Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0575100-00
CDS Infomation

cds chromosome:IRGSP-1.0:7:23256517:23265421:-1 gene:Os07g0575100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os07t0575100-00)
Sequence

ATGGCGTCCGGGGATGACCAGGCGGCCGCCGCGGCGCTCCTGGGAGGGGACCCGGCGGCG
TTCGACGCGCTGCTCTCGACGCTGATGTCCTCGTCGAACGCCGACCGCGCCGCCGCCGAG
GCGGCGTTCCACCGCCTCCGGGGGTCCCACCCGGAGCCGCTCGCGCTCCGCCTCGCCTCG
TCGCTGTCGTCGCCCGCCACGCCCGCCGACCTCCGCGCCATGGCCGCCGTCCTCCTCCGC
AAGCTCCTCTCCCCGACGCCCTCCTCCGACGCGTCCAGCGCCGCCGCGGCGCCGGTGTGG
CCCCACCTCTCCCCCGCGGGGCAGGCCGCGCTCAAGCAGCACCTCCTCTCGGCGCTCCAG
TCCGACCCGCCCAAGCCCATCGCGAAGAAGGTATGCGACGCCATATCCGAGCTCGCCGCG
CTCCTCCTGCCGGAGAACGCGTGGGCCGAGCTGCTCCCCTTCCTGTTCCGCGCGGCGTCG
GGACCCGAGGCTCCCAATCTGCAGGAGTCCGCGCTTCTCATCTTCGCGCGCCTGGCGGAT
TACATCGCTGAATCGCTTCTAGACCATCTGATGACAATCCACAACCTGCTCGCCTCCGCC
CTGGCGCACCCGACATCTCCTGATGTGCGCATCGCCGCGTTGAGCGCTGCGGTTAACCTC
GTCCAGTGCTTGCCCACCAACGCTGACCGGGATAAGATGCAGGATTTGCTTCCTGCAATG
ATGAGGGCGCTCACGGATTGCCTAAACTCTGGTCAGGAGGCCTCTGCACAGGAGGCGCTG
GAGCTGCTTGTGGAACTGGCTGGTGCAGAGCCAAGGTTCCTGCGGCGGCAGATTGCAGAT
GTTGTAGGTGCAATGCTGCAGATAGCTGAGGCTGCACAGCTGGAGGATGGGACTAGGCAC
CTCGCTGTAGAGTTTGTGATTACTCTCGCTGAGGCCAGGGAGCGTGCACCAGGAATGATG
CGTCGCCTCCCGCAGTTTGTTGGCAGGTTATTTGCAGTGCTCATGCAGATGTTGCTTGAT
GTCGAGGATGATCCTGCTTGGCACACTGCAGAGACAGAGGATGAAGATGCGGGTGAAGGA
AATAACTATGGAGTAGCACAGGAGTGCCTTGACCGTCTAGCCATTGCTATTGGTGGGAAT
GCAATTGTGCCAATTGCATCTGAGCTGCTCCCGCAGTACCTTTCCGCTCCTGAGTGGCAG
AAGCACCATGCTGCACTAATCACACTTGCACAGATTGCAGAAGGATGTGCGAAGGTGATG
CTTAAAAATCTGGAGCAGGTTGTTTCGATGATTTTGAATGGATTTCAACATCCTCATGCA
CGTGTGCGTTGGGCTGCAATCAATGCAATTGGTCAGCTATCTACTGATTTGGGTCCAGAC
TTGCAAGTTAATTATCACCAGCAGGTGCTGCCTGCATTGGCAAACGCCATGGATGATTTT
CAGAATCCACGGGTGCAAGCACATGCTGCATCAGCTATCTTGAATTTCAGTGAGAATTGC
ACGCCTGAAATTCTGACACCTTACCTGGATGGAATTGTTACCAAATTACTTGTTCTTCTT
CAGAACGGCAAGCAAATGGTGCAAGAGGGAGCATTGACAGCTTTAGCATCAGTAGCTGAT
TCATCGCAGGAGCACTTCAAAAAATACTATGATGCAGTGATGCCATACCTGAAAGCTATT
TTAATGAATGCAACTGATAAGTCCAATAGGATGCTTCGTGCCAAGTCTATGGAGTGTATA
AGTCTGGTCGGAATGGCTGTAGGCAAGGATAAGTTCAGGGATGACGCAAAGCAGGTCATG
GAAGTACTTATGAGTTTGCAAGGAACTACAATGGAAAATGATGATCCAATAACAAGCTAC
ATGCTTCAGGCTTGGGCCAGGTTATGCAAATGTCTCGGGCAGGATTTTCTTCCGTACATG
AACGTTGTTATGCCACCACTGCTTCAGTCTGCTCAACTGAAGCCTGATGTCACAATTACT
TCAGCTGAATCTGATGATGATATAGAATCAGATGATGATAGCATTGAAACAATTACGCTT
GGCGACAAAAGAATAGGTATCCGAACTAGTGTACTAGAAGAGAAAGCAACAGCTTGCAAC
ATGCTATGCTGTTATGCTGATGAACTCAAGGAGGGGTTCTTCCCATGGATTGATCAGGTT
GCTCCTACATTGGTTCCACTCCTTAAATTTTACTTTCATGAGGAAGTGAGGAGAGCTGCT
GTTGCAGCTATGCCTGAACTACTACGTTCTGCAAAATTGGCTGTTGAGAAGGGGCTGGCT
CAAGGACGCGATGAATCTTATGTTAAACAATTATCTGACTACATAATTCCAGCTCTTGTT
GAAGCGCTGCACAAGGAACCAGAAACTGAGATGTGTTCATCCATGCTTGATTCATTAAAT
GAGTGCATGCAGCTCTCTGGTCGACTCCTTGATGAAAACCAAGTAAGAGCTGTTTCGGAT
GAGATAAAAAATGTTATTATAGCCAGCGCTACCAGGAAAAGAGAAAGGTCAGAGAGATCA
AAGGCAGAAGATTTTGATGCTGATGAAGGAGAACTACTCAAAGAAGAGAATGAGCAGGAG
GAGGAAGTGTTTGATCAGGTTGGAGAGTGCCTTGGTACTTTAATTAAGACCTTCAAAGCT
TCTTTTCTGCCATTCTTTGATGAACTGTCTGTATACATCACACCTATGTTGGGAAAAGAT
AAGACTGCTGAAGAGAGAAGGATAGCTATCTGTATATTTGATGATATTGCAGAGCAATGT
CGTGAATCTGCTCTCAAGTATTATGATACATACCTACCTTTTCTGCTGGAGGCATCCAAT
GATGAGAACTCAGATGTTCGGCAGGCTGCTGTCTATGGTGTGGGTGTATGTGCTGAATTT
GGCGGTCATGTTTTCCGCCCACTTGTTGGAGAGGCGCTGTCAAAGTTGAACAATGTTATC
ACACATCCTGAAGCAAAGCATGCAGACAATATAATGGCATATGACAATGCTGTTTCAGCG
CTTGGTAAAATATGCCAATTCCATCGTGATGGTATCGATGCAGCTCAGGTCATTCCTGCC
TGGCTTGGTTGCTTGCCTATAAAAGATGACAAGATTGAAGCAAAAGTTGTACACGATCAG
CTCTCCTCAATGGTTGAAAGATCGGATGCAGATATTCTTGGTCCTCATAGCCAATATCTT
CCAAAAATTGTTTCAATTTTTGCGGAGGTTTTATGCAACGGAACAGAGCTTGCTACAGAT
GAAACAACCAAGCGGATGGTCAATCTCTTGAGGCGTTTCCAGCAGACATTGCCACCAGAT
TTTCTTGCCTCAACATTTTCCAGCTTGCAACCACAGCAGCAGCTTCTGCTGCAGTCCATT
TTGTCGACATAG

Peptide Sequence

PEP ID

Os07t0575100-00
PEP Infomation

pep chromosome:IRGSP-1.0:7:23256517:23265421:-1 gene:Os07g0575100 transcript:Os07t0575100-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os07t0575100-00)
Sequence

MASGDDQAAAAALLGGDPAAFDALLSTLMSSSNADRAAAEAAFHRLRGSHPEPLALRLAS
SLSSPATPADLRAMAAVLLRKLLSPTPSSDASSAAAAPVWPHLSPAGQAALKQHLLSALQ
SDPPKPIAKKVCDAISELAALLLPENAWAELLPFLFRAASGPEAPNLQESALLIFARLAD
YIAESLLDHLMTIHNLLASALAHPTSPDVRIAALSAAVNLVQCLPTNADRDKMQDLLPAM
MRALTDCLNSGQEASAQEALELLVELAGAEPRFLRRQIADVVGAMLQIAEAAQLEDGTRH
LAVEFVITLAEARERAPGMMRRLPQFVGRLFAVLMQMLLDVEDDPAWHTAETEDEDAGEG
NNYGVAQECLDRLAIAIGGNAIVPIASELLPQYLSAPEWQKHHAALITLAQIAEGCAKVM
LKNLEQVVSMILNGFQHPHARVRWAAINAIGQLSTDLGPDLQVNYHQQVLPALANAMDDF
QNPRVQAHAASAILNFSENCTPEILTPYLDGIVTKLLVLLQNGKQMVQEGALTALASVAD
SSQEHFKKYYDAVMPYLKAILMNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVM
EVLMSLQGTTMENDDPITSYMLQAWARLCKCLGQDFLPYMNVVMPPLLQSAQLKPDVTIT
SAESDDDIESDDDSIETITLGDKRIGIRTSVLEEKATACNMLCCYADELKEGFFPWIDQV
APTLVPLLKFYFHEEVRRAAVAAMPELLRSAKLAVEKGLAQGRDESYVKQLSDYIIPALV
EALHKEPETEMCSSMLDSLNECMQLSGRLLDENQVRAVSDEIKNVIIASATRKRERSERS
KAEDFDADEGELLKEENEQEEEVFDQVGECLGTLIKTFKASFLPFFDELSVYITPMLGKD
KTAEERRIAICIFDDIAEQCRESALKYYDTYLPFLLEASNDENSDVRQAAVYGVGVCAEF
GGHVFRPLVGEALSKLNNVITHPEAKHADNIMAYDNAVSALGKICQFHRDGIDAAQVIPA
WLGCLPIKDDKIEAKVVHDQLSSMVERSDADILGPHSQYLPKIVSIFAEVLCNGTELATD
ETTKRMVNLLRRFQQTLPPDFLASTFSSLQPQQQLLLQSILST

Transcript Sequence

Transcript ID

Os07t0575100-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:23256517:23265421:-1 gene:Os07g0575100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os07t0575100-00)
Sequence

TTTCCACCCCTCTCCCTCCCCCTCCCCCCACACACGACGCCGCCGCCGCCACGCGCGTCA
CGAAAACCCTAGCCGCCTCCCCCGCCGCCGCCAGAGAAGGGGGCGCGTATCCAATCCGAT
CCATCCGATGGCGTCCGGGGATGACCAGGCGGCCGCCGCGGCGCTCCTGGGAGGGGACCC
GGCGGCGTTCGACGCGCTGCTCTCGACGCTGATGTCCTCGTCGAACGCCGACCGCGCCGC
CGCCGAGGCGGCGTTCCACCGCCTCCGGGGGTCCCACCCGGAGCCGCTCGCGCTCCGCCT
CGCCTCGTCGCTGTCGTCGCCCGCCACGCCCGCCGACCTCCGCGCCATGGCCGCCGTCCT
CCTCCGCAAGCTCCTCTCCCCGACGCCCTCCTCCGACGCGTCCAGCGCCGCCGCGGCGCC
GGTGTGGCCCCACCTCTCCCCCGCGGGGCAGGCCGCGCTCAAGCAGCACCTCCTCTCGGC
GCTCCAGTCCGACCCGCCCAAGCCCATCGCGAAGAAGGTATGCGACGCCATATCCGAGCT
CGCCGCGCTCCTCCTGCCGGAGAACGCGTGGGCCGAGCTGCTCCCCTTCCTGTTCCGCGC
GGCGTCGGGACCCGAGGCTCCCAATCTGCAGGAGTCCGCGCTTCTCATCTTCGCGCGCCT
GGCGGATTACATCGCTGAATCGCTTCTAGACCATCTGATGACAATCCACAACCTGCTCGC
CTCCGCCCTGGCGCACCCGACATCTCCTGATGTGCGCATCGCCGCGTTGAGCGCTGCGGT
TAACCTCGTCCAGTGCTTGCCCACCAACGCTGACCGGGATAAGATGCAGGATTTGCTTCC
TGCAATGATGAGGGCGCTCACGGATTGCCTAAACTCTGGTCAGGAGGCCTCTGCACAGGA
GGCGCTGGAGCTGCTTGTGGAACTGGCTGGTGCAGAGCCAAGGTTCCTGCGGCGGCAGAT
TGCAGATGTTGTAGGTGCAATGCTGCAGATAGCTGAGGCTGCACAGCTGGAGGATGGGAC
TAGGCACCTCGCTGTAGAGTTTGTGATTACTCTCGCTGAGGCCAGGGAGCGTGCACCAGG
AATGATGCGTCGCCTCCCGCAGTTTGTTGGCAGGTTATTTGCAGTGCTCATGCAGATGTT
GCTTGATGTCGAGGATGATCCTGCTTGGCACACTGCAGAGACAGAGGATGAAGATGCGGG
TGAAGGAAATAACTATGGAGTAGCACAGGAGTGCCTTGACCGTCTAGCCATTGCTATTGG
TGGGAATGCAATTGTGCCAATTGCATCTGAGCTGCTCCCGCAGTACCTTTCCGCTCCTGA
GTGGCAGAAGCACCATGCTGCACTAATCACACTTGCACAGATTGCAGAAGGATGTGCGAA
GGTGATGCTTAAAAATCTGGAGCAGGTTGTTTCGATGATTTTGAATGGATTTCAACATCC
TCATGCACGTGTGCGTTGGGCTGCAATCAATGCAATTGGTCAGCTATCTACTGATTTGGG
TCCAGACTTGCAAGTTAATTATCACCAGCAGGTGCTGCCTGCATTGGCAAACGCCATGGA
TGATTTTCAGAATCCACGGGTGCAAGCACATGCTGCATCAGCTATCTTGAATTTCAGTGA
GAATTGCACGCCTGAAATTCTGACACCTTACCTGGATGGAATTGTTACCAAATTACTTGT
TCTTCTTCAGAACGGCAAGCAAATGGTGCAAGAGGGAGCATTGACAGCTTTAGCATCAGT
AGCTGATTCATCGCAGGAGCACTTCAAAAAATACTATGATGCAGTGATGCCATACCTGAA
AGCTATTTTAATGAATGCAACTGATAAGTCCAATAGGATGCTTCGTGCCAAGTCTATGGA
GTGTATAAGTCTGGTCGGAATGGCTGTAGGCAAGGATAAGTTCAGGGATGACGCAAAGCA
GGTCATGGAAGTACTTATGAGTTTGCAAGGAACTACAATGGAAAATGATGATCCAATAAC
AAGCTACATGCTTCAGGCTTGGGCCAGGTTATGCAAATGTCTCGGGCAGGATTTTCTTCC
GTACATGAACGTTGTTATGCCACCACTGCTTCAGTCTGCTCAACTGAAGCCTGATGTCAC
AATTACTTCAGCTGAATCTGATGATGATATAGAATCAGATGATGATAGCATTGAAACAAT
TACGCTTGGCGACAAAAGAATAGGTATCCGAACTAGTGTACTAGAAGAGAAAGCAACAGC
TTGCAACATGCTATGCTGTTATGCTGATGAACTCAAGGAGGGGTTCTTCCCATGGATTGA
TCAGGTTGCTCCTACATTGGTTCCACTCCTTAAATTTTACTTTCATGAGGAAGTGAGGAG
AGCTGCTGTTGCAGCTATGCCTGAACTACTACGTTCTGCAAAATTGGCTGTTGAGAAGGG
GCTGGCTCAAGGACGCGATGAATCTTATGTTAAACAATTATCTGACTACATAATTCCAGC
TCTTGTTGAAGCGCTGCACAAGGAACCAGAAACTGAGATGTGTTCATCCATGCTTGATTC
ATTAAATGAGTGCATGCAGCTCTCTGGTCGACTCCTTGATGAAAACCAAGTAAGAGCTGT
TTCGGATGAGATAAAAAATGTTATTATAGCCAGCGCTACCAGGAAAAGAGAAAGGTCAGA
GAGATCAAAGGCAGAAGATTTTGATGCTGATGAAGGAGAACTACTCAAAGAAGAGAATGA
GCAGGAGGAGGAAGTGTTTGATCAGGTTGGAGAGTGCCTTGGTACTTTAATTAAGACCTT
CAAAGCTTCTTTTCTGCCATTCTTTGATGAACTGTCTGTATACATCACACCTATGTTGGG
AAAAGATAAGACTGCTGAAGAGAGAAGGATAGCTATCTGTATATTTGATGATATTGCAGA
GCAATGTCGTGAATCTGCTCTCAAGTATTATGATACATACCTACCTTTTCTGCTGGAGGC
ATCCAATGATGAGAACTCAGATGTTCGGCAGGCTGCTGTCTATGGTGTGGGTGTATGTGC
TGAATTTGGCGGTCATGTTTTCCGCCCACTTGTTGGAGAGGCGCTGTCAAAGTTGAACAA
TGTTATCACACATCCTGAAGCAAAGCATGCAGACAATATAATGGCATATGACAATGCTGT
TTCAGCGCTTGGTAAAATATGCCAATTCCATCGTGATGGTATCGATGCAGCTCAGGTCAT
TCCTGCCTGGCTTGGTTGCTTGCCTATAAAAGATGACAAGATTGAAGCAAAAGTTGTACA
CGATCAGCTCTCCTCAATGGTTGAAAGATCGGATGCAGATATTCTTGGTCCTCATAGCCA
ATATCTTCCAAAAATTGTTTCAATTTTTGCGGAGGTTTTATGCAACGGAACAGAGCTTGC
TACAGATGAAACAACCAAGCGGATGGTCAATCTCTTGAGGCGTTTCCAGCAGACATTGCC
ACCAGATTTTCTTGCCTCAACATTTTCCAGCTTGCAACCACAGCAGCAGCTTCTGCTGCA
GTCCATTTTGTCGACATAGGTTTTTTTTTTTTGTTGCTGCAAGTTCAAATCTTGCTCCTT
TTTTGATATATTTCATCATTGTTACCGTCAACCAATTCTTTGTGTTGAATCATTTGTGGG
TGAGTTCATTTGTGAATGCGCATTGCTGGCTTCAAGGAATTGGAGGTTGCCATTTCATAT
GGTTTTGATGTAGAGTGTGTATATTATCTTGTACTCAGATATGGTTTTGGGATGTGCTGC
ATCAGAG