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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0588400-00
CDS Infomation

cds chromosome:IRGSP-1.0:7:23957016:23958316:-1 gene:Os07g0588400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 128, ROOT HAIR DEFECTIVE-SIX LIKE 6 description:Similar to basic helix-loop-helix protein / bHLH protein. (Os07t0588400-00)
Sequence

ATGGAGAGATCATACACATCAGCGGTGCCGTTGATCGAGGCCGACGCGATGGCGCAGTTT
CTTGGAGCTCATGGTGATCACTGCTTCACCTACGAGCAAATGGATGAGTCCATGGAGGCA
ATGGCAGCGATGTTCTTGCCTGGCCTTGACACCGACTCCAATTCTTCTTCTGGTTGTCTC
AACTACGATGTGCCTCCACAATGCTGGCCTCAGCATGGCCATAGCTCTAGCGTCACCAGC
TTCCCTGATCCAGCTCATAGCTATGGAAGCTTTGAGTTCCCGGTCATGGATCCGTTCCCG
ATCGCCGATCTCGACGCGCATTGCGCCATCCCCTACCTTACTGAGGATCTGATCAGCCCT
CCACATGGCAACCATCCATCAGCAAGAGTGGAAGAAGCTACAAAGGTTGTTACACCAGTG
GCTACCAAGAGGAAGTCTAGTGCTGCCATGACGGCATCAAAGAAGAGCAAGAAGGCTGGC
AAAAAAGATCCTATTGGCAGCGACGAAGGCGGCAACACCTACATTGATACGCAAAGTTCT
AGCAGTTGCACCTCAGAGGAAGGAAACCTGGAGGGCAACGCGAAGCCGAGCTCGAAGAAG
ATGGGTACTAGGGCCAACCGTGGGGCGGCAACCGATCCCCAGAGTCTCTATGCAAGGAAG
AGGAGAGAGAGGATCAATGAAAGATTGAGGATCCTGCAGAACTTGGTTCCCAATGGAACA
AAGGTTGACATCAGTACAATGCTGGAGGAAGCAGTGCAGTATGTCAAATTTTTGCAACTT
CAGATTAAGTTGCTAAGCTCTGATGACACGTGGATGTATGCACCAATCGCTTACAATGGA
GTCAACATCAGCAATATTGATCTGAACATCTCTTCTCTGCAAAAATAA

Peptide Sequence

PEP ID

Os07t0588400-00
PEP Infomation

pep chromosome:IRGSP-1.0:7:23957016:23958316:-1 gene:Os07g0588400 transcript:Os07t0588400-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 128, ROOT HAIR DEFECTIVE-SIX LIKE 6 description:Similar to basic helix-loop-helix protein / bHLH protein. (Os07t0588400-00)
Sequence

MERSYTSAVPLIEADAMAQFLGAHGDHCFTYEQMDESMEAMAAMFLPGLDTDSNSSSGCL
NYDVPPQCWPQHGHSSSVTSFPDPAHSYGSFEFPVMDPFPIADLDAHCAIPYLTEDLISP
PHGNHPSARVEEATKVVTPVATKRKSSAAMTASKKSKKAGKKDPIGSDEGGNTYIDTQSS
SSCTSEEGNLEGNAKPSSKKMGTRANRGAATDPQSLYARKRRERINERLRILQNLVPNGT
KVDISTMLEEAVQYVKFLQLQIKLLSSDDTWMYAPIAYNGVNISNIDLNISSLQK

Transcript Sequence

Transcript ID

Os07t0588400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:23957016:23958316:-1 gene:Os07g0588400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 128, ROOT HAIR DEFECTIVE-SIX LIKE 6 description:Similar to basic helix-loop-helix protein / bHLH protein. (Os07t0588400-00)
Sequence

ATGGAGAGATCATACACATCAGCGGTGCCGTTGATCGAGGCCGACGCGATGGCGCAGTTT
CTTGGAGCTCATGGTGATCACTGCTTCACCTACGAGCAAATGGATGAGTCCATGGAGGCA
ATGGCAGCGATGTTCTTGCCTGGCCTTGACACCGACTCCAATTCTTCTTCTGGTTGTCTC
AACTACGATGTGCCTCCACAATGCTGGCCTCAGCATGGCCATAGCTCTAGCGTCACCAGC
TTCCCTGATCCAGCTCATAGCTATGGAAGCTTTGAGTTCCCGGTCATGGATCCGTTCCCG
ATCGCCGATCTCGACGCGCATTGCGCCATCCCCTACCTTACTGAGGATCTGATCAGCCCT
CCACATGGCAACCATCCATCAGCAAGAGTGGAAGAAGCTACAAAGGTTGTTACACCAGTG
GCTACCAAGAGGAAGTCTAGTGCTGCCATGACGGCATCAAAGAAGAGCAAGAAGGCTGGC
AAAAAAGATCCTATTGGCAGCGACGAAGGCGGCAACACCTACATTGATACGCAAAGTTCT
AGCAGTTGCACCTCAGAGGAAGGAAACCTGGAGGGCAACGCGAAGCCGAGCTCGAAGAAG
ATGGGTACTAGGGCCAACCGTGGGGCGGCAACCGATCCCCAGAGTCTCTATGCAAGGAAG
AGGAGAGAGAGGATCAATGAAAGATTGAGGATCCTGCAGAACTTGGTTCCCAATGGAACA
AAGGTTGACATCAGTACAATGCTGGAGGAAGCAGTGCAGTATGTCAAATTTTTGCAACTT
CAGATTAAGTTGCTAAGCTCTGATGACACGTGGATGTATGCACCAATCGCTTACAATGGA
GTCAACATCAGCAATATTGATCTGAACATCTCTTCTCTGCAAAAATAA