Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0558400-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:22316343:22317935:-1 gene:Os07g0558400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:light-harvesting protein CP29 description:Similar to Chlorophyll a/b-binding protein CP29 precursor. (Os07t0558400-01)
Sequence	ATGGCGTCGTCGGTGGCAGCGGCGGCGAGCACGTTCCTGGGGACGAGGCTGGCGGACCCG GCGCCGCAGAGCGGGAGGATCGTGGCGAGGTTCGGGTTCGGCGGCGGGAAGAAGGCGGCG GCGAAGAAGGCGGCGAGGCCGTCGGCGCCGACGACGGACAGGCCGCTGTGGTTCCCCGGC GCGGTGGCGCCGGACTACCTGGACGGGTCGCTCGTCGGCGACTACGGCTTCGACCCGTTC GGCCTCGGGAAGCCGGCGGAGTACCTGCAGTTCGAGCTGGACTCGCTGGACCAGAACCTG GCCAAGAACAACGCCGGCGAGATCATCGGCACCCGGTTCGAGACCGGCGAGGTGAAGTCC ACCCCGTTCCAGCCCTACACCGAGGTGTTCGGCCTCCAGCGCTTCCGCGAGTGCGAGCTC ATCCACGGCCGCTGGGCCATGCTCGCCACCCTCGGCGCCCTCTCCGTCGAGTGGCTCACC GGCGTCACCTGGCAAGACGCCGGCAAGGTGGAGCTGGTGGATGGGTCGTCGTACCTGGGG CAGCCGCTGCCGTTCTCGATCTCGACGCTGATCTGGATCGAGGTGCTCGTCATCGGCTAC ATCGAGTTCCAGCGCAACGCGGAGCTGGACCCGGAGAAGAGGCTGTACCCGGGGGGGTCC TACTTCGACCCGCTCGGGTTGGCGTCGGACCCGGAGAAGAAGGAGCGGCTGCAGCTGGCG GAGATCAAGCACGCCCGCCTCGCCATGGTCGCCTTCCTCGGCTTCGCCGTGCAGGCCGCC GCCACCGGCAAGGGGCCCCTCAACAACTGGGCCACCCACCTCAGCGACCCGCTCCACACC ACCATCTTCGACACCTTCTCCTCATCCTCTTAA

Peptide Sequence

PEP ID	Os07t0558400-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:22316343:22317935:-1 gene:Os07g0558400 transcript:Os07t0558400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:light-harvesting protein CP29 description:Similar to Chlorophyll a/b-binding protein CP29 precursor. (Os07t0558400-01)
Sequence	MASSVAAAASTFLGTRLADPAPQSGRIVARFGFGGGKKAAAKKAARPSAPTTDRPLWFPG AVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEIIGTRFETGEVKS TPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLG QPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKERLQLA EIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTFSSSS

Transcript Sequence

Transcript ID	Os07t0558400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:22316343:22317935:-1 gene:Os07g0558400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:light-harvesting protein CP29 description:Similar to Chlorophyll a/b-binding protein CP29 precursor. (Os07t0558400-01)
Sequence	AACCCCCCCTCACCACCACCCACACATTCTCGAAGAAGGAGAAGAAGGAGAGGAGCAGCC ATGGCGTCGTCGGTGGCAGCGGCGGCGAGCACGTTCCTGGGGACGAGGCTGGCGGACCCG GCGCCGCAGAGCGGGAGGATCGTGGCGAGGTTCGGGTTCGGCGGCGGGAAGAAGGCGGCG GCGAAGAAGGCGGCGAGGCCGTCGGCGCCGACGACGGACAGGCCGCTGTGGTTCCCCGGC GCGGTGGCGCCGGACTACCTGGACGGGTCGCTCGTCGGCGACTACGGCTTCGACCCGTTC GGCCTCGGGAAGCCGGCGGAGTACCTGCAGTTCGAGCTGGACTCGCTGGACCAGAACCTG GCCAAGAACAACGCCGGCGAGATCATCGGCACCCGGTTCGAGACCGGCGAGGTGAAGTCC ACCCCGTTCCAGCCCTACACCGAGGTGTTCGGCCTCCAGCGCTTCCGCGAGTGCGAGCTC ATCCACGGCCGCTGGGCCATGCTCGCCACCCTCGGCGCCCTCTCCGTCGAGTGGCTCACC GGCGTCACCTGGCAAGACGCCGGCAAGGTGGAGCTGGTGGATGGGTCGTCGTACCTGGGG CAGCCGCTGCCGTTCTCGATCTCGACGCTGATCTGGATCGAGGTGCTCGTCATCGGCTAC ATCGAGTTCCAGCGCAACGCGGAGCTGGACCCGGAGAAGAGGCTGTACCCGGGGGGGTCC TACTTCGACCCGCTCGGGTTGGCGTCGGACCCGGAGAAGAAGGAGCGGCTGCAGCTGGCG GAGATCAAGCACGCCCGCCTCGCCATGGTCGCCTTCCTCGGCTTCGCCGTGCAGGCCGCC GCCACCGGCAAGGGGCCCCTCAACAACTGGGCCACCCACCTCAGCGACCCGCTCCACACC ACCATCTTCGACACCTTCTCCTCATCCTCTTAATTTAAGCTCTTTCGCGCGCAATTCAAA CGGGATCGATGCGTTGGTGTGCGTTCGCGCGCGCTGTTTAGTTTTGTGATGACGAGCGAG CTGGGAGGGTATGGAGAGAGGAGAGGTCATCCTTTTGTTGATTACTACTTAAATTAGGAA AGCTGGGTTGGTGGTTAATGGCGACTTGCATGGTGGTGATTTGTAATATAAGAACACCCA AGATGATGAATTAATGCATCCACTTGTACATCGATCGATCGATCTTGGTATTTGACTAAG TGAGTGTGACTGTGAATGCAC