Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0543600-00
CDS Infomation

cds chromosome:IRGSP-1.0:7:21518901:21519967:-1 gene:Os07g0543600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Six-bladed beta-propeller, TolB-like domain containing protein. (Os07t0543600-00)
Sequence

ATGGGGGCCGTCCTCGGCACCGGGAGGGTGGGGACTCTGACTCGGGTGGCGCTGACGATC
GTCGTCTTCCTGCTGCTGTTGCCGTCGCACGCCCTCGCCGCGGCCGTCGCGAAGGACACC
TCCGCCACACTGGTCGAGACGCTGCCGCTGCCCACGACGCTGGTCGGCCCAGAGAGCGTC
GCGTTCGACAAGTTCGGCGATGGCCCCTACAGCGGCGTCTCCGACGGCCGCATCCTCCGC
TGGGACGGCGCCGACAAAGGCTGGACGACGTACTCCCACGCCCCGGGGTACAACGTCGCC
AAGTGCATGGCTCCCAAGCTCCATCCCGCGGAGCTCACCGAGAGCAAGTGCGGCCGGCCG
CTCGGCCTCCGGTTCCACAACACCTCCGGTAACCTCTACATCGCCGACGCGTACAAGGGC
CTCATGCGTGTCGGCCCGCGCGGCGGGGAGGCAACGGTGCTCGCCACGGAGGCCGACGGC
GTGCCGTTCAAGTTCACCAACGGCGTCGACGTCAACCAGGTCACCGGCGAGGTCTACTTC
ACCGACAGCAGCACGCGCTTCCAGCGATCCCAGCACGAGATGGTCACGGCCACCGGCGAC
TCCACGGGCCGCCTGATGAAGTACGACCCGACGACGGGCTACCTCGACGTGCTCCAGTCC
GGAATGACGTACCCGAACGGCCTCGCCATTAGCGCCGATCGGAGTCACCTCGTGGTGGCG
CTGACGGGGCCGTGCAAGCTGGTGAGGCACTGGATCGAGGGCCCCAAGGCCGGTACGTCG
GAGCCGTTCGCCGAGCTGCCGGGCTACCCGGACAACGTGAGGCCCGATGGGAAGGGAGGC
TACTGGGTGGCGCTGCACCGCGAGAAGACCGAGACGCCGTATGGCTCGGACACCCACCTC
CTCGCCGTAAGGATCGGTCGCAAGGGGAAGATCTTGCAGGAGTTGAGGGGGCCGAAGAAC
GTCAGGCCAACGGAGGTGATTGAGAGAGGCGGCGGCAAGCTTTATTTGGGTTCGGTGGAA
TTGGGTCATGTGGCTGTTGTTAAAGCTACTTAG

Peptide Sequence

PEP ID

Os07t0543600-00
PEP Infomation

pep chromosome:IRGSP-1.0:7:21518901:21519967:-1 gene:Os07g0543600 transcript:Os07t0543600-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Six-bladed beta-propeller, TolB-like domain containing protein. (Os07t0543600-00)
Sequence

MGAVLGTGRVGTLTRVALTIVVFLLLLPSHALAAAVAKDTSATLVETLPLPTTLVGPESV
AFDKFGDGPYSGVSDGRILRWDGADKGWTTYSHAPGYNVAKCMAPKLHPAELTESKCGRP
LGLRFHNTSGNLYIADAYKGLMRVGPRGGEATVLATEADGVPFKFTNGVDVNQVTGEVYF
TDSSTRFQRSQHEMVTATGDSTGRLMKYDPTTGYLDVLQSGMTYPNGLAISADRSHLVVA
LTGPCKLVRHWIEGPKAGTSEPFAELPGYPDNVRPDGKGGYWVALHREKTETPYGSDTHL
LAVRIGRKGKILQELRGPKNVRPTEVIERGGGKLYLGSVELGHVAVVKAT

Transcript Sequence

Transcript ID

Os07t0543600-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:21518901:21519967:-1 gene:Os07g0543600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Six-bladed beta-propeller, TolB-like domain containing protein. (Os07t0543600-00)
Sequence

GGCGATTCTCATTCATGGGGGCCGTCCTCGGCACCGGGAGGGTGGGGACTCTGACTCGGG
TGGCGCTGACGATCGTCGTCTTCCTGCTGCTGTTGCCGTCGCACGCCCTCGCCGCGGCCG
TCGCGAAGGACACCTCCGCCACACTGGTCGAGACGCTGCCGCTGCCCACGACGCTGGTCG
GCCCAGAGAGCGTCGCGTTCGACAAGTTCGGCGATGGCCCCTACAGCGGCGTCTCCGACG
GCCGCATCCTCCGCTGGGACGGCGCCGACAAAGGCTGGACGACGTACTCCCACGCCCCGG
GGTACAACGTCGCCAAGTGCATGGCTCCCAAGCTCCATCCCGCGGAGCTCACCGAGAGCA
AGTGCGGCCGGCCGCTCGGCCTCCGGTTCCACAACACCTCCGGTAACCTCTACATCGCCG
ACGCGTACAAGGGCCTCATGCGTGTCGGCCCGCGCGGCGGGGAGGCAACGGTGCTCGCCA
CGGAGGCCGACGGCGTGCCGTTCAAGTTCACCAACGGCGTCGACGTCAACCAGGTCACCG
GCGAGGTCTACTTCACCGACAGCAGCACGCGCTTCCAGCGATCCCAGCACGAGATGGTCA
CGGCCACCGGCGACTCCACGGGCCGCCTGATGAAGTACGACCCGACGACGGGCTACCTCG
ACGTGCTCCAGTCCGGAATGACGTACCCGAACGGCCTCGCCATTAGCGCCGATCGGAGTC
ACCTCGTGGTGGCGCTGACGGGGCCGTGCAAGCTGGTGAGGCACTGGATCGAGGGCCCCA
AGGCCGGTACGTCGGAGCCGTTCGCCGAGCTGCCGGGCTACCCGGACAACGTGAGGCCCG
ATGGGAAGGGAGGCTACTGGGTGGCGCTGCACCGCGAGAAGACCGAGACGCCGTATGGCT
CGGACACCCACCTCCTCGCCGTAAGGATCGGTCGCAAGGGGAAGATCTTGCAGGAGTTGA
GGGGGCCGAAGAACGTCAGGCCAACGGAGGTGATTGAGAGAGGCGGCGGCAAGCTTTATT
TGGGTTCGGTGGAATTGGGTCATGTGGCTGTTGTTAAAGCTACTTAG