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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0556800-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:22222300:22223336:-1 gene:Os07g0556800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosome-inactivating protein family protein. (Os07t0556800-01)
Sequence

ATGGTGAAGCCTGCAGCCGTCCTCCTGCTCCTCTACCTTCCCCTTCTCGCCACCCCGACG
AGGATCGGCCTCAGCCGCAACCCCTTCGTCCCTCCTCCCAACTCTGTACCTACCATAGAC
AGGACGGAGATGGACGTGAGCACGTCGCCGTACCGCGACTTGATCAAGAAATGGCGAGAC
CTCGTGCTCCTCAACACTCGCCCGGAGGTCATGGTGCCGGAAGACCATCCGGTGCTGGCT
CCCCAGTACGACGACACCGTCCCGCCGGAACGGTTGCTGTTGCCGAAGCTGGTGGCCAAC
GGGGACAAGACGGCCACGCTCGCCCTCCGCGACTCCAACATCTACTTCATAGGTTTCGCC
AACAAAGCAGGGCAATGGTTCTCTTTCAAGGACAGGAACGACCTGCCGCCTTCCTTTCGG
GCCAGGCCTCTCAGCTTTGGAGTGGACTACGCATCGATCGCCGGCTTCCGGAAAAACCTT
CCAAACTACCCTCTCGGTAGGCGTCAAACGGAGTGGGCGGTAAAAGTTCTTTCAGAATAC
GATCCAAATCGCACTGATGAAGCAACCATAAAACGTGCGGTAGTGATCATCCTTCTTACC
TTCTGCGAAGCTCTCAGGTTCTTTCCTATAAGAAATGCGGTTGAAATAGGTTGGGACTCC
GTTGCCTACATTACCTCAACCGATGCGGATCGTCTCGTATGTTGGGGACAAATCTCATAT
ATGCTTGAATATAGTTTTATGTCCGGTCATTCATGGGACTCGGAGGAACAACGTACTCGC
CTCAAGAATCTAGCACGAGATTGTAAAATCTTTAACGAACCTCAGGCACTTGAAACCGTT
GATGTGTTAGAGTACGGAGCTATCTTAGGTGCTAAAAGTACAAATTGGTTGTATTAA

Peptide Sequence

PEP ID

Os07t0556800-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:22222300:22223336:-1 gene:Os07g0556800 transcript:Os07t0556800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosome-inactivating protein family protein. (Os07t0556800-01)
Sequence

MVKPAAVLLLLYLPLLATPTRIGLSRNPFVPPPNSVPTIDRTEMDVSTSPYRDLIKKWRD
LVLLNTRPEVMVPEDHPVLAPQYDDTVPPERLLLPKLVANGDKTATLALRDSNIYFIGFA
NKAGQWFSFKDRNDLPPSFRARPLSFGVDYASIAGFRKNLPNYPLGRRQTEWAVKVLSEY
DPNRTDEATIKRAVVIILLTFCEALRFFPIRNAVEIGWDSVAYITSTDADRLVCWGQISY
MLEYSFMSGHSWDSEEQRTRLKNLARDCKIFNEPQALETVDVLEYGAILGAKSTNWLY

Transcript Sequence

Transcript ID

Os07t0556800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:22222300:22223336:-1 gene:Os07g0556800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosome-inactivating protein family protein. (Os07t0556800-01)
Sequence

AAAAAAAGCCCAAACCTTCAAGTTCACCTTTGCTTAATTGCACCAGCTTAGCCGTCATGG
TGAAGCCTGCAGCCGTCCTCCTGCTCCTCTACCTTCCCCTTCTCGCCACCCCGACGAGGA
TCGGCCTCAGCCGCAACCCCTTCGTCCCTCCTCCCAACTCTGTACCTACCATAGACAGGA
CGGAGATGGACGTGAGCACGTCGCCGTACCGCGACTTGATCAAGAAATGGCGAGACCTCG
TGCTCCTCAACACTCGCCCGGAGGTCATGGTGCCGGAAGACCATCCGGTGCTGGCTCCCC
AGTACGACGACACCGTCCCGCCGGAACGGTTGCTGTTGCCGAAGCTGGTGGCCAACGGGG
ACAAGACGGCCACGCTCGCCCTCCGCGACTCCAACATCTACTTCATAGGTTTCGCCAACA
AAGCAGGGCAATGGTTCTCTTTCAAGGACAGGAACGACCTGCCGCCTTCCTTTCGGGCCA
GGCCTCTCAGCTTTGGAGTGGACTACGCATCGATCGCCGGCTTCCGGAAAAACCTTCCAA
ACTACCCTCTCGGTAGGCGTCAAACGGAGTGGGCGGTAAAAGTTCTTTCAGAATACGATC
CAAATCGCACTGATGAAGCAACCATAAAACGTGCGGTAGTGATCATCCTTCTTACCTTCT
GCGAAGCTCTCAGGTTCTTTCCTATAAGAAATGCGGTTGAAATAGGTTGGGACTCCGTTG
CCTACATTACCTCAACCGATGCGGATCGTCTCGTATGTTGGGGACAAATCTCATATATGC
TTGAATATAGTTTTATGTCCGGTCATTCATGGGACTCGGAGGAACAACGTACTCGCCTCA
AGAATCTAGCACGAGATTGTAAAATCTTTAACGAACCTCAGGCACTTGAAACCGTTGATG
TGTTAGAGTACGGAGCTATCTTAGGTGCTAAAAGTACAAATTGGTTGTATTAATGCAAGG
TGTAAGCGCCCTCCTAGCTAATATAGGCGCACTTCCACAATTTATGTACTCCAATATTAT
GCAACTCACATGGTGTG