Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0541800-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:21407942:21411687:-1 gene:Os07g0541800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to KI domain interacting kinase 1. (Os07t0541800-01)
Sequence

ATGCGGCGGCGCTCCACGTTCGCCGTTCTCCTCTTCGCGGCCGCCGCGCTCCCGCTCGCC
GCCGGCCAGCCGTGGCAGCTCTGCGGCCGCCGCGGAGGCGGCGGCGGCGGCACGTACACG
GCGAACAGCACCTACGACACCAACCTCCAGAGCCTCATCGCCGCCCTCCAGCAGAACGCC
TCCACGTCGCCCACTCTCTTCGCCGCCGGCGCGCTCGGCGCCGCCCCGGACGCCGTCTAC
GGCCTCATCCTCTGCCGCGGCGACGTGAGCTCCTCCGACTGCTACGACTGCGGCACCAGG
GCCGGCCAGGACGTCGCCCCGGCGTGCAACCGCACCAGGGACGCCATCCTCGTCTACAAC
CAGTGCTACACCCGCTTCTCGGCGGCCGGCGACTTCCTCGCCTCCGCCAACAACTCCGGC
CAGGCGCCGCTCATGAACAGCGACAACGTCACCACCGCCGACGTCGCCGGCTACGACCGC
GCCGTCACGGAACTCCTCAGCGCCACCCTGATGTACGCGGTAGTGAACACCACGAGGCTG
TTCGCCACGGGGCAGCGGGTGGGCGCCGACCCGGGGTTCCCGAACATCTACTCGGCGGCG
CAGTGCACGCCGGACCTGTCGCCGGCGCTGTGCCGGAGCTGCCTCGAGGACCTCGTCGCC
AGGTGGTGGAAGACGTTCCCGCGGACCACGGTGGGGGCGAGGATCGTCGGCACGAGGTGC
AGCTTGAGGTCGGAGGTATCCCAGGACAAGTTCTACACCGGAGCCCCGATGCTGAAGCTG
TGGGCCGACGGCCTCTCGCCGGCGGCGGCGGCGGCGTCGCCGGATGCTGCGCCGGGCACT
ACGGGAGTCAAGAATAATTCAGCAAACAAAATTCTGGAAATCGTCTTGCCGATAGTGGCA
GTTGCAATCGTAGCTGCAGTTTCCATCCTCTTGTGGAATATACGCAAGAAGAGAAGACGA
GGGAAAGCAGAGCATTTCACCGGACCTGATGCAGCTGAGGACTTCGAAAGTGTCAAGTCA
ACCCTGCTATCTCTGGCATCACTGCAAGTAGCGACGGATAATTTCAATGAAAGCATGAAA
CTCGGCGAAGGGGGATTCGGTGCTGTTTATAAGGGGCTTCTTTTCAGACAAGACGTAGCA
GTGAAGAGGCTAGCGAAGGGTTCAAACCAAGGGTTGGAAGAGGTGAAAAACGAGCTAGTT
TTGGTGGCCAAACTTCATCACAAGAATCTTGTGCAGCTTGTGGGGTTTTGCCTAGAAGAG
GGAGAGAGGATGCTCGTCTACGAGTACATGCCCAACAAAAGTCTCGACACCTTTCTTTTT
GATGAAGAGAAAAGGAGACAGCTAGATTGGACTACACGATTTAGGATCATTGAAGGCATT
GCTCGGGGCCTTCAATATCTCCATCAGGACTCCCAGAAAAAGATCGTACACCGAGACATG
AAGGCGAGCAACATCTTGCTAGACGCAGACATGAACCCAAAGATTGGGGACTTTGGACTT
GCTAGGCTCTTCGGACAAGACCAGACTCGAGAGATTACAAACCGCATCGTTGGGACATTT
GGGTACATGTCTCCTGAGTACGTGACGCATGGGCAGTACTCCACGAAATCAGATGTGTTC
AGCTTCGGCATTCTCGTCATAGAGATCGTGACGGGCCGGAGAAGGAACAACGGGCCCTAT
TTCTTTGAGCCAAACGAAGATATAATAAGCATAGTATGGAGGCACTGGGCAGAGGGAAAC
ATTAAGGAGATCATAGATCACTCCTTGGGAAGAAACTACCCTGAAGGCGAGGTGCTAAAA
TGTGTTAACATTGGTCTCCTGTGTGTCCAGCAGAACCCTATAGATCGTCCAACAATGGCC
GATGTCATGGTTTTACTTAATAGCGATGCTACTAGCACTCTGCCGGCCCCTGTAGTTCAT
ATTCCAGTAGCATCTTTCTCCGATGGAAGCTCTGGTTATTCTCAAACCGTGACACAATTG
TCTCCCAGGTAG

Peptide Sequence

PEP ID

Os07t0541800-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:21407942:21411687:-1 gene:Os07g0541800 transcript:Os07t0541800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to KI domain interacting kinase 1. (Os07t0541800-01)
Sequence

MRRRSTFAVLLFAAAALPLAAGQPWQLCGRRGGGGGGTYTANSTYDTNLQSLIAALQQNA
STSPTLFAAGALGAAPDAVYGLILCRGDVSSSDCYDCGTRAGQDVAPACNRTRDAILVYN
QCYTRFSAAGDFLASANNSGQAPLMNSDNVTTADVAGYDRAVTELLSATLMYAVVNTTRL
FATGQRVGADPGFPNIYSAAQCTPDLSPALCRSCLEDLVARWWKTFPRTTVGARIVGTRC
SLRSEVSQDKFYTGAPMLKLWADGLSPAAAAASPDAAPGTTGVKNNSANKILEIVLPIVA
VAIVAAVSILLWNIRKKRRRGKAEHFTGPDAAEDFESVKSTLLSLASLQVATDNFNESMK
LGEGGFGAVYKGLLFRQDVAVKRLAKGSNQGLEEVKNELVLVAKLHHKNLVQLVGFCLEE
GERMLVYEYMPNKSLDTFLFDEEKRRQLDWTTRFRIIEGIARGLQYLHQDSQKKIVHRDM
KASNILLDADMNPKIGDFGLARLFGQDQTREITNRIVGTFGYMSPEYVTHGQYSTKSDVF
SFGILVIEIVTGRRRNNGPYFFEPNEDIISIVWRHWAEGNIKEIIDHSLGRNYPEGEVLK
CVNIGLLCVQQNPIDRPTMADVMVLLNSDATSTLPAPVVHIPVASFSDGSSGYSQTVTQL
SPR

Transcript Sequence

Transcript ID

Os07t0541800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:21407942:21411687:-1 gene:Os07g0541800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to KI domain interacting kinase 1. (Os07t0541800-01)
Sequence

GACTGTGACAGCTGCGTCCACGGGCGCCATGCGGCGGCGCTCCACGTTCGCCGTTCTCCT
CTTCGCGGCCGCCGCGCTCCCGCTCGCCGCCGGCCAGCCGTGGCAGCTCTGCGGCCGCCG
CGGAGGCGGCGGCGGCGGCACGTACACGGCGAACAGCACCTACGACACCAACCTCCAGAG
CCTCATCGCCGCCCTCCAGCAGAACGCCTCCACGTCGCCCACTCTCTTCGCCGCCGGCGC
GCTCGGCGCCGCCCCGGACGCCGTCTACGGCCTCATCCTCTGCCGCGGCGACGTGAGCTC
CTCCGACTGCTACGACTGCGGCACCAGGGCCGGCCAGGACGTCGCCCCGGCGTGCAACCG
CACCAGGGACGCCATCCTCGTCTACAACCAGTGCTACACCCGCTTCTCGGCGGCCGGCGA
CTTCCTCGCCTCCGCCAACAACTCCGGCCAGGCGCCGCTCATGAACAGCGACAACGTCAC
CACCGCCGACGTCGCCGGCTACGACCGCGCCGTCACGGAACTCCTCAGCGCCACCCTGAT
GTACGCGGTAGTGAACACCACGAGGCTGTTCGCCACGGGGCAGCGGGTGGGCGCCGACCC
GGGGTTCCCGAACATCTACTCGGCGGCGCAGTGCACGCCGGACCTGTCGCCGGCGCTGTG
CCGGAGCTGCCTCGAGGACCTCGTCGCCAGGTGGTGGAAGACGTTCCCGCGGACCACGGT
GGGGGCGAGGATCGTCGGCACGAGGTGCAGCTTGAGGTCGGAGGTATCCCAGGACAAGTT
CTACACCGGAGCCCCGATGCTGAAGCTGTGGGCCGACGGCCTCTCGCCGGCGGCGGCGGC
GGCGTCGCCGGATGCTGCGCCGGGCACTACGGGAGTCAAGAATAATTCAGCAAACAAAAT
TCTGGAAATCGTCTTGCCGATAGTGGCAGTTGCAATCGTAGCTGCAGTTTCCATCCTCTT
GTGGAATATACGCAAGAAGAGAAGACGAGGGAAAGCAGAGCATTTCACCGGACCTGATGC
AGCTGAGGACTTCGAAAGTGTCAAGTCAACCCTGCTATCTCTGGCATCACTGCAAGTAGC
GACGGATAATTTCAATGAAAGCATGAAACTCGGCGAAGGGGGATTCGGTGCTGTTTATAA
GGGGCTTCTTTTCAGACAAGACGTAGCAGTGAAGAGGCTAGCGAAGGGTTCAAACCAAGG
GTTGGAAGAGGTGAAAAACGAGCTAGTTTTGGTGGCCAAACTTCATCACAAGAATCTTGT
GCAGCTTGTGGGGTTTTGCCTAGAAGAGGGAGAGAGGATGCTCGTCTACGAGTACATGCC
CAACAAAAGTCTCGACACCTTTCTTTTTGATGAAGAGAAAAGGAGACAGCTAGATTGGAC
TACACGATTTAGGATCATTGAAGGCATTGCTCGGGGCCTTCAATATCTCCATCAGGACTC
CCAGAAAAAGATCGTACACCGAGACATGAAGGCGAGCAACATCTTGCTAGACGCAGACAT
GAACCCAAAGATTGGGGACTTTGGACTTGCTAGGCTCTTCGGACAAGACCAGACTCGAGA
GATTACAAACCGCATCGTTGGGACATTTGGGTACATGTCTCCTGAGTACGTGACGCATGG
GCAGTACTCCACGAAATCAGATGTGTTCAGCTTCGGCATTCTCGTCATAGAGATCGTGAC
GGGCCGGAGAAGGAACAACGGGCCCTATTTCTTTGAGCCAAACGAAGATATAATAAGCAT
AGTATGGAGGCACTGGGCAGAGGGAAACATTAAGGAGATCATAGATCACTCCTTGGGAAG
AAACTACCCTGAAGGCGAGGTGCTAAAATGTGTTAACATTGGTCTCCTGTGTGTCCAGCA
GAACCCTATAGATCGTCCAACAATGGCCGATGTCATGGTTTTACTTAATAGCGATGCTAC
TAGCACTCTGCCGGCCCCTGTAGTTCATATTCCAGTAGCATCTTTCTCCGATGGAAGCTC
TGGTTATTCTCAAACCGTGACACAATTGTCTCCCAGGTAGCAGGGCCTAAAGCAGAGCTT
GCCATCGCTAGTGTAGTTGGCTTGTTGCTTGTTTTTGTTTCGAGTTGGAACTTGAAACTG
TATATATTGTCATTTTGTGATAAGTGGTCAAGAGCTTGGCCACACGAGCCC