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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0576000-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:23302454:23309676:1 gene:Os07g0576000 gene_biotype:protein_coding transcript_biotype:protein_coding description:UbiA prenyltransferase family protein. (Os07t0576000-01);Homogentisic acid geranylgeranyl transferase. (Os07t0576000-02);Non-protein coding transcript. (Os07t0576000-03)
Sequence

ATGGCTTCCCTCGCCTCCCCTCCTCTCCCCTGCCGCGCCGCCGCCACCGCCAGCCGCAGC
GGGCGTCCTGCTCCGCGCCTCCTCGGCCCTCCGCCGCCGCCCGCTTCCCCTCTCCTCTCC
TCCGCTTCGGCGCGCTTCCCGCGTGCCCCCTGCAACGCCGCACGCTGGAGCCGGCGCGAC
GCCGTGCGGGTTTGCTCTCAAGCTGGTGCAGCTGGACCAGCCCCATTATCGAAGACATTG
TCAGACCTCAAGGATTCCTGCTGGAGATTTTTACGGCCACATACAATTCGAGGAACTGCC
TTGGGATCCATAGCATTAGTTGCTAGAGCTTTGATAGAGAACCCCCAACTGATAAATTGG
TGGTTGGTATTCAAAGCGTTCTATGGGCTCGTGGCGTTAATCTGTGGCAATGGTTACATC
GTTGGGATCAATCAGATCTATGACATTAGAATCGATAAGGTAAACAAGCCATATTTACCA
ATTGCTGCCGGTGATCTCTCAGTTCAGACAGCATGGTTATTGGTGGTATTATTTGCAGCT
GCGGGATTTTCAATTGTTGTGACAAACTTTGGACCTTTCATTACCTCTCTATATTGCCTT
GGTCTATTTCTTGGCACCATATACTCTGTTCCTCCATTCAGACTTAAGAGATATCCTGTT
GCTGCTTTTCTTATCATTGCAACGGTCCGTGGTTTTCTTCTCAACTTTGGTGTGTACTAT
GCTACTAGAGCAGCACTGGGTCTTACATTCCAATGGAGCTCGCCTGTTGCTTTCATTACA
TGCTTCGTGACTTTATTTGCTTTGGTCATTGCTATAACCAAAGATCTCCCAGATGTTGAA
GGGGATCGGAAGTATCAAATATCAACTTTGGCGACAAAGCTCGGTGTCAGAAACATTGCA
TTTCTTGGCTCTGGTTTATTGATAGCAAATTATGTTGCTGCTATTGCTGTAGCTTTTCTC
ATGCCTCAGGCTTTCAGGCGCACTGTAATGGTGCCTGTGCATGCTGCCCTTGCCGTTGGT
ATAATTTTCCAGACATGGGTTCTGGAGCAAGCAAAATATACTAAGGATGCTATTTCACAG
TACTACCGGTTCATTTGGAATCTCTTCTATGCTGAATACATCTTCTTCCCGTTGATATAG

Peptide Sequence

PEP ID

Os07t0576000-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:23302454:23309676:1 gene:Os07g0576000 transcript:Os07t0576000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:UbiA prenyltransferase family protein. (Os07t0576000-01);Homogentisic acid geranylgeranyl transferase. (Os07t0576000-02);Non-protein coding transcript. (Os07t0576000-03)
Sequence

MASLASPPLPCRAAATASRSGRPAPRLLGPPPPPASPLLSSASARFPRAPCNAARWSRRD
AVRVCSQAGAAGPAPLSKTLSDLKDSCWRFLRPHTIRGTALGSIALVARALIENPQLINW
WLVFKAFYGLVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAA
AGFSIVVTNFGPFITSLYCLGLFLGTIYSVPPFRLKRYPVAAFLIIATVRGFLLNFGVYY
ATRAALGLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIA
FLGSGLLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAISQ
YYRFIWNLFYAEYIFFPLI

Transcript Sequence

Transcript ID

Os07t0576000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:23302454:23309676:1 gene:Os07g0576000 gene_biotype:protein_coding transcript_biotype:protein_coding description:UbiA prenyltransferase family protein. (Os07t0576000-01);Homogentisic acid geranylgeranyl transferase. (Os07t0576000-02);Non-protein coding transcript. (Os07t0576000-03)
Sequence

AGCCATAGGATAACAAACGCACGGTTCTCATCTTCCATCGTCACTCACCGACACCATCCG
TAGGTCTTCCAGGAGCTCCTTCCTGCCACGTCATCAATGGCGATGATGGGTGGCTGACAG
TCAAACGCACCCCACGCCTCCTCCCCTTCCCCCCTCTCTCCCTCCATGGCTTCCCTCGCC
TCCCCTCCTCTCCCCTGCCGCGCCGCCGCCACCGCCAGCCGCAGCGGGCGTCCTGCTCCG
CGCCTCCTCGGCCCTCCGCCGCCGCCCGCTTCCCCTCTCCTCTCCTCCGCTTCGGCGCGC
TTCCCGCGTGCCCCCTGCAACGCCGCACGCTGGAGCCGGCGCGACGCCGTGCGGGTTTGC
TCTCAAGCTGGTGCAGCTGGACCAGCCCCATTATCGAAGACATTGTCAGACCTCAAGGAT
TCCTGCTGGAGATTTTTACGGCCACATACAATTCGAGGAACTGCCTTGGGATCCATAGCA
TTAGTTGCTAGAGCTTTGATAGAGAACCCCCAACTGATAAATTGGTGGTTGGTATTCAAA
GCGTTCTATGGGCTCGTGGCGTTAATCTGTGGCAATGGTTACATCGTTGGGATCAATCAG
ATCTATGACATTAGAATCGATAAGGTAAACAAGCCATATTTACCAATTGCTGCCGGTGAT
CTCTCAGTTCAGACAGCATGGTTATTGGTGGTATTATTTGCAGCTGCGGGATTTTCAATT
GTTGTGACAAACTTTGGACCTTTCATTACCTCTCTATATTGCCTTGGTCTATTTCTTGGC
ACCATATACTCTGTTCCTCCATTCAGACTTAAGAGATATCCTGTTGCTGCTTTTCTTATC
ATTGCAACGGTCCGTGGTTTTCTTCTCAACTTTGGTGTGTACTATGCTACTAGAGCAGCA
CTGGGTCTTACATTCCAATGGAGCTCGCCTGTTGCTTTCATTACATGCTTCGTGACTTTA
TTTGCTTTGGTCATTGCTATAACCAAAGATCTCCCAGATGTTGAAGGGGATCGGAAGTAT
CAAATATCAACTTTGGCGACAAAGCTCGGTGTCAGAAACATTGCATTTCTTGGCTCTGGT
TTATTGATAGCAAATTATGTTGCTGCTATTGCTGTAGCTTTTCTCATGCCTCAGGCTTTC
AGGCGCACTGTAATGGTGCCTGTGCATGCTGCCCTTGCCGTTGGTATAATTTTCCAGACA
TGGGTTCTGGAGCAAGCAAAATATACTAAGGATGCTATTTCACAGTACTACCGGTTCATT
TGGAATCTCTTCTATGCTGAATACATCTTCTTCCCGTTGATATAGAGACCAAGCAATCTG
ATATGGTCTGCATGTTGAGTGCGGCAAAAACTAGAAGCCCATATGAACAGTGGGAGTAAG
GGAACGAACATGCCATCCATGGGAAGACTCTGATAACTCTCTCTCGCCCGGGCTGTAAAG
GGTAAGCACTGTTGTGCATATATATGAAAGGAAGGTGATAAAGCAGGGATGCTAAATTGC
TACTGGGATCCTTAAAGGCTTATAGTGGTCACCAGTGGAATGTGCCTTAATAATTTGGTT
ACCTAGCAGAGCAAGTTTTTGCAGGTTATTAGGTAATATCTTTGAGGGAATGAACTTAGA
TTTCATTGTTTTAAGGTCTGGTCACACAACGGGTAGTAGTTCTGGAGCGGCAAAAGACGA
CCTTGTTTTACACTACCAAGGGAGGTTAACTCTAGTTTTCATGTGACCACTTACCTTGAG
AGTTGAGACCATGGAATCACTTGTCGACTCCTCGGCTTGTATATTTCTAGTGTCAGCATT
TGCATTCTCCTCCACACTTGTACTTGAAGAGTTGAAGACAACTTTTTTGTTTGTGT