Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0571500-00
CDS Infomation

cds chromosome:IRGSP-1.0:7:23070015:23074573:-1 gene:Os07g0571500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transmembrane protein 49. (Os07t0571500-00)
Sequence

ATGGGACCCGCCGCCGCTGACGACGCCGCTGCCGGCGAGGACCAGGCTTTGTCCGACCTT
CGTGAAAAGCATCAATTTGACCTGGAGAGATTAACGCTAACATCGCAGCCACTCAGAACA
TTGGCGTTATTTGCATTAGCCATTGGACAGAGTATAAAAAGCACATGTTTATGTGTTCTG
AAAGATAGTGCTCGGTTGAAGTTCTTGGTTCTTTTGGTTGCTTCTGCCTGTACTCCGCTC
TTGTTAACTAACGGTCCACATGAAAAGCATGTTCAGGAGCTGCTTTGGTATATCAGATTT
GGATTATGGTGGGTCATACTAGGGGTGGCTTCATCCATTGGGTTAGGCTCTGGTTTGCAC
ACATTTGTATTGTATTTAGGGCCTCATATTGCCCTTTTTACAATCAAGGCAGTTCATTGC
GGTCGGACTGATTTAAAGAGTGCTCCTTATGATACTATTCTCCTTAAAATGAGACCTTCA
TGGTTGGAGAAAGACTGTCTAGAATTTGGACCGCCAATGTACCAGGAAACAATTCCATTT
AGCAAAATACTGCATGAAGTTCACCTTGAAGCTGTTCTCTGGGGCATTGGAACTGCACTT
GGAGAACTTCCTCCATATTTCCTCTCGAGAGCAGCTAGCATGTCAGGACGCAAACTAGAT
GAGCTGGAAGAGTTGGATGCTTCCGTTTCAGGAGAAGGTTTTCTATCCTCAACTCTGCAT
CGGGCTAAAAGATGGCTTATGTCTCACTCACAGTATCTTAACTTCCCTACCATCTTATTA
CTTGCTTCGGTGCCAAACCCCCTCTTCGATCTTGCTGGCATTTTGTGTGGGCAATTTAAC
ATCCCATTCTGGAAGTTCTTTCTAGCAACTTTAATTGGAAAGGCTGTTATTAAGGTTTAT
ATCCAGACAACATTAGTAATTACTCTCTGCAATAACCAACTTCTTGATTTGGTGGAGAAA
AGAATTATGTGGGTATTTGGCAATGTTCCTATGGTATCATCCGTCCTTCCCTCTTTAGTT
GCCAAGTTGAAGACAGCCAAGAGCAAGTTTTTATCATCCAGTGTTGCTGCATCAGCATCA
AGTGTTGTGAAGGAAACGAAGTGGAATCTATCATTCTCTTTGATCTGGAATACCGTGGTG
TGGCTTTTGATCATGAACTTCATCGTTCAGATAATTACTTCTACAGCACAAAGTTATCTC
AAGAGACAACAAGAGCTAGAGATCCGGAAGAAGTTGTCAGCGACGATACAAACTGTTTCT
GAAACTACTGGCTTATCAAATTAA

Peptide Sequence

PEP ID

Os07t0571500-00
PEP Infomation

pep chromosome:IRGSP-1.0:7:23070015:23074573:-1 gene:Os07g0571500 transcript:Os07t0571500-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transmembrane protein 49. (Os07t0571500-00)
Sequence

MGPAAADDAAAGEDQALSDLREKHQFDLERLTLTSQPLRTLALFALAIGQSIKSTCLCVL
KDSARLKFLVLLVASACTPLLLTNGPHEKHVQELLWYIRFGLWWVILGVASSIGLGSGLH
TFVLYLGPHIALFTIKAVHCGRTDLKSAPYDTILLKMRPSWLEKDCLEFGPPMYQETIPF
SKILHEVHLEAVLWGIGTALGELPPYFLSRAASMSGRKLDELEELDASVSGEGFLSSTLH
RAKRWLMSHSQYLNFPTILLLASVPNPLFDLAGILCGQFNIPFWKFFLATLIGKAVIKVY
IQTTLVITLCNNQLLDLVEKRIMWVFGNVPMVSSVLPSLVAKLKTAKSKFLSSSVAASAS
SVVKETKWNLSFSLIWNTVVWLLIMNFIVQIITSTAQSYLKRQQELEIRKKLSATIQTVS
ETTGLSN

Transcript Sequence

Transcript ID

Os07t0571500-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:23070015:23074573:-1 gene:Os07g0571500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transmembrane protein 49. (Os07t0571500-00)
Sequence

CTCTTTCTTCACCCTTGCGCTGCCGTTCCGCTCGCCCAAAAAGCACCCCAATCTTTCCGC
TCGGAGAAGCGTGGGGGCGCGCGTTTCTGCTCGCGCCTTCTTCTCGTTCTCATCATTTTT
CCAATTGGTGTATATAGCGGCGTACTCGGAGAGATCGGAGATCTGATCTAGTAGGCGGCA
GGGTGGGGGTCGACCCCGAGGGCTGCGAGATGGGACCCGCCGCCGCTGACGACGCCGCTG
CCGGCGAGGACCAGGCTTTGTCCGACCTTCGTGAAAAGCATCAATTTGACCTGGAGAGAT
TAACGCTAACATCGCAGCCACTCAGAACATTGGCGTTATTTGCATTAGCCATTGGACAGA
GTATAAAAAGCACATGTTTATGTGTTCTGAAAGATAGTGCTCGGTTGAAGTTCTTGGTTC
TTTTGGTTGCTTCTGCCTGTACTCCGCTCTTGTTAACTAACGGTCCACATGAAAAGCATG
TTCAGGAGCTGCTTTGGTATATCAGATTTGGATTATGGTGGGTCATACTAGGGGTGGCTT
CATCCATTGGGTTAGGCTCTGGTTTGCACACATTTGTATTGTATTTAGGGCCTCATATTG
CCCTTTTTACAATCAAGGCAGTTCATTGCGGTCGGACTGATTTAAAGAGTGCTCCTTATG
ATACTATTCTCCTTAAAATGAGACCTTCATGGTTGGAGAAAGACTGTCTAGAATTTGGAC
CGCCAATGTACCAGGAAACAATTCCATTTAGCAAAATACTGCATGAAGTTCACCTTGAAG
CTGTTCTCTGGGGCATTGGAACTGCACTTGGAGAACTTCCTCCATATTTCCTCTCGAGAG
CAGCTAGCATGTCAGGACGCAAACTAGATGAGCTGGAAGAGTTGGATGCTTCCGTTTCAG
GAGAAGGTTTTCTATCCTCAACTCTGCATCGGGCTAAAAGATGGCTTATGTCTCACTCAC
AGTATCTTAACTTCCCTACCATCTTATTACTTGCTTCGGTGCCAAACCCCCTCTTCGATC
TTGCTGGCATTTTGTGTGGGCAATTTAACATCCCATTCTGGAAGTTCTTTCTAGCAACTT
TAATTGGAAAGGCTGTTATTAAGGTTTATATCCAGACAACATTAGTAATTACTCTCTGCA
ATAACCAACTTCTTGATTTGGTGGAGAAAAGAATTATGTGGGTATTTGGCAATGTTCCTA
TGGTATCATCCGTCCTTCCCTCTTTAGTTGCCAAGTTGAAGACAGCCAAGAGCAAGTTTT
TATCATCCAGTGTTGCTGCATCAGCATCAAGTGTTGTGAAGGAAACGAAGTGGAATCTAT
CATTCTCTTTGATCTGGAATACCGTGGTGTGGCTTTTGATCATGAACTTCATCGTTCAGA
TAATTACTTCTACAGCACAAAGTTATCTCAAGAGACAACAAGAGCTAGAGATCCGGAAGA
AGTTGTCAGCGACGATACAAACTGTTTCTGAAACTACTGGCTTATCAAATTAATTCAGCC
AGATCATTCTTTCTAATATACAAATTTCACATTCATGCCATCAATTTCTTCCCACACCTG
AGGAGGATACAATTGACTTGGCAATTCCAAATATGGTTAATTTAGAAGTTACAACGAGCT
GGAAAACCGGTATTCTTC