Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0545800-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:21614976:21619678:1 gene:Os07g0545800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CHITIN INDUSIBLE GIBBERELLIN RESPONSIVE GENE 1 description:Similar to Chitin-inducible gibberellin-responsive protein. (Os07t0545800-01)
Sequence

ATGGACTTGCACCAGTTATTAAAGTACAGATTGACTGGCGCTAACGTTGTGTACGAAATT
CCTACAGAGAACAACTTGCAAAACTCTCCCTGGCAAGCTAACCCACTGAAGTACGAGTTC
AGCGATTCCCCATACACCCCTCTCTCTTCCCAATTTGAGTGTGACAATTTGTCTGCTCTT
ACCAACACTCCAGATAACCAGAGCTCTACAGAAACCATTTCAGCCCAACCAATCTCCCCA
TTGGAAGCAGACAGCTCATATAGACAGGCGGGTATTCTTCTCCAGGAGAACATTCAAGTG
GGAGCTGATCCGTTGTATGCTACATCAAGACATAATATGCAACACGCCTTACGGGAGATT
GAGACTGTTCTGATGGCACCTGATACAGATGATGCAACAACTAGCACCAAGCATGAGTTT
GAGGAAATCAAGCCTGCTCAGCTTGTGAGGCAGCGGTCGAGAACATGGAGTCATGAATCA
CGGCAGCCGTTACCTGGAGTTGGTCGGTCACAGTTTGCATCTGGTGGATACCCCACAGCA
AGCTATGAATTTCGTCCAGAGAAACGGCAAAGGGAGTTAAGGGAAGACCCTCAGATAATT
GTGAAGCAGCTATTAACCAGGTGTGCTGAGGCTCTGAGTGAGGACAGGACAGAGGAGTTC
CATAAGCTTGTTCAGGAGGCTCGTGGAGTGGTCTCAATCAACGGGGAACCAATCCAACGT
CTAGGTGCTTACCTACTGGAGGGTTTGGTTGCTAGACATGGAAACTCTGGCACAAACATC
TACCGTGCTCTGAAGTGCCGTGAGCCAGAGAGCAAGGAGCTCCTGTCCTACATGAGAATT
CTATACAATATCTGCCCTTACTTCAAGTTTGGCTATATGGCAGCCAATGGGGCGATTGCA
GAAGCATTGAGAACTGAGAACAATATCCACATAATTGATTTTCAGATTGCTCAAGGGACT
CAATGGATCACACTGATACAAGCATTAGCTGCAAGGCCTGGTGGTCCTCCTCGTGTGCGG
ATCACCGGGATAGATGACCCAGTGTCAGAGTATGCTCGTGGTGAAGGTCTTGACATTGTG
GGGAAAATGTTGAAAAGCATGTCTGAAGAATTCAAAATACCTCTGGAGTTTACGCCTCTG
TCTGTCTATGCCACACAAGTCACGAAAGAGATGCTTGAGATCAGGCCAGGTGAAGCACTG
TCTGTAAACTTCACACTCCAGCTACACCACACCCCGGACGAGAGCGTGGATGTCAACAAC
CCACGCGATGGTCTGCTCCGGATGGTGAAAGGGCTGTCCCCGAAGGTGACTACTTTGGTA
GAGCAGGAGTCACACACCAACACAACGCCTTTCTTGATGAGGTTTGGGGAGACCATGGAG
TACTACTCCGCCATGTTCGAGTCGATCGACGCCAACCTGCCGCGGGACAACAAGGAGAGG
ATCAGCGTGGAGCAGCACTGCCTCGCCAAGGACATCGTCAACATCATCGCCTGCGAGGGG
AAGGACAGGGTGGAGAGGCATGAGCTGCTTGGCAAGTGGAAGTCGAGGCTGACCATGGCC
GGCTTCAGGCCTTACCCGTTGAGCTCGTACGTCAACTCGGTGATAAGGAAGCTTCTCGCC
TGCTACTCCGATAAATACACATTGGATGAGAAGGACGGCGCGATGCTTCTCGGCTGGAGG
AGCAGAAAGCTGATATCTGCTTCTGCGTGGCACTGA

Peptide Sequence

PEP ID

Os07t0545800-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:21614976:21619678:1 gene:Os07g0545800 transcript:Os07t0545800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CHITIN INDUSIBLE GIBBERELLIN RESPONSIVE GENE 1 description:Similar to Chitin-inducible gibberellin-responsive protein. (Os07t0545800-01)
Sequence

MDLHQLLKYRLTGANVVYEIPTENNLQNSPWQANPLKYEFSDSPYTPLSSQFECDNLSAL
TNTPDNQSSTETISAQPISPLEADSSYRQAGILLQENIQVGADPLYATSRHNMQHALREI
ETVLMAPDTDDATTSTKHEFEEIKPAQLVRQRSRTWSHESRQPLPGVGRSQFASGGYPTA
SYEFRPEKRQRELREDPQIIVKQLLTRCAEALSEDRTEEFHKLVQEARGVVSINGEPIQR
LGAYLLEGLVARHGNSGTNIYRALKCREPESKELLSYMRILYNICPYFKFGYMAANGAIA
EALRTENNIHIIDFQIAQGTQWITLIQALAARPGGPPRVRITGIDDPVSEYARGEGLDIV
GKMLKSMSEEFKIPLEFTPLSVYATQVTKEMLEIRPGEALSVNFTLQLHHTPDESVDVNN
PRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFGETMEYYSAMFESIDANLPRDNKER
ISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFRPYPLSSYVNSVIRKLLA
CYSDKYTLDEKDGAMLLGWRSRKLISASAWH

Transcript Sequence

Transcript ID

Os07t0545800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:21614976:21619678:1 gene:Os07g0545800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CHITIN INDUSIBLE GIBBERELLIN RESPONSIVE GENE 1 description:Similar to Chitin-inducible gibberellin-responsive protein. (Os07t0545800-01)
Sequence

ATCGCAGCACACGAAAAGAGAACCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGA
GTGGAAGTGGATCGGGGCATCGCTGCGGCGTCGGGGCTGTGCAGATCGGAGGAGGTCATG
AACGACTAATCTCCGTTCATTTATTATGGACTTGCACCAGTTATTAAAGTACAGATTGAC
TGGCGCTAACGTTGTGTACGAAATTCCTACAGAGAACAACTTGCAAAACTCTCCCTGGCA
AGCTAACCCACTGAAGTACGAGTTCAGCGATTCCCCATACACCCCTCTCTCTTCCCAATT
TGAGTGTGACAATTTGTCTGCTCTTACCAACACTCCAGATAACCAGAGCTCTACAGAAAC
CATTTCAGCCCAACCAATCTCCCCATTGGAAGCAGACAGCTCATATAGACAGGCGGGTAT
TCTTCTCCAGGAGAACATTCAAGTGGGAGCTGATCCGTTGTATGCTACATCAAGACATAA
TATGCAACACGCCTTACGGGAGATTGAGACTGTTCTGATGGCACCTGATACAGATGATGC
AACAACTAGCACCAAGCATGAGTTTGAGGAAATCAAGCCTGCTCAGCTTGTGAGGCAGCG
GTCGAGAACATGGAGTCATGAATCACGGCAGCCGTTACCTGGAGTTGGTCGGTCACAGTT
TGCATCTGGTGGATACCCCACAGCAAGCTATGAATTTCGTCCAGAGAAACGGCAAAGGGA
GTTAAGGGAAGACCCTCAGATAATTGTGAAGCAGCTATTAACCAGGTGTGCTGAGGCTCT
GAGTGAGGACAGGACAGAGGAGTTCCATAAGCTTGTTCAGGAGGCTCGTGGAGTGGTCTC
AATCAACGGGGAACCAATCCAACGTCTAGGTGCTTACCTACTGGAGGGTTTGGTTGCTAG
ACATGGAAACTCTGGCACAAACATCTACCGTGCTCTGAAGTGCCGTGAGCCAGAGAGCAA
GGAGCTCCTGTCCTACATGAGAATTCTATACAATATCTGCCCTTACTTCAAGTTTGGCTA
TATGGCAGCCAATGGGGCGATTGCAGAAGCATTGAGAACTGAGAACAATATCCACATAAT
TGATTTTCAGATTGCTCAAGGGACTCAATGGATCACACTGATACAAGCATTAGCTGCAAG
GCCTGGTGGTCCTCCTCGTGTGCGGATCACCGGGATAGATGACCCAGTGTCAGAGTATGC
TCGTGGTGAAGGTCTTGACATTGTGGGGAAAATGTTGAAAAGCATGTCTGAAGAATTCAA
AATACCTCTGGAGTTTACGCCTCTGTCTGTCTATGCCACACAAGTCACGAAAGAGATGCT
TGAGATCAGGCCAGGTGAAGCACTGTCTGTAAACTTCACACTCCAGCTACACCACACCCC
GGACGAGAGCGTGGATGTCAACAACCCACGCGATGGTCTGCTCCGGATGGTGAAAGGGCT
GTCCCCGAAGGTGACTACTTTGGTAGAGCAGGAGTCACACACCAACACAACGCCTTTCTT
GATGAGGTTTGGGGAGACCATGGAGTACTACTCCGCCATGTTCGAGTCGATCGACGCCAA
CCTGCCGCGGGACAACAAGGAGAGGATCAGCGTGGAGCAGCACTGCCTCGCCAAGGACAT
CGTCAACATCATCGCCTGCGAGGGGAAGGACAGGGTGGAGAGGCATGAGCTGCTTGGCAA
GTGGAAGTCGAGGCTGACCATGGCCGGCTTCAGGCCTTACCCGTTGAGCTCGTACGTCAA
CTCGGTGATAAGGAAGCTTCTCGCCTGCTACTCCGATAAATACACATTGGATGAGAAGGA
CGGCGCGATGCTTCTCGGCTGGAGGAGCAGAAAGCTGATATCTGCTTCTGCGTGGCACTG
ACAGTAGTATGTTGAGAAGAAGAAATGATAGAGAGCATATATATACATACCGATTCCCTG
GTCCAATTTACAGAATGATACCCTTTGATGTACCCTCAGTTTGATTGACAGCGGGTGTTG
CCTTCATTTATAGACCAGGATCAAACATTGACATTAGATTTGTAGAGAAGTTGTATGATA
ATAATTTTCTTTGCGATTCAATGTATGATGTATCCATGGCTGCCATAGTTAATAATATTC
TTGCATAGTCATATTGATCGGCTAATCACCCGTGGATTAGCGTTGTGTCTGTCTTGACAA
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