Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0539900-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:21280322:21282626:-1 gene:Os07g0539900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Beta-1,3-glucanase-like protein. (Os07t0539900-01)
Sequence	ATGGCGCTCGCTCTCGCTCACCTCATCCTTGCCGCCGCATTGCCGCTGCTCTTCCTCTCA CGTGCAGGTAAACGGTGTAGTTGCAGCTCTGTATCAACGGCAGTGTGGTGCGTTGTTTTT TTTTGTTTTTCTTTGCTTATAATATATCGACGTGTAATTCTTTTGCGTGTTCGCGAAAAA TGTTTTTCTTGCACTGCAGATGGGGGCGAGGTGGGCGTGTGCTACGGGAGGGATGGGAAT AATCTGATAGATCCACCGTCCGTGGTTAGCCTTCTCAAGGCAAAGGGTATCACCATGGTG AGGATCTACGACGCCGACCCGACCGTGCTAAACGCGCTGGCCAACCAAAACATCAAGGTG ATGGTGGCGATGTCCAATAGAGATCTAGTAGCTGGCTCCGCCAAGGATTTCAATAGTGCG CTCAGTTGGGTGAAAAACTACGTGTTGCCGTACTACCGTTCCTCACAAATTAACGGCGTG GCCGTGGGGAACGAGGTGTTTCAGCAAGCACCTGACCTGACCTCACAGCTGGTATCGGCC ATGAGGAATGTGCAGGCGGCGCTGGCGAGGCTGGGCCTCGCCGACGCAATAAAGGTATCA ACACCCATTAGTTTTGATTCAGTCAAGGTGTCATTCCCGCCATCCGCAGGTGTGTTCCAA GATAACATCGCCCAGTCGGTGATGAGTCCCATGATCGACTTCTTGCAACAAACCAACTCC TATCTCATGGTTAATTTCTACCCATATATTGCCTGGGCTAATTCTAATGGCCAAATCTCT CGTGATTATGCTGTATTTGGCCCCAACGCCTCTCCTGTGGTCGATCAAGCAAGTGGCATC ACATACCATAGCCTCTTTGATGCTCAGCTAGATGCTGTTTACTTCGCTATAGACCATGTT TCAGGTGGTAGTGTGAGAGTCTCAATGGCCCAAGCAAGACGGGGGCGCCCGTCTCCAAGG ATACCCGTGAAATGTTCAGAATGTGGGCATCCCTCTGGTGGTCGGCTCCCTCAGTTGTCC ACACTAGATGATGTTCAAGTAGACGTGGCTACAAAAGCCAACGCCCAAGCTTTTAACAAT GGTCTTATCAGTCGTGCACTATTCGGAGCCACCGGTATGCCTGATGTCTCCGTATACATC TTTGCTCTTTTCAACGAGAATTTGAAGGGCGGAGCATCTGTAGAACAAAACTTTGGCTTA TTCTACCCAGACGGGACGGAGGTTTACCAAGTTGACTTTCACAATGGTGGTGGTGGTAAT GTTTGCCCTACAAAAGCAAGTTGGTGTGTGGCAAATTCAGCAGTTGGGAGCACCCGGCTG CAAGCAGCGTTGGATTGGGCTTGCAGTAATGGTGCAGATTGTGGTGCTATCCAACCAGGC AAGACATGCTTTGCACCAAACACCTTGGTCGCACACGCATCTTACGCGTTTAATGACTAC TACCAACGTAAGAGCCAAGCTAGCGGTACATGTGACTTCTCTGGTGCTGCTTTTATTGTC TACAAGCCTTCACCAAGTATCTGCGACCCGAACCCAAGCTGGTGCATTGCGAAACCGGAG GTTGGGGACACACGTTTGCAGAATGCGCTAGACTATGCATGCGGTAGCTGCGCAGATTGC AGCGCTATCCAGCGTGGTGCGCAATGCTTTGACCCTGACACCAAGGTAGCGCATGCAACC TATGCATTCAACGACTATTATCAGACTACCGGTCGTGCCAGTGGGTCATGTGATTTTAAC GGCGCTGCTACCATTGTCACACAACAACCAAAGATTGGAAACTGCGTACTCTCACCAAAC AACTCTTGA

Peptide Sequence

PEP ID	Os07t0539900-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:21280322:21282626:-1 gene:Os07g0539900 transcript:Os07t0539900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Beta-1,3-glucanase-like protein. (Os07t0539900-01)
Sequence	MALALAHLILAAALPLLFLSRAGKRCSCSSVSTAVWCVVFFCFSLLIIYRRVILLRVREK CFSCTADGGEVGVCYGRDGNNLIDPPSVVSLLKAKGITMVRIYDADPTVLNALANQNIKV MVAMSNRDLVAGSAKDFNSALSWVKNYVLPYYRSSQINGVAVGNEVFQQAPDLTSQLVSA MRNVQAALARLGLADAIKVSTPISFDSVKVSFPPSAGVFQDNIAQSVMSPMIDFLQQTNS YLMVNFYPYIAWANSNGQISRDYAVFGPNASPVVDQASGITYHSLFDAQLDAVYFAIDHV SGGSVRVSMAQARRGRPSPRIPVKCSECGHPSGGRLPQLSTLDDVQVDVATKANAQAFNN GLISRALFGATGMPDVSVYIFALFNENLKGGASVEQNFGLFYPDGTEVYQVDFHNGGGGN VCPTKASWCVANSAVGSTRLQAALDWACSNGADCGAIQPGKTCFAPNTLVAHASYAFNDY YQRKSQASGTCDFSGAAFIVYKPSPSICDPNPSWCIAKPEVGDTRLQNALDYACGSCADC SAIQRGAQCFDPDTKVAHATYAFNDYYQTTGRASGSCDFNGAATIVTQQPKIGNCVLSPN NS

Transcript Sequence

Transcript ID	Os07t0539900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:21280322:21282626:-1 gene:Os07g0539900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Beta-1,3-glucanase-like protein. (Os07t0539900-01)
Sequence	GTCATATTTTACCCTGCTTTCCTCTGCCACTCGATCGCCACGGCTCGCAGGACAAGAGGC CATATGGCGCTCGCTCTCGCTCACCTCATCCTTGCCGCCGCATTGCCGCTGCTCTTCCTC TCACGTGCAGGTAAACGGTGTAGTTGCAGCTCTGTATCAACGGCAGTGTGGTGCGTTGTT TTTTTTTGTTTTTCTTTGCTTATAATATATCGACGTGTAATTCTTTTGCGTGTTCGCGAA AAATGTTTTTCTTGCACTGCAGATGGGGGCGAGGTGGGCGTGTGCTACGGGAGGGATGGG AATAATCTGATAGATCCACCGTCCGTGGTTAGCCTTCTCAAGGCAAAGGGTATCACCATG GTGAGGATCTACGACGCCGACCCGACCGTGCTAAACGCGCTGGCCAACCAAAACATCAAG GTGATGGTGGCGATGTCCAATAGAGATCTAGTAGCTGGCTCCGCCAAGGATTTCAATAGT GCGCTCAGTTGGGTGAAAAACTACGTGTTGCCGTACTACCGTTCCTCACAAATTAACGGC GTGGCCGTGGGGAACGAGGTGTTTCAGCAAGCACCTGACCTGACCTCACAGCTGGTATCG GCCATGAGGAATGTGCAGGCGGCGCTGGCGAGGCTGGGCCTCGCCGACGCAATAAAGGTA TCAACACCCATTAGTTTTGATTCAGTCAAGGTGTCATTCCCGCCATCCGCAGGTGTGTTC CAAGATAACATCGCCCAGTCGGTGATGAGTCCCATGATCGACTTCTTGCAACAAACCAAC TCCTATCTCATGGTTAATTTCTACCCATATATTGCCTGGGCTAATTCTAATGGCCAAATC TCTCGTGATTATGCTGTATTTGGCCCCAACGCCTCTCCTGTGGTCGATCAAGCAAGTGGC ATCACATACCATAGCCTCTTTGATGCTCAGCTAGATGCTGTTTACTTCGCTATAGACCAT GTTTCAGGTGGTAGTGTGAGAGTCTCAATGGCCCAAGCAAGACGGGGGCGCCCGTCTCCA AGGATACCCGTGAAATGTTCAGAATGTGGGCATCCCTCTGGTGGTCGGCTCCCTCAGTTG TCCACACTAGATGATGTTCAAGTAGACGTGGCTACAAAAGCCAACGCCCAAGCTTTTAAC AATGGTCTTATCAGTCGTGCACTATTCGGAGCCACCGGTATGCCTGATGTCTCCGTATAC ATCTTTGCTCTTTTCAACGAGAATTTGAAGGGCGGAGCATCTGTAGAACAAAACTTTGGC TTATTCTACCCAGACGGGACGGAGGTTTACCAAGTTGACTTTCACAATGGTGGTGGTGGT AATGTTTGCCCTACAAAAGCAAGTTGGTGTGTGGCAAATTCAGCAGTTGGGAGCACCCGG CTGCAAGCAGCGTTGGATTGGGCTTGCAGTAATGGTGCAGATTGTGGTGCTATCCAACCA GGCAAGACATGCTTTGCACCAAACACCTTGGTCGCACACGCATCTTACGCGTTTAATGAC TACTACCAACGTAAGAGCCAAGCTAGCGGTACATGTGACTTCTCTGGTGCTGCTTTTATT GTCTACAAGCCTTCACCAAGTATCTGCGACCCGAACCCAAGCTGGTGCATTGCGAAACCG GAGGTTGGGGACACACGTTTGCAGAATGCGCTAGACTATGCATGCGGTAGCTGCGCAGAT TGCAGCGCTATCCAGCGTGGTGCGCAATGCTTTGACCCTGACACCAAGGTAGCGCATGCA ACCTATGCATTCAACGACTATTATCAGACTACCGGTCGTGCCAGTGGGTCATGTGATTTT AACGGCGCTGCTACCATTGTCACACAACAACCAAAGATTGGAAACTGCGTACTCTCACCA AACAACTCTTGAATGTACAGAAGACTCGGCAGTAAGAGGATGGGATTGAAGAATAAGTCC ATATTCTCTAAGAAAGGAATAAGTCCATATTATGGTCAAATAAAAATAAGGACGACATTG TATGTATTCCGGTTTGGAATTTTAAGTAAGTAATAAATGTATCGTTCACTCGTGTTGAAA TGAATAAGAAACTTAATTACTC