Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0580700-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:23491677:23495033:-1 gene:Os07g0580700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Integrin alpha chain, C-terminal cytoplasmic region, conserved site domain containing protein. (Os07t0580700-01)
Sequence	ATGGGCACAAATTTGCTGTTTCTTCCAGAGTTCTTGCTGTATACGTGCATGATGGCATCA TCATGTTTTGCTTACCAGTTCAACCCAAGCGAGGAAGCAGAGCACAGCTATCTTCGCTTT GCCGATGTCAAGCGGCAATGCCGGTCCGTGCTCACCTCGGCGTCCGAGCTCGCCGATAAC GCGTACCGGGTCAAACGCGTGAAGCGTGAGCTATCCTTCGAGAAGGGCGACTGGCGCCAG GACGCCGGCACGGATCCGCTGGTGCCATTCGACGGCGGCGACGCGGCGGAGGATGGCCGC CGGCCGCCGCTGGACCCGCTCCGTCTCGCCACGTTCGTGGTCACGCATGTCGACGACGAT GACGAGCGCCGTGCGCGCAATGCTGTCAACGTCAGTGGCCTCCTCGTCCTCACGATCTCC CGGACGAGCGCTTCACCGGAGATCGGGTACCACGTGCCGGTCGTGTCCTCGCCGGTGTTC GAGCTTTTGCCCGGCAGCACCAAGCTCAGGATTGTGTTTGAAGGCGTGTACACGGAGGCA GCGAGGTCCGGCAATGGCGGCGGCGAGAGGGTGTTGTGCATGGTCGGGGCCGGCGTTCTC CCAACGCGCGGCGCCGACGGTGCCGATCCGTGGGGCTGGGCCAAGAACTCCGGCCGTGCT GGCTTCCAGCCGCCGGTCGCCACCGACGAGAGCATGCTGCTCGTGCTACGTTACCCGAAG GAGCTTACACTGACGACCCGAGCGGTGGTCGGCGAGATGAGGAGCACGCGCGCCATGTCG GACGCCGCCTACTTCGACACGGTGAAGCTCGTGTCCGGGCCCACCTGGAACCGCCAGTAC GAGTTCCGGCGCCCCGAGGAGCTTGCTGCGGCCGCCGGGACGTGCAGGCCGCTCACCTCG AGCGACGACGGCGGCAACCGCGCGAGGGATCTGTACAAGGGCAGGCATCTGTGCGACGTC CTGGAACGCTACATCCATGGCGTGATCACCGCGCGCCCAACCTGGCGCCACTGCAACTCG ACGGCGACGGGCGCGCCGTGCCCGTTCGAGATGGACCGCGCAGAGGACGCCGCCATCGTC GGCATCGTACTGCACGACCTCCGGTGCCTGGGGTACGACCTCGACATGGCCGGCAACCCC GGGGGCGTGAAGGTGTCCGTCGTGTTCCGCGCCCTGTCTCCACGGGAGCACTGGTACACG GCGGTGCAGCGCACGGCGCTGAGCGGGGCGACGCTGTCGGCCGAGGGCGTGTGGAACGCG TCGGCAGGGGAGGTGTCCATGGTGGCATGCCGCGGCATCGGCGGCAAGGCGTGCCACTTC CGGGTGTGCCTGTCCTTCCCGGCGACGTTCTCCATCACCGGCCGCGACATGATGCTCGGA GAGATAACCACCGTCGACGTCAACGAAACCGGCGGCGGCGCACGCTCCTCGCTGTCGTTC CGGCAGCGCATGCCTCCGCCACGGCTGCAGAGATGCGTCTCCGGTATACTGCCAGTGGTA TACAGGTACAACTACACGAAGGTCAAGCTCGCCGGCGAGTTTCTCCGGAGGAACTCGTCG CCGTCCGACTTGAGGGAGATCATTGCGAGGTCTCTACCCTTGAGCTATCCAAACTGCGGC GGCAATGGCGATGGCAAGAGAAGCCTGGCCGACCTCGCCGACAGGCTCACGCTCCGGTTT ACGGCGATGCCAAGCTTGTTCTCCCCTCCTGGATGGATGGAGCGGCCGGTCCTTCACCTC GAGGTCTTCTTCCTCGGCCAGCTGATCGAACGATTCATGCCAGCATCCGACGATGCCACC ACGAGATCAAGCGCAATACCCGGCGATGAGCCCTGCTTGCAAGAGCAGCGGCTACTGAAC GTGTCGGCGGAGCTCACCATCTTCGGCGACCTTCGTGTTGCGAGCTCTGCGATGTCGCTG GAGGGCGTGTACGATCGAGAGGATGGCCGGATGTACCTGATAGGCTGCCGGGATGTCCAT CATCTCCCATGGCGAAGCTCGTCGGCGAGAAGGGAACTCGAGCTCGAAGAAGGAATGGAC TGTTCGATCGAGGTGAAAGTGGAGTACCCGCCGCCGACGACGCACTGGTTCGTCAGGTCG ACGGCGAGGGTTCAGATCGCGAGCACAAGGGTCGCCGGCGACGACCCGCTGCACTTCGAT ACGGTGAAGCTCAGGGCCCAGCCGGTCCGATATCCGCGGCGGTGGCCGGACTTCGTCTCC AGAGCAATCGTCGACAGTGTCCTTTGTGTCGTGTTGCTGACGGCCACCATCGCCGCCGCG CTCTGTCAGCTGCACCACCTCAAGCACCACGCCGACGTCGCGCCGTACGTCTCCCTCGTC ATGCTCGGCGTCCAAGCTCTCGGGCTCGTCATGCCGCTCTTCGCCGGCATGGAGGCGCTA CTGGCACGGGTCACCGTGCAGCCGGAGCTTGACACCACCAGGCCGCTGCCTCCCCCGGGT TCCTCCTACATGCTCGATTACAACCCGCCGTACCAGGCCGTCGACCGGACGGCGAAGATC CTCGCCGTCGCCGAGTTCTTGCTCACCCTGTGCATCGCGTGGAAGGTGCGGCGGTCGAGG GCGCGCCTGCTGGCCCGCTCGCCGGGCGAGGCGGCGCGCGTGCCGAGCGACGGCAAGGTG TTCGTCTACTGCTCCAGCGCGCACCTGGCCCTGTTCGTGGTCGTCCTCGCGCTGAACAGC AGCCGCGACGCCACCGTCGAGCAGCACGTTGGGCTGATGCAGGACATGTTCCTCCTCCCG CAGGTGATCGGCAACGCCGCGTGGAGCGTCAACTGCAAGCCCCTCGCGGGGAGCTTCTAC GTCGGCATCACCGCCGCGCGCCTGCTCCCGCGCGTGTACGACCTCGTGCGCCCCACGCCG GTGGCGGACGTGTTCTCCGACGACGTCCACGCGTCAGCGACAGCGAGCGCCATCAGCCGG GAGGGCTTCTTCCCCAGGGCCGGCGACGTGGTGATGCCGCTCGCCGCCGTCTCGCTCGCT GGCGCGGTGTTCGTCCAGCAGCGGTGGAACTACGCCATTGTCAGTAGGATGGGCAACTCA TCACAACAGCAGAAGTTGCATCACATCTTCTAA

Peptide Sequence

PEP ID	Os07t0580700-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:23491677:23495033:-1 gene:Os07g0580700 transcript:Os07t0580700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Integrin alpha chain, C-terminal cytoplasmic region, conserved site domain containing protein. (Os07t0580700-01)
Sequence	MGTNLLFLPEFLLYTCMMASSCFAYQFNPSEEAEHSYLRFADVKRQCRSVLTSASELADN AYRVKRVKRELSFEKGDWRQDAGTDPLVPFDGGDAAEDGRRPPLDPLRLATFVVTHVDDD DERRARNAVNVSGLLVLTISRTSASPEIGYHVPVVSSPVFELLPGSTKLRIVFEGVYTEA ARSGNGGGERVLCMVGAGVLPTRGADGADPWGWAKNSGRAGFQPPVATDESMLLVLRYPK ELTLTTRAVVGEMRSTRAMSDAAYFDTVKLVSGPTWNRQYEFRRPEELAAAAGTCRPLTS SDDGGNRARDLYKGRHLCDVLERYIHGVITARPTWRHCNSTATGAPCPFEMDRAEDAAIV GIVLHDLRCLGYDLDMAGNPGGVKVSVVFRALSPREHWYTAVQRTALSGATLSAEGVWNA SAGEVSMVACRGIGGKACHFRVCLSFPATFSITGRDMMLGEITTVDVNETGGGARSSLSF RQRMPPPRLQRCVSGILPVVYRYNYTKVKLAGEFLRRNSSPSDLREIIARSLPLSYPNCG GNGDGKRSLADLADRLTLRFTAMPSLFSPPGWMERPVLHLEVFFLGQLIERFMPASDDAT TRSSAIPGDEPCLQEQRLLNVSAELTIFGDLRVASSAMSLEGVYDREDGRMYLIGCRDVH HLPWRSSSARRELELEEGMDCSIEVKVEYPPPTTHWFVRSTARVQIASTRVAGDDPLHFD TVKLRAQPVRYPRRWPDFVSRAIVDSVLCVVLLTATIAAALCQLHHLKHHADVAPYVSLV MLGVQALGLVMPLFAGMEALLARVTVQPELDTTRPLPPPGSSYMLDYNPPYQAVDRTAKI LAVAEFLLTLCIAWKVRRSRARLLARSPGEAARVPSDGKVFVYCSSAHLALFVVVLALNS SRDATVEQHVGLMQDMFLLPQVIGNAAWSVNCKPLAGSFYVGITAARLLPRVYDLVRPTP VADVFSDDVHASATASAISREGFFPRAGDVVMPLAAVSLAGAVFVQQRWNYAIVSRMGNS SQQQKLHHIF

Transcript Sequence

Transcript ID	Os07t0580700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:23491677:23495033:-1 gene:Os07g0580700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Integrin alpha chain, C-terminal cytoplasmic region, conserved site domain containing protein. (Os07t0580700-01)
Sequence	TAAGACAGCTTCAATCTTTCTTGGTGAAAGATTTGGAGCAGATTATGTCAATGTTCATTT GTAAGGTGTCCAATTATCCATTGTTATTTTCATCTCTCATAAACCCCAAAAAAAAACATC TTGCTGTTGCAGCAACAAGATCTCCGGAGCCGTCGATATGGGCACAAATTTGCTGTTTCT TCCAGAGTTCTTGCTGTATACGTGCATGATGGCATCATCATGTTTTGCTTACCAGTTCAA CCCAAGCGAGGAAGCAGAGCACAGCTATCTTCGCTTTGCCGATGTCAAGCGGCAATGCCG GTCCGTGCTCACCTCGGCGTCCGAGCTCGCCGATAACGCGTACCGGGTCAAACGCGTGAA GCGTGAGCTATCCTTCGAGAAGGGCGACTGGCGCCAGGACGCCGGCACGGATCCGCTGGT GCCATTCGACGGCGGCGACGCGGCGGAGGATGGCCGCCGGCCGCCGCTGGACCCGCTCCG TCTCGCCACGTTCGTGGTCACGCATGTCGACGACGATGACGAGCGCCGTGCGCGCAATGC TGTCAACGTCAGTGGCCTCCTCGTCCTCACGATCTCCCGGACGAGCGCTTCACCGGAGAT CGGGTACCACGTGCCGGTCGTGTCCTCGCCGGTGTTCGAGCTTTTGCCCGGCAGCACCAA GCTCAGGATTGTGTTTGAAGGCGTGTACACGGAGGCAGCGAGGTCCGGCAATGGCGGCGG CGAGAGGGTGTTGTGCATGGTCGGGGCCGGCGTTCTCCCAACGCGCGGCGCCGACGGTGC CGATCCGTGGGGCTGGGCCAAGAACTCCGGCCGTGCTGGCTTCCAGCCGCCGGTCGCCAC CGACGAGAGCATGCTGCTCGTGCTACGTTACCCGAAGGAGCTTACACTGACGACCCGAGC GGTGGTCGGCGAGATGAGGAGCACGCGCGCCATGTCGGACGCCGCCTACTTCGACACGGT GAAGCTCGTGTCCGGGCCCACCTGGAACCGCCAGTACGAGTTCCGGCGCCCCGAGGAGCT TGCTGCGGCCGCCGGGACGTGCAGGCCGCTCACCTCGAGCGACGACGGCGGCAACCGCGC GAGGGATCTGTACAAGGGCAGGCATCTGTGCGACGTCCTGGAACGCTACATCCATGGCGT GATCACCGCGCGCCCAACCTGGCGCCACTGCAACTCGACGGCGACGGGCGCGCCGTGCCC GTTCGAGATGGACCGCGCAGAGGACGCCGCCATCGTCGGCATCGTACTGCACGACCTCCG GTGCCTGGGGTACGACCTCGACATGGCCGGCAACCCCGGGGGCGTGAAGGTGTCCGTCGT GTTCCGCGCCCTGTCTCCACGGGAGCACTGGTACACGGCGGTGCAGCGCACGGCGCTGAG CGGGGCGACGCTGTCGGCCGAGGGCGTGTGGAACGCGTCGGCAGGGGAGGTGTCCATGGT GGCATGCCGCGGCATCGGCGGCAAGGCGTGCCACTTCCGGGTGTGCCTGTCCTTCCCGGC GACGTTCTCCATCACCGGCCGCGACATGATGCTCGGAGAGATAACCACCGTCGACGTCAA CGAAACCGGCGGCGGCGCACGCTCCTCGCTGTCGTTCCGGCAGCGCATGCCTCCGCCACG GCTGCAGAGATGCGTCTCCGGTATACTGCCAGTGGTATACAGGTACAACTACACGAAGGT CAAGCTCGCCGGCGAGTTTCTCCGGAGGAACTCGTCGCCGTCCGACTTGAGGGAGATCAT TGCGAGGTCTCTACCCTTGAGCTATCCAAACTGCGGCGGCAATGGCGATGGCAAGAGAAG CCTGGCCGACCTCGCCGACAGGCTCACGCTCCGGTTTACGGCGATGCCAAGCTTGTTCTC CCCTCCTGGATGGATGGAGCGGCCGGTCCTTCACCTCGAGGTCTTCTTCCTCGGCCAGCT GATCGAACGATTCATGCCAGCATCCGACGATGCCACCACGAGATCAAGCGCAATACCCGG CGATGAGCCCTGCTTGCAAGAGCAGCGGCTACTGAACGTGTCGGCGGAGCTCACCATCTT CGGCGACCTTCGTGTTGCGAGCTCTGCGATGTCGCTGGAGGGCGTGTACGATCGAGAGGA TGGCCGGATGTACCTGATAGGCTGCCGGGATGTCCATCATCTCCCATGGCGAAGCTCGTC GGCGAGAAGGGAACTCGAGCTCGAAGAAGGAATGGACTGTTCGATCGAGGTGAAAGTGGA GTACCCGCCGCCGACGACGCACTGGTTCGTCAGGTCGACGGCGAGGGTTCAGATCGCGAG CACAAGGGTCGCCGGCGACGACCCGCTGCACTTCGATACGGTGAAGCTCAGGGCCCAGCC GGTCCGATATCCGCGGCGGTGGCCGGACTTCGTCTCCAGAGCAATCGTCGACAGTGTCCT TTGTGTCGTGTTGCTGACGGCCACCATCGCCGCCGCGCTCTGTCAGCTGCACCACCTCAA GCACCACGCCGACGTCGCGCCGTACGTCTCCCTCGTCATGCTCGGCGTCCAAGCTCTCGG GCTCGTCATGCCGCTCTTCGCCGGCATGGAGGCGCTACTGGCACGGGTCACCGTGCAGCC GGAGCTTGACACCACCAGGCCGCTGCCTCCCCCGGGTTCCTCCTACATGCTCGATTACAA CCCGCCGTACCAGGCCGTCGACCGGACGGCGAAGATCCTCGCCGTCGCCGAGTTCTTGCT CACCCTGTGCATCGCGTGGAAGGTGCGGCGGTCGAGGGCGCGCCTGCTGGCCCGCTCGCC GGGCGAGGCGGCGCGCGTGCCGAGCGACGGCAAGGTGTTCGTCTACTGCTCCAGCGCGCA CCTGGCCCTGTTCGTGGTCGTCCTCGCGCTGAACAGCAGCCGCGACGCCACCGTCGAGCA GCACGTTGGGCTGATGCAGGACATGTTCCTCCTCCCGCAGGTGATCGGCAACGCCGCGTG GAGCGTCAACTGCAAGCCCCTCGCGGGGAGCTTCTACGTCGGCATCACCGCCGCGCGCCT GCTCCCGCGCGTGTACGACCTCGTGCGCCCCACGCCGGTGGCGGACGTGTTCTCCGACGA CGTCCACGCGTCAGCGACAGCGAGCGCCATCAGCCGGGAGGGCTTCTTCCCCAGGGCCGG CGACGTGGTGATGCCGCTCGCCGCCGTCTCGCTCGCTGGCGCGGTGTTCGTCCAGCAGCG GTGGAACTACGCCATTGTCAGTAGGATGGGCAACTCATCACAACAGCAGAAGTTGCATCA CATCTTCTAATGCACAGGAGACATCACTTCTTGGGCTATATATGAGCCTTAATGGGCCCA AAATTACTGATGGGCCGTAATGAGCCGAATAATACTGATGGGCCAACAGATTACAGT