Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0540200-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:21299633:21311307:-1 gene:Os07g0540200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0116M22.12 protein. (Os07t0540200-01)
Sequence

ATGGCCGTCGGCGACGACGCCGCTCCGGCGGCGACCAAGATCTCCATCTCCGGCGCGGCT
CTCGCGGCGCTCCTCCAGCGCTGCGGTATGGCCGACGGCGACTGCGACGGCCTCCTCTCC
GGGCGCGCCTCAACCACCCCGGCTCCGCCCCCTTCCCTCTCCGACTACGACGACCACGCG
CCGGCCCAGTCCGCCCCCGCCATCTCCCTCTCCATCTCCGGCCATTCCTCCCTCTCCCGC
CCCTCCTCCCTCTCCGATCCCCTCGGTCGCTTCCACCCCTCCGCCTCCGCCGCCGCCGCC
GGCCCCGCCTCGATCGGCTTCTTCTCCTCCCGCCGCCGCACCGCCCTCCGCCCCTCCATG
CGCGAGCTCTCCCTCGCCCACTCCCTCTCCAAATCCCTCGCGCTCGCCCACCCCCTCCTC
TTCCTCCTCGTCTCCCCTTCCTCCCCCAACCTCTCTACCCACTCCTACGACCACCGCGCC
TTCCTCCTCATCGGCTCCCGCCTCGTCCCGACCTCGCTCCATGTCGTCAATGTCGGCCCC
GTCTTCCGGGACCAGTACCACTCCTTCGCTCCCGACTCTCCGATGCCGTGGCTGCCGCTT
GCACAGCACTCCTCGTCGTCGTCGGCGGCAGCAGGCGACGCGCACACCATTGGGGAGCAG
AATGCGGTGGATGGGGTGGTGGATGGGTTCGGGCTAGGGAAGCTGCAGGGGATCCTGGGC
TCCGTGGCGGGGCAGGCGGCGGAGATGGATGGCATGTATGCAGGAATGCTCAGGAGGCTG
GAGAAGCTTGCCAGGGAGGTGGAGAAGAGCAATCTCCTTGTGCTTAAGCAGGAAAATCGG
AACCTGCTGTTGAGGTTCAGATATGCAGGGTTGGAATAG

Peptide Sequence

PEP ID

Os07t0540200-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:21299633:21311307:-1 gene:Os07g0540200 transcript:Os07t0540200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0116M22.12 protein. (Os07t0540200-01)
Sequence

MAVGDDAAPAATKISISGAALAALLQRCGMADGDCDGLLSGRASTTPAPPPSLSDYDDHA
PAQSAPAISLSISGHSSLSRPSSLSDPLGRFHPSASAAAAGPASIGFFSSRRRTALRPSM
RELSLAHSLSKSLALAHPLLFLLVSPSSPNLSTHSYDHRAFLLIGSRLVPTSLHVVNVGP
VFRDQYHSFAPDSPMPWLPLAQHSSSSSAAAGDAHTIGEQNAVDGVVDGFGLGKLQGILG
SVAGQAAEMDGMYAGMLRRLEKLAREVEKSNLLVLKQENRNLLLRFRYAGLE

Transcript Sequence

Transcript ID

Os07t0540200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:21299633:21311307:-1 gene:Os07g0540200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0116M22.12 protein. (Os07t0540200-01)
Sequence

CCTCTCGATTCTCAAAGCCACCGCCGATGGCCGTCGGCGACGACGCCGCTCCGGCGGCGA
CCAAGATCTCCATCTCCGGCGCGGCTCTCGCGGCGCTCCTCCAGCGCTGCGGTATGGCCG
ACGGCGACTGCGACGGCCTCCTCTCCGGGCGCGCCTCAACCACCCCGGCTCCGCCCCCTT
CCCTCTCCGACTACGACGACCACGCGCCGGCCCAGTCCGCCCCCGCCATCTCCCTCTCCA
TCTCCGGCCATTCCTCCCTCTCCCGCCCCTCCTCCCTCTCCGATCCCCTCGGTCGCTTCC
ACCCCTCCGCCTCCGCCGCCGCCGCCGGCCCCGCCTCGATCGGCTTCTTCTCCTCCCGCC
GCCGCACCGCCCTCCGCCCCTCCATGCGCGAGCTCTCCCTCGCCCACTCCCTCTCCAAAT
CCCTCGCGCTCGCCCACCCCCTCCTCTTCCTCCTCGTCTCCCCTTCCTCCCCCAACCTCT
CTACCCACTCCTACGACCACCGCGCCTTCCTCCTCATCGGCTCCCGCCTCGTCCCGACCT
CGCTCCATGTCGTCAATGTCGGCCCCGTCTTCCGGGACCAGTACCACTCCTTCGCTCCCG
ACTCTCCGATGCCGTGGCTGCCGCTTGCACAGCACTCCTCGTCGTCGTCGGCGGCAGCAG
GCGACGCGCACACCATTGGGGAGCAGAATGCGGTGGATGGGGTGGTGGATGGGTTCGGGC
TAGGGAAGCTGCAGGGGATCCTGGGCTCCGTGGCGGGGCAGGCGGCGGAGATGGATGGCA
TGTATGCAGGAATGCTCAGGAGGCTGGAGAAGCTTGCCAGGGAGGTGGAGAAGAGCAATC
TCCTTGTGCTTAAGCAGGAAAATCGGAACCTGCTGTTGAGGTTCAGATATGCAGGGTTGG
AATAGCGCCAATGTTTTATCGGTCTTAGCAAGGATGTATTATGCTCTACAGACTACTGGA
GTACAATATATCAGCTTCGCTTAAGCTATCTCTAAAGGTTTGTTAAGACTTAAGAGTCGC
CACGGGATTTGTATCATTGTATGGAAGAAGGCGCATGGTACCGAGGATGAGAACGGGGGA
ACATCATGCGGAAAACTGGTGTGGAAGGGGCGCGTTTGTGTTGTTTGGTATGCGATGGAC
AAGGCTGAGCTGCATCACCATCAAGGCATCAAGACCTGCATTTGTTTTCTTTGTTGTCAT
CATCCTTGCTGGACTCGTCCTTATTTGTTATTCCCACGATGTTATTTGTTCAGTTCTTGC
TATATTGGACAAAGGCTCTTAATGACGATGTTTGGCAGGAGGCTCAGGTGGGCCCACCGA
GACTCGCACAGGTCAAAGTC