAAGCCACAGCATGGGTACGAGTGCTCGGTGTGCGGCAAGGTGTACGGGTCCTACCAGGC
GCTGGGCGGGCACAAGACGAGCCACCGCAAGCCGCCGTCGCCGGCGGCCGAACCGGCGGC
CGGCGAAGAGCCGTCCTCCGGCGGGGTGGCCGGCGAGGCGAAGGTGCACCGTTGCTCCAT
CTGCCTCCGCACGTTCCCGTCCGGGCAGGCGCTGGGCGGGCACAAGCGGCTGCACTACGA
GGGCGGCGCCGTCGGAGACGCCGTCAAGGAGAAGAACTCCCTGAAGACCAAGGCGGCGGT
GGCGACAGCGGTGCTGAAGGACTTCGACCTGAACCTGCCGGCCGCGGCGACGACGGCGGG
GGACGAGGCCGAGAGCTCACCACCGGAGGCCAAGAGAGCACGTCTGCTGCTTCTCGTCTA
ACCCGCGGCGGTGGCGGCGGCGGCGGCGGCGGCTTGTGGTTTTGATGGTTTAGGTGCTTA
GCCGTTCCGGTTTAGGTTTCAGATTGATACCGGGTTGTTAATTTCATTGATTGATTTATT
TTAGTTCACTTCTGGTTGGGCG