Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0554500-00
CDS Infomation

cds chromosome:IRGSP-1.0:7:22082602:22083848:1 gene:Os07g0554500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F-box protein 389 description:Similar to OSIGBa0107A02.1 protein. (Os07t0554500-00)
Sequence

ATGGCCTCGCCGGCGCGGCGGTCCGGGCACCGTCGGCTCGACGACACCCAGGAGTTGGCC
CTCCCCGACGACCTCCTCGCGGAGGTCCTGATCCGCCTCCCGTCCCTCGCCGACCTCGGC
CGCGCCTCCGCCGCCTGCGCCTCCTTCCGCCGCGTCGCCACCGACCCGGCCTTCCTCCGC
CGCGCGCGCGCGCTCCACCCGCCGTCGCTCCTCGGGTTCTGCGCCTCGCCCGGCGGCTTC
CACCCCGCCGAGCCGCCCCACCCGTCCGCGCCCGCCGCCCGAGCCGTGCTCCGCGCCGCC
GACTTCGGCTTCTCGTTCCTCCCGTCCCCGCTCAGCTGGGTCGTCCGTGACGTCCTCGAC
GGCCGCTTCCTGCTCGACCGCGACGGCGGGGAAGGCGGCGCCGCCCTGAGGATCCTCGCC
GTGTGCGACCCCCTGTTCCGGCGGTACTCGCTGCTCCCCCAGATTCCTGAAGACCTAGCC
GCCTCCGTCCGCCGGCGACCGCGCCGCGGCGTGGCTCCCAACGGCAGATTCGATACCTTC
TTCGCTCCGATCGGCGAAGAGGAGCGCGCCGCGGCGGCGGTGGCTGAGACGTCATTCAAG
GTGATCTGGATTGCGCAGTGCCCAGATAAGCTTGTGGCCTTTGTCTTCTCTTCAGTCACT
GGACAGTGGCGAGCCACTGCATCTCCCTGCTGGGGCGATCTGAGCCCTGCCTTCTCGCGC
CCCGCTTGCCGCTCCCTGTTGCGCCGCAGCTACGCATACGGCTGCTTCTACTGGATGATG
GGTGACTCAGGGAATCTGCTTGTGCTCGACATGTGTAAGATGAATTTCTCCATTGTCAAG
CTCCCATCGAGCCCGCCTGGTCGTGACATTGTGGAATGCGCCATCGTAGAGGCAGGAGAA
GGCAAGATTGGGATGTTTGCTTTCTGTAATTGCATCGACATTTATGCACTCGAGCTCTAT
TCTACAACCATGCAAAATGAAGGAAGAGTTGCCAGCAAGTGGAGTTTTGAGAGTGCAATT
TTAATGCCTTCTCGGGATGGATTTCGCGTGCTAGGTGTGACTGGCAAGGAATTGTGCTTA
CAAGTTTCTCCTATTTGTGTGAGCGGATGTTATTTGCTGGAGTTCAGTACAAATCCAAGT
TGCAAGAAACTTGAGTTTGTCCGGAGGGTGATCAGGGGTGTTCGAACTTCTCTGCCATTC
CTGTATGTCGGCTACCCACCATCTCTATCATCACCAAGCATATGA

Peptide Sequence

PEP ID

Os07t0554500-00
PEP Infomation

pep chromosome:IRGSP-1.0:7:22082602:22083848:1 gene:Os07g0554500 transcript:Os07t0554500-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F-box protein 389 description:Similar to OSIGBa0107A02.1 protein. (Os07t0554500-00)
Sequence

MASPARRSGHRRLDDTQELALPDDLLAEVLIRLPSLADLGRASAACASFRRVATDPAFLR
RARALHPPSLLGFCASPGGFHPAEPPHPSAPAARAVLRAADFGFSFLPSPLSWVVRDVLD
GRFLLDRDGGEGGAALRILAVCDPLFRRYSLLPQIPEDLAASVRRRPRRGVAPNGRFDTF
FAPIGEEERAAAAVAETSFKVIWIAQCPDKLVAFVFSSVTGQWRATASPCWGDLSPAFSR
PACRSLLRRSYAYGCFYWMMGDSGNLLVLDMCKMNFSIVKLPSSPPGRDIVECAIVEAGE
GKIGMFAFCNCIDIYALELYSTTMQNEGRVASKWSFESAILMPSRDGFRVLGVTGKELCL
QVSPICVSGCYLLEFSTNPSCKKLEFVRRVIRGVRTSLPFLYVGYPPSLSSPSI

Transcript Sequence

Transcript ID

Os07t0554500-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:22082602:22083848:1 gene:Os07g0554500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F-box protein 389 description:Similar to OSIGBa0107A02.1 protein. (Os07t0554500-00)
Sequence

CGATGGCCTCGCCGGCGCGGCGGTCCGGGCACCGTCGGCTCGACGACACCCAGGAGTTGG
CCCTCCCCGACGACCTCCTCGCGGAGGTCCTGATCCGCCTCCCGTCCCTCGCCGACCTCG
GCCGCGCCTCCGCCGCCTGCGCCTCCTTCCGCCGCGTCGCCACCGACCCGGCCTTCCTCC
GCCGCGCGCGCGCGCTCCACCCGCCGTCGCTCCTCGGGTTCTGCGCCTCGCCCGGCGGCT
TCCACCCCGCCGAGCCGCCCCACCCGTCCGCGCCCGCCGCCCGAGCCGTGCTCCGCGCCG
CCGACTTCGGCTTCTCGTTCCTCCCGTCCCCGCTCAGCTGGGTCGTCCGTGACGTCCTCG
ACGGCCGCTTCCTGCTCGACCGCGACGGCGGGGAAGGCGGCGCCGCCCTGAGGATCCTCG
CCGTGTGCGACCCCCTGTTCCGGCGGTACTCGCTGCTCCCCCAGATTCCTGAAGACCTAG
CCGCCTCCGTCCGCCGGCGACCGCGCCGCGGCGTGGCTCCCAACGGCAGATTCGATACCT
TCTTCGCTCCGATCGGCGAAGAGGAGCGCGCCGCGGCGGCGGTGGCTGAGACGTCATTCA
AGGTGATCTGGATTGCGCAGTGCCCAGATAAGCTTGTGGCCTTTGTCTTCTCTTCAGTCA
CTGGACAGTGGCGAGCCACTGCATCTCCCTGCTGGGGCGATCTGAGCCCTGCCTTCTCGC
GCCCCGCTTGCCGCTCCCTGTTGCGCCGCAGCTACGCATACGGCTGCTTCTACTGGATGA
TGGGTGACTCAGGGAATCTGCTTGTGCTCGACATGTGTAAGATGAATTTCTCCATTGTCA
AGCTCCCATCGAGCCCGCCTGGTCGTGACATTGTGGAATGCGCCATCGTAGAGGCAGGAG
AAGGCAAGATTGGGATGTTTGCTTTCTGTAATTGCATCGACATTTATGCACTCGAGCTCT
ATTCTACAACCATGCAAAATGAAGGAAGAGTTGCCAGCAAGTGGAGTTTTGAGAGTGCAA
TTTTAATGCCTTCTCGGGATGGATTTCGCGTGCTAGGTGTGACTGGCAAGGAATTGTGCT
TACAAGTTTCTCCTATTTGTGTGAGCGGATGTTATTTGCTGGAGTTCAGTACAAATCCAA
GTTGCAAGAAACTTGAGTTTGTCCGGAGGGTGATCAGGGGTGTTCGAACTTCTCTGCCAT
TCCTGTATGTCGGCTACCCACCATCTCTATCATCACCAAGCATATGA