Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0563300-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:22534900:22542783:1 gene:Os07g0563300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GERMINATION DEFECTIVE 1 description:B3 domain transcriptional repressor, Regulator of seed germination and seedling development (Os07t0563300-01)
Sequence	ATGTCGTCGCCGGCGCAGCCGCCCCCGACGCGGCCGCCGGTGGCCGCCCCGCCCCCATCC CTCGCGGCGGCGGCCCCCATCTCGGTGCAGCCGCCCCCGCTCCAGCCGAAACCGCCGCCG CATCCGCAGCAGCCGCCTCAGGCGGTCGTCTCGGTTGGGGTTGGGCCGCCGCCGCCGACG CCGCAGCATCAGCAGCAGCAGCAGGGCCCCCCCGGTCACGCGCCGCCGCAGCAGCGGCCC AGGATCTGCTTCAACGCGCACTGCAAGGACCCCAAATCCGACGGCCCGCGCCGCCGCGGA TGGCGACTCCGCAACGGCGACTTCGCCGAGCTCTGCGACCGATGCTATCACTCGTTCGAG CATGGGGGCTTTTGCGAGACTTTCCATTTGGAGGTTGCCGGGTGGAGGAACTGCGAATCC TGCGGGAAGAGGCTGCACTGTGGGTGCATTGTGTCGGTCCATGCATTTGTTCACCTCGAC GCCGGAGGGGTCGAGTGCGTCATGTGTGCTCGCAAGTCGCATGCTGCAATGGCACCAAGT CAGATATGGTCATCTTCCATGCATATGGCTCAAAATGTAGCTGATAGAAAAGACAATTTT GTCAAGAGCTGGAGACCTCCTGCCGGGCAATTTTCAAGCCAGTGGCGGCAGAATAATATG TGGAGTATGTCCACCATGCAGTCTGACTTGCAGCAGCGCCTAGCTTTTGAGTTTGATAGG CCTAGTGGCAGTGAAAAATTGCTTCCAGGGCGCACTTTTATTCATGCCCATGAGAAGAAA TTTGATGACATGCATGACAGATCAACAACACCTGCTGGCATGAACCAGATTATGAGGGAG AGGTATGCCAATGGGCATACTCAGCACACCACCCTGGATCCGACGTACGCTTACACTCTC TATCACAGAGAAGGAACAAATCCAAATCTTCATGACCATAGTCACCATGCAGGAGAAAAT GACCATTTGACTGCAAGGAAAGGAGTAACTTCAGATCCTTGTTCCTCTGTATCTACTACC TTCAAGCTTGATTCACACCATCCGTCCATTTTGAAAGATGATCCATCAGCCGTACCAGCT GGGTTGTCTTCTAATTTTTCATCAGCAAATGGCCCAAAAGACCATATCAGAATTGGACCA ACTCAGCAGCAGCAGCAAATGGCTTCCTCCTCATTGCAGAAACAATTCTATTCCCATAGT GTGATTGATAACGATTTTCAAGCGCAATTGCGCAATGGAAGGCCTAGAATGGATGCAAAG GCGAGATCTCAGTTGCTTCCACGCTATTGGCCTAGAATAACAGATCAAGAGCTACAGCAC CTATCTGGAGACTCAAATTCTGTTATTACCCCTTTGTTTGAGAAAATGTTAAGTGCTAGT GATGCTGGACGGATTGGTCGTTTGGTGTTGCCAAAGAAATGTGCTGAGGCGTACTTCCCT GCCATCTCTCAGGCAGAAGGGCTTCCCTTAAAAGTTCAGGATGCTACTGGTAAGGAATGG GTGTTCCAGTTCCGCTTTTGGCCCAATAATAACAGCAGGATGTATGTATTGGAGGGTGTC ACACCTTGCATTCAATCGATGCAGTTACAAGCAGGCGATACAGTAACCTTTAGCCGAATA GATCCAGAAGGGAAGCTGGTCATGGGATTTCGAAAGGCAACAAATCTTTCTGCAGAACAG GACCAACCTACAAAGCCTGCCAATGGTGTACTACCCCCTCCAGAAGCAAATAATAAAGTT GTTGTCCCAGATTCTAGTCCTAATGCTGCTGTACCTCGACCAATTAAAGTCAACACAGAG AGCAAAAGTTCCAGCCCTGTGGAACAAGCCACTGCCTGTAAAATTGACAAAGGTGCATTA CCACAAAAGGAAGGGCCAGGAACTTCAAGTTCCTCCCCACTACCTGTCAAGAGAAAGGCA ACTTCTGTTGGTCCGAAGATCAAACGGTTCCACATGGACAGTGAGGAATCCATGGAATTG AAGATAACATGGGAGGAAGCTCAAGAATTACTTCGTCCTCCTCCTAAGGCCCCTTCAATT GTTGTTGTTGATGGCCATGAGTTTGAGGAATATGAGGAGCCACCAATACTTGGGAGGAGG ACATATTTTGTGACAGACCAATCAGGTGAGAATCATCAATGGGCTCAATGTGAGGATTGC TCTAAGTGGCGTAAACTGCCGGTGGACGCCCTTTTGCCCTCTAAGTGGACCTGCTCTGAC AATAAATGGGATTCTGAAAGGTCTTCCTGTGATTCTGCCCAAGAGATAAATATGGAGGAG CTTGGCGAAATGATTCCTATCAAACCTGGTGCTGCAAAAAAGACCAAAGGGAAGGTAGAT ACTGACAATATTGATGTTTCAGATGGGCTGGACACACTCGCAAATCTTGCAATTCTTGGT GAAGGTGAATCTCTCCCTTCCCAGCCAACCACAAGGCATCCCCGCCATCGCCCTGGCTGC TCATGCATAGTCTGCATACAACCACCCAGCGGAAAGGGACCAAAGCACAAACAGACGTGC ACTTGCAACGTCTGTATGACAGTGCGACGCCGTTTCAGGACGCTTATGATGCGGCGCGAG AAGCGCCAGCAGTCAGAGAAGGACTCTGGGGTGCCTCGCAAAAGAGAGCCAGGTCAATCC AGCGAGCCAGTTCCACAATCTGGCTCTGGTGCTCATCCAACCAGTACTAGCTCTCCTCAC CAGAGAGCAGATACCAACGGCGAAGGTCCTGAAGACATGTCCATTGACAACAAGAGGACC TCCTCTCCTGTCAAGAACCAGATTGACCTGAACAGTCAGCCTGAGCGGGAAGACGAGCAG TCACCGAAATCCGATGCGACGAGACTCCTCAGGGACAACCCAACCTAG

Peptide Sequence

PEP ID	Os07t0563300-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:22534900:22542783:1 gene:Os07g0563300 transcript:Os07t0563300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GERMINATION DEFECTIVE 1 description:B3 domain transcriptional repressor, Regulator of seed germination and seedling development (Os07t0563300-01)
Sequence	MSSPAQPPPTRPPVAAPPPSLAAAAPISVQPPPLQPKPPPHPQQPPQAVVSVGVGPPPPT PQHQQQQQGPPGHAPPQQRPRICFNAHCKDPKSDGPRRRGWRLRNGDFAELCDRCYHSFE HGGFCETFHLEVAGWRNCESCGKRLHCGCIVSVHAFVHLDAGGVECVMCARKSHAAMAPS QIWSSSMHMAQNVADRKDNFVKSWRPPAGQFSSQWRQNNMWSMSTMQSDLQQRLAFEFDR PSGSEKLLPGRTFIHAHEKKFDDMHDRSTTPAGMNQIMRERYANGHTQHTTLDPTYAYTL YHREGTNPNLHDHSHHAGENDHLTARKGVTSDPCSSVSTTFKLDSHHPSILKDDPSAVPA GLSSNFSSANGPKDHIRIGPTQQQQQMASSSLQKQFYSHSVIDNDFQAQLRNGRPRMDAK ARSQLLPRYWPRITDQELQHLSGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFP AISQAEGLPLKVQDATGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRI DPEGKLVMGFRKATNLSAEQDQPTKPANGVLPPPEANNKVVVPDSSPNAAVPRPIKVNTE SKSSSPVEQATACKIDKGALPQKEGPGTSSSSPLPVKRKATSVGPKIKRFHMDSEESMEL KITWEEAQELLRPPPKAPSIVVVDGHEFEEYEEPPILGRRTYFVTDQSGENHQWAQCEDC SKWRKLPVDALLPSKWTCSDNKWDSERSSCDSAQEINMEELGEMIPIKPGAAKKTKGKVD TDNIDVSDGLDTLANLAILGEGESLPSQPTTRHPRHRPGCSCIVCIQPPSGKGPKHKQTC TCNVCMTVRRRFRTLMMRREKRQQSEKDSGVPRKREPGQSSEPVPQSGSGAHPTSTSSPH QRADTNGEGPEDMSIDNKRTSSPVKNQIDLNSQPEREDEQSPKSDATRLLRDNPT

Transcript Sequence

Transcript ID	Os07t0563300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:22534900:22542783:1 gene:Os07g0563300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GERMINATION DEFECTIVE 1 description:B3 domain transcriptional repressor, Regulator of seed germination and seedling development (Os07t0563300-01)
Sequence	GGCTCTCTCGTCTTATTCCGTCCGTCCCCCACGATTCCCACACACCCCAAAACCCCCCCT CCTCTCCTCTCTCGCCGCGCGGCGCCGCGCGCCCCGGGGGGACTCGTCGCGGCCGGCCTT AGGGTTTCGAGGCCCATGTCGTCGCCGGCGCAGCCGCCCCCGACGCGGCCGCCGGTGGCC GCCCCGCCCCCATCCCTCGCGGCGGCGGCCCCCATCTCGGTGCAGCCGCCCCCGCTCCAG CCGAAACCGCCGCCGCATCCGCAGCAGCCGCCTCAGGCGGTCGTCTCGGTTGGGGTTGGG CCGCCGCCGCCGACGCCGCAGCATCAGCAGCAGCAGCAGGGCCCCCCCGGTCACGCGCCG CCGCAGCAGCGGCCCAGGATCTGCTTCAACGCGCACTGCAAGGACCCCAAATCCGACGGC CCGCGCCGCCGCGGATGGCGACTCCGCAACGGCGACTTCGCCGAGCTCTGCGACCGATGC TATCACTCGTTCGAGCATGGGGGCTTTTGCGAGACTTTCCATTTGGAGGTTGCCGGGTGG AGGAACTGCGAATCCTGCGGGAAGAGGCTGCACTGTGGGTGCATTGTGTCGGTCCATGCA TTTGTTCACCTCGACGCCGGAGGGGTCGAGTGCGTCATGTGTGCTCGCAAGTCGCATGCT GCAATGGCACCAAGTCAGATATGGTCATCTTCCATGCATATGGCTCAAAATGTAGCTGAT AGAAAAGACAATTTTGTCAAGAGCTGGAGACCTCCTGCCGGGCAATTTTCAAGCCAGTGG CGGCAGAATAATATGTGGAGTATGTCCACCATGCAGTCTGACTTGCAGCAGCGCCTAGCT TTTGAGTTTGATAGGCCTAGTGGCAGTGAAAAATTGCTTCCAGGGCGCACTTTTATTCAT GCCCATGAGAAGAAATTTGATGACATGCATGACAGATCAACAACACCTGCTGGCATGAAC CAGATTATGAGGGAGAGGTATGCCAATGGGCATACTCAGCACACCACCCTGGATCCGACG TACGCTTACACTCTCTATCACAGAGAAGGAACAAATCCAAATCTTCATGACCATAGTCAC CATGCAGGAGAAAATGACCATTTGACTGCAAGGAAAGGAGTAACTTCAGATCCTTGTTCC TCTGTATCTACTACCTTCAAGCTTGATTCACACCATCCGTCCATTTTGAAAGATGATCCA TCAGCCGTACCAGCTGGGTTGTCTTCTAATTTTTCATCAGCAAATGGCCCAAAAGACCAT ATCAGAATTGGACCAACTCAGCAGCAGCAGCAAATGGCTTCCTCCTCATTGCAGAAACAA TTCTATTCCCATAGTGTGATTGATAACGATTTTCAAGCGCAATTGCGCAATGGAAGGCCT AGAATGGATGCAAAGGCGAGATCTCAGTTGCTTCCACGCTATTGGCCTAGAATAACAGAT CAAGAGCTACAGCACCTATCTGGAGACTCAAATTCTGTTATTACCCCTTTGTTTGAGAAA ATGTTAAGTGCTAGTGATGCTGGACGGATTGGTCGTTTGGTGTTGCCAAAGAAATGTGCT GAGGCGTACTTCCCTGCCATCTCTCAGGCAGAAGGGCTTCCCTTAAAAGTTCAGGATGCT ACTGGTAAGGAATGGGTGTTCCAGTTCCGCTTTTGGCCCAATAATAACAGCAGGATGTAT GTATTGGAGGGTGTCACACCTTGCATTCAATCGATGCAGTTACAAGCAGGCGATACAGTA ACCTTTAGCCGAATAGATCCAGAAGGGAAGCTGGTCATGGGATTTCGAAAGGCAACAAAT CTTTCTGCAGAACAGGACCAACCTACAAAGCCTGCCAATGGTGTACTACCCCCTCCAGAA GCAAATAATAAAGTTGTTGTCCCAGATTCTAGTCCTAATGCTGCTGTACCTCGACCAATT AAAGTCAACACAGAGAGCAAAAGTTCCAGCCCTGTGGAACAAGCCACTGCCTGTAAAATT GACAAAGGTGCATTACCACAAAAGGAAGGGCCAGGAACTTCAAGTTCCTCCCCACTACCT GTCAAGAGAAAGGCAACTTCTGTTGGTCCGAAGATCAAACGGTTCCACATGGACAGTGAG GAATCCATGGAATTGAAGATAACATGGGAGGAAGCTCAAGAATTACTTCGTCCTCCTCCT AAGGCCCCTTCAATTGTTGTTGTTGATGGCCATGAGTTTGAGGAATATGAGGAGCCACCA ATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGGTGAGAATCATCAATGGGCT CAATGTGAGGATTGCTCTAAGTGGCGTAAACTGCCGGTGGACGCCCTTTTGCCCTCTAAG TGGACCTGCTCTGACAATAAATGGGATTCTGAAAGGTCTTCCTGTGATTCTGCCCAAGAG ATAAATATGGAGGAGCTTGGCGAAATGATTCCTATCAAACCTGGTGCTGCAAAAAAGACC AAAGGGAAGGTAGATACTGACAATATTGATGTTTCAGATGGGCTGGACACACTCGCAAAT CTTGCAATTCTTGGTGAAGGTGAATCTCTCCCTTCCCAGCCAACCACAAGGCATCCCCGC CATCGCCCTGGCTGCTCATGCATAGTCTGCATACAACCACCCAGCGGAAAGGGACCAAAG CACAAACAGACGTGCACTTGCAACGTCTGTATGACAGTGCGACGCCGTTTCAGGACGCTT ATGATGCGGCGCGAGAAGCGCCAGCAGTCAGAGAAGGACTCTGGGGTGCCTCGCAAAAGA GAGCCAGGTCAATCCAGCGAGCCAGTTCCACAATCTGGCTCTGGTGCTCATCCAACCAGT ACTAGCTCTCCTCACCAGAGAGCAGATACCAACGGCGAAGGTCCTGAAGACATGTCCATT GACAACAAGAGGACCTCCTCTCCTGTCAAGAACCAGATTGACCTGAACAGTCAGCCTGAG CGGGAAGACGAGCAGTCACCGAAATCCGATGCGACGAGACTCCTCAGGGACAACCCAACC TAGGGCTGCCTGCCCAAAAGGGAAGTCATACTGGCGATGGTAGATAACCGATGAAAAAGA TAATGTCTATACCAATGGAGAAATGCGGCGGGCGGATTTGTAGTGTAGCTCTGTAGATGT TACCTTTCTATACCAAAGATCTAGTTTATCCTGTGGCGGGAGAGATCCAGTTTTAATGTT ATCATACCATAGAACCAGGCGTCGGTGTTGTAGTAGAACCCGTTGCTGTTTGCCTAGGGC CCGTTGCTTTACCCTGTATGTAGTGATGTAGCGTGAGAGCGGCGCCCTTCGGCAGCATGT ACCTCTGGGCAAATTTATTTCATGTACCGGATCATCCATCCCTGTGCAAGGAGAGGATTT ACTATGTTGCTTACCGGGGTGGTTTCCCTTTGGCATTATAGCATGCATTCATATCTATAG TGTGATCTGACGTGATAATGTTTACCATCAAAGTTTACCCGTACTCAAATCACGGAATTC TGACGTGATATGTATAGTGTCGGTGT