Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0549200-02
CDS Infomation

cds chromosome:IRGSP-1.0:7:21802733:21805209:-1 gene:Os07g0549200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0549200-01);Pentatricopeptide repeat domain containing protein. (Os07t0549200-02)
Sequence

ATGGCCGCGGCCTCTCGGGCTCCCCTCGCTCGCCGCTCCCTCCTCCTCCTCCGCTACAAG
GCCCTCCCTCTCTCCTCCCCCTCCTCCTCCTCCTCGTCGACCCACAGCCTCCTCCCGAGG
CCCCCCGCGTTGTGGCCGCCTCCGCCTCCGCCGCCGCCCCACGGATGCGAGCGGCGGCGC
GCGTTCCACGACGGGCGGCCGCGGGGCCCGCTGTGGCGGAGCAAGAAGCTGATCGGGAAG
GAGGCCCTGTTCGCGATCCAGGGGCTGAAGCGGTTCAAGGGGGACGAGGAGAGGCTCGGG
GAGTTCGTGAGGCGGTACGTGGCGCGGCTGCTCAAGGCCGACAAGCTCGCCGTGCTCGGG
GAGCTGGAGCGCCAGGAGGAGGTCGATCTTGCCGTCAAGATGTTTAGGATAATACAAAAA
GAGGACTGGTACAAGCCAGATGTTTTCATGTACAAGGACTTGATTGTTGCTCTAGCCAAG
TGTAAGAAGATGGATGAAGCAATGGTAATCTGGGGGAACATGACAGATGAGAACCTTTTC
CCTGACGCACAGACATATGCTGAAGTCATAAGAGGATTCTTGAGATACGGTTCCCCATCA
GACGCAATGAACATTTATGAGGAAATGAAAAAGTCACCTGATCCTCCGGAAGAATTACCT
TTCAGGGTATTATTGAAGGGTCTTTTACCGCACCCACTTTTAAGGAACAGAGTGAAGCAA
GATTTTGAAGAATTGTTTCCGGAAAGGCATATCTATGATCCCCCAGAAGAAATATTTGGT
CTGCGCTGA

Peptide Sequence

PEP ID

Os07t0549200-02
PEP Infomation

pep chromosome:IRGSP-1.0:7:21802733:21805209:-1 gene:Os07g0549200 transcript:Os07t0549200-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0549200-01);Pentatricopeptide repeat domain containing protein. (Os07t0549200-02)
Sequence

MAAASRAPLARRSLLLLRYKALPLSSPSSSSSSTHSLLPRPPALWPPPPPPPPHGCERRR
AFHDGRPRGPLWRSKKLIGKEALFAIQGLKRFKGDEERLGEFVRRYVARLLKADKLAVLG
ELERQEEVDLAVKMFRIIQKEDWYKPDVFMYKDLIVALAKCKKMDEAMVIWGNMTDENLF
PDAQTYAEVIRGFLRYGSPSDAMNIYEEMKKSPDPPEELPFRVLLKGLLPHPLLRNRVKQ
DFEELFPERHIYDPPEEIFGLR

Transcript Sequence

Transcript ID

Os07t0549200-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:21802733:21805209:-1 gene:Os07g0549200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0549200-01);Pentatricopeptide repeat domain containing protein. (Os07t0549200-02)
Sequence

GGCGGCGAGGAGGAGGGTTTTGCACCCTTGCCCCCCCGCCATGGCCGCGGCCTCTCGGGC
TCCCCTCGCTCGCCGCTCCCTCCTCCTCCTCCGCTACAAGGCCCTCCCTCTCTCCTCCCC
CTCCTCCTCCTCCTCGTCGACCCACAGCCTCCTCCCGAGGCCCCCCGCGTTGTGGCCGCC
TCCGCCTCCGCCGCCGCCCCACGGATGCGAGCGGCGGCGCGCGTTCCACGACGGGCGGCC
GCGGGGCCCGCTGTGGCGGAGCAAGAAGCTGATCGGGAAGGAGGCCCTGTTCGCGATCCA
GGGGCTGAAGCGGTTCAAGGGGGACGAGGAGAGGCTCGGGGAGTTCGTGAGGCGGTACGT
GGCGCGGCTGCTCAAGGCCGACAAGCTCGCCGTGCTCGGGGAGCTGGAGCGCCAGGAGGA
GGTCGATCTTGCCGTCAAGATGTTTAGGATAATACAAAAAGAGGACTGGTACAAGCCAGA
TGTTTTCATGTACAAGGACTTGATTGTTGCTCTAGCCAAGTGTAAGAAGATGGATGAAGC
AATGGTAATCTGGGGGAACATGACAGATGAGAACCTTTTCCCTGACGCACAGACATATGC
TGAAGTCATAAGAGGATTCTTGAGATACGGTTCCCCATCAGACGCAATGAACATTTATGA
GGAAATGAAAAAGTCACCTGATCCTCCGGAAGAATTACCTTTCAGGGTATTATTGAAGGG
TCTTTTACCGCACCCACTTTTAAGGAACAGAGTGAAGCAAGATTTTGAAGAATTGTTTCC
GGAAAGGCATATCTATGATCCCCCAGAAGAAATATTTGGTCTGCGCTGAGGTTGAGGATT
CAACGACTTCATGCACCTTCTGCGTTTGGACTTCATTCGGATTACCTGCATCTCCAGAAG
TTCTCCAGAATTTGATGTTTGGAGTGGAAATCTGTCAGGTGAAAGATTAAGTTATCGATG
ATCATGCTTAAGAGAGGTAGACAGAAACAAACAGACCATTCCATTAGCTGTACTGTAATA
TCTATGGTTACGGAAATTTTGTTGTTCAGGCAATCTCTTAAAATATCAGGCCTTTTATTC
ACAAATGCCACTTTGTGTATCTGTAATCCAGGATATTTTGAAAAGTAGCATAAAAAAAAC
TCTTTCATTGGG