Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0584500-02
CDS Infomation

cds chromosome:IRGSP-1.0:7:23704931:23708852:1 gene:Os07g0584500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0584500-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0584500-02)
Sequence

ATGGAGGCGGACTCCGGGAAGCTCTTCGTCGGCGGCATCTCGTGGGAGACGGACGAGGAC
CGCCTCCGCGAGTACTTCAGCCGGTTCGGGGAGGTCACCGAGGCCGTCATCATGCGGGAC
CGCAACACCGGCCGCGCCCGTGGGTTCGGCTTCGTGGTCTTCACCGACGCAGGCGTCGCC
GAGCGGGTCACCATGGATAAGCACATGATCGACGGGCGCATGGTGGAAGCGAAGAAAGCT
GTTCCCAGGGACGACCAGAGCATCACCAGCAAGAACAATGGCAGCAGCATAGGGTCACCT
GGACCAGGCCGTACTAGAAAGATCTTTGTTGGAGGCTTGGCCTCTAATGTTACTGAGGTT
GAATTTAGAAGGTATTTTGAGCAATTTGGTGTGATTACGGATGTGGTTGTCATGTACGAC
CACAACACGCAGAGGCCTAGGGGCTTTGGATTCATCACCTATGACTCAGAAGATGCGGTG
GACAAGGCACTGCACAAGAACTTCCATGAGCTGAATGGTAAGATGGTTGAGGTCAAGAGA
GCTGTTCCAAAGGAGCAATCACCTGGACCTGCTGCACGTTCACCTGCGGGAGGGCAGAAC
TATGCTATGAGCAGGGTCCATAGCTTCTTGAATGGTTTCAACCAGGGTTATAACCCAAAC
CCTATTGGAGGTTATGGCATGAGGGTTGATGGAAGGTATGGTCTGCTTACAGGCGCACGG
AATGGATTCTCTTCATTTGGCCCTGGTTATGGAATGGGCATGAATTCTGAATCTGGGATG
AATGCGAATTTTGGCGCCAATTCTAGTTTTGTCAATAACTCCAATGGGCGGCAGATAGGT
TCATTCTACAATGGTAGTTCAAACAGATTAGGTAGTCCTATTGGTTATGTTGGTCTTAAT
GATGATTCAGGATCACTATTGAGTTCAATGTCAAGGAATGTTTGGGGTAATGAAAATCTG
AACTACCCAAACAACCCCACAAACATGAGTTCTTTTGCACCATCTGGAACTGGAGGTCAA
ATGGGTATTACCAGTGACGGTATTAATTGGGGAGGGCCTACTCCTGGCCATGGAATGGGC
AACATTTCAAGCCTTGGGCTGGCTAACCTTGGCCGTGGAGCTGGAGACAGTTTTGGCTTG
CCTTCTGGCAGCTATGGAAGGAGCAATGCAACTGGTACCATTGGTGAACCCTTCTCTGCA
CCACCCAATGCATATGAAGTGAACAATGCAGATACATATGGCAGCAGCTCCATTTATGGA
GACTCAACTTGGAGGTTCACGTCATCTGAGATTGATATGCCTCCTTTTGGTAATGACCTT
GGAAATGTTGATCCAGATATCAAATCAAACATACCAGCAAGTTACATGGGCAACTATACT
GTTAATAATAATCAGACAAGCAGAGGTATCACTTCCTAG

Peptide Sequence

PEP ID

Os07t0584500-02
PEP Infomation

pep chromosome:IRGSP-1.0:7:23704931:23708852:1 gene:Os07g0584500 transcript:Os07t0584500-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0584500-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0584500-02)
Sequence

MEADSGKLFVGGISWETDEDRLREYFSRFGEVTEAVIMRDRNTGRARGFGFVVFTDAGVA
ERVTMDKHMIDGRMVEAKKAVPRDDQSITSKNNGSSIGSPGPGRTRKIFVGGLASNVTEV
EFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVEVKR
AVPKEQSPGPAARSPAGGQNYAMSRVHSFLNGFNQGYNPNPIGGYGMRVDGRYGLLTGAR
NGFSSFGPGYGMGMNSESGMNANFGANSSFVNNSNGRQIGSFYNGSSNRLGSPIGYVGLN
DDSGSLLSSMSRNVWGNENLNYPNNPTNMSSFAPSGTGGQMGITSDGINWGGPTPGHGMG
NISSLGLANLGRGAGDSFGLPSGSYGRSNATGTIGEPFSAPPNAYEVNNADTYGSSSIYG
DSTWRFTSSEIDMPPFGNDLGNVDPDIKSNIPASYMGNYTVNNNQTSRGITS

Transcript Sequence

Transcript ID

Os07t0584500-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:23704931:23708852:1 gene:Os07g0584500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0584500-01);Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0584500-02)
Sequence

AATTGGGCTTGCGTTTGTGGATTGCAGGGGGAGGAGGGGAGGGGAGGACGCGATGGAGGC
GGACTCCGGGAAGCTCTTCGTCGGCGGCATCTCGTGGGAGACGGACGAGGACCGCCTCCG
CGAGTACTTCAGCCGGTTCGGGGAGGTCACCGAGGCCGTCATCATGCGGGACCGCAACAC
CGGCCGCGCCCGTGGGTTCGGCTTCGTGGTCTTCACCGACGCAGGCGTCGCCGAGCGGGT
CACCATGGATAAGCACATGATCGACGGGCGCATGGTGGAAGCGAAGAAAGCTGTTCCCAG
GGACGACCAGAGCATCACCAGCAAGAACAATGGCAGCAGCATAGGGTCACCTGGACCAGG
CCGTACTAGAAAGATCTTTGTTGGAGGCTTGGCCTCTAATGTTACTGAGGTTGAATTTAG
AAGGTATTTTGAGCAATTTGGTGTGATTACGGATGTGGTTGTCATGTACGACCACAACAC
GCAGAGGCCTAGGGGCTTTGGATTCATCACCTATGACTCAGAAGATGCGGTGGACAAGGC
ACTGCACAAGAACTTCCATGAGCTGAATGGTAAGATGGTTGAGGTCAAGAGAGCTGTTCC
AAAGGAGCAATCACCTGGACCTGCTGCACGTTCACCTGCGGGAGGGCAGAACTATGCTAT
GAGCAGGGTCCATAGCTTCTTGAATGGTTTCAACCAGGGTTATAACCCAAACCCTATTGG
AGGTTATGGCATGAGGGTTGATGGAAGGTATGGTCTGCTTACAGGCGCACGGAATGGATT
CTCTTCATTTGGCCCTGGTTATGGAATGGGCATGAATTCTGAATCTGGGATGAATGCGAA
TTTTGGCGCCAATTCTAGTTTTGTCAATAACTCCAATGGGCGGCAGATAGGTTCATTCTA
CAATGGTAGTTCAAACAGATTAGGTAGTCCTATTGGTTATGTTGGTCTTAATGATGATTC
AGGATCACTATTGAGTTCAATGTCAAGGAATGTTTGGGGTAATGAAAATCTGAACTACCC
AAACAACCCCACAAACATGAGTTCTTTTGCACCATCTGGAACTGGAGGTCAAATGGGTAT
TACCAGTGACGGTATTAATTGGGGAGGGCCTACTCCTGGCCATGGAATGGGCAACATTTC
AAGCCTTGGGCTGGCTAACCTTGGCCGTGGAGCTGGAGACAGTTTTGGCTTGCCTTCTGG
CAGCTATGGAAGGAGCAATGCAACTGGTACCATTGGTGAACCCTTCTCTGCACCACCCAA
TGCATATGAAGTGAACAATGCAGATACATATGGCAGCAGCTCCATTTATGGAGACTCAAC
TTGGAGGTTCACGTCATCTGAGATTGATATGCCTCCTTTTGGTAATGACCTTGGAAATGT
TGATCCAGATATCAAATCAAACATACCAGCAAGTTACATGGGCAACTATACTGTTAATAA
TAATCAGACAAGCAGAGGTATCACTTCCTAGCGAGAGTACTATTATATTCATATATGACT
TGGGATAGATGAAAGAAGCATTATATCAGGTATTCAGGTGCATGACTATGAATTGGTGAT
ATCAGGTTAATATACGGGTTAGTTAATTGTTTCTAGCTAACCAGAGGTGTGGTTTATGGA
CACCACCATGCTAGAGGAGCGAATACAAACGTTTTGTGAAGGTTTCAGATTTTAGTTTAA
TTCCTACATGTATTAGGTCTTGGTTTTTGAATGAGATGTGCAGTGGTGATTGCGGCACAT
ACTTAGAGTGTTCCAACATAAGCTGGAATCCTGTCATATGGACAAACTTGTATACCAAAG
GAATGCTTTATTATCTTGCCCATTTATGGCTACATTAGCTCGCTTGTTTTCATTCCCTTT
TTAACCAATTCCATTTGTATACTAGAGATCTGCTTGACTTACTAGTGAAACTATTCGGGG
ACGCCGATCCTATCTTTGCAGTTGGCTCCCAGAAATAAAGCCACCAAAAGTGC