Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0539700-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:21265863:21269388:1 gene:Os07g0539700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os07t0539700-01)
Sequence

ATGCTCGCCGGCTATGTCTACGGTGGTGGCATCCTCGCCGTCGTTCTCGCCGTCGTCGTC
GTCACGCTGCCGCTGCCGGCCACGGCGGCTCCGGTCGCTGAATGCGACCCCGGTGTCGCC
AACACGAACGTGACCGGCAACAGCGCTTTCGACAGGAACCTGGGCCTCCTCGCCGCGGCG
CTCGCCGCCAACGCCTCTGCCGCCGGCGCCCCGGGCTTCGCCGTCCGCACCGCCGGCGCG
GCGCCCGACCAGGTCTACGCGCTGGCGCTCTGCCGCGGCGACGTGAACGCCTCGGCTTGC
CGCGCGTGCGTCGCGGCGGCGTTCGTCGACGCGAAGGGCGTCTGCCCCGGCGGCATCTCC
CTGTACGAGGACGCCTGCTTGATCCGCTTCACCGGCCAGAGCTTCATGGATTTCCTCAGG
CCGGACAAGTGGCAGGTCTCCCAGATGACTTGGATTCCCGGCCAAGCCTCGGGGAACGTC
AAGGTGCCGGAGGTCGGCTGGTTCAACGCCGCCGTGGCAAAGATCCTCGCCGCCCTGGTC
GAGCACGCCTGGGCCACGACGACGACGACGACGACGGGCAACAACTCGACCACCACCATC
AAGTATTTCGCCACGGGTGAGGAGAGCTTCAACCCCAAGATCTACGGGTTCGCGCAGTGC
GTGCCGGTCCTGACGCCGGAGCAGTGCAAGGAATGCCTTAGGAGCCTCCACGATAATGCG
AAAACGGTGTACATGGGCAACAGCCTCCGGTGGGTTGGTATCTATTCGGTGTGGTGCAGG
CTGATGTATAGCGTGCGGCCGTTCTACGGAGGCCGGGCGACGCTGCAGCTCTCGCCGCCG
CCACCACCGGTCGTCGAGACTCCGGTTGAGGCTGGAGCAGGGAAGAAAAAGAGTGCAGCA
GGAGTCGCTGCAGGCCTGGCTTGTTCAGTTTTGGTACTGTTGATCCTTGCAGTTTTTGCA
TTCGTTCGGTTCAAGAGGAGGACCAAGGCTGTCGAGGCTGACCACCCATTGAAGAAGATA
ACAAGAGCACAATGCATGATTTTTGATCTGCCTACGCTGCAAGAGGCAACTGAGAACTTC
TCGGAGAACAATAAACTGGGAGAAGGTGGTTTTGGTTCAGTATACAAGGGAGTACTCTCA
GATGGACAAGAAGTAGCAGTCAAGAAACTTTTAGGAACAAGTGGGCATGGATTAGATCAG
CTACACAATGAGGTTCTGTTATTGGCAGAGCTTCAGCATAAGAACCTTGTTCGGCTACAT
GGATTTTGCTTGCATCAGGGGGAGACATTACTGGTTTATGAATACATCAAGAACGGGAGC
CTGGACAACTTCCTATTCGATATCAATAGGGGAAATGCATTAAACTGGGAGCAACAATAC
AACATCATTCTTGGAATTGCCAAGGGAATATTGTATCTACACGAGGACTCGAGCTTGAGG
ATCATTCACCGGGACCTAAAATCGAACAACATTTTACTTGGTGAGGATATGGAACCGAAA
ATTGCAGATTTTGGATTGGCAAGGCTGCTAGGAGAAGGCCATACTCATACTAGGACGACT
AGAGTTGTTGGAACATTCGGTTATATGGCACCCGAGTATGCAATAGATGGAAATGTGTCA
ACCAAGATCGATATTTTTAGCTTTGGTGTGTTGGTCCTCGAAATAGTAACGAGGAGAAGG
AACTGCAATTCTGATGATCATGATCTTGTGAATCTCCTTAGTGATGTCTGGAATTGCTGG
ACAAAAGGGACGGTTTCCCAAATGATTGACCAATCGCTTCACGGATATTCTCAAAGCCAA
GCACTGCGATGCATCCACATTGCGCTGTTGTGCGTCCAGTCAGACCCTAACGATAGACCT
CAGATATCATCTGTCATTTTCATGTTGACCCGAGAAAACATGGAGCTTCAGCCACCAGCA
CAACCTGCATTCTTCTTTGGGGGAGGATCAGCTTCCTCTTCTCCTTCATTTGGGCAACGC
AGCTATGTGTATGACCGATGTGGTTTTGATAACATTTCTGTAAACGGTGTTACACTCACT
GAGCCATATCCTAGATGA

Peptide Sequence

PEP ID

Os07t0539700-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:21265863:21269388:1 gene:Os07g0539700 transcript:Os07t0539700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os07t0539700-01)
Sequence

MLAGYVYGGGILAVVLAVVVVTLPLPATAAPVAECDPGVANTNVTGNSAFDRNLGLLAAA
LAANASAAGAPGFAVRTAGAAPDQVYALALCRGDVNASACRACVAAAFVDAKGVCPGGIS
LYEDACLIRFTGQSFMDFLRPDKWQVSQMTWIPGQASGNVKVPEVGWFNAAVAKILAALV
EHAWATTTTTTTGNNSTTTIKYFATGEESFNPKIYGFAQCVPVLTPEQCKECLRSLHDNA
KTVYMGNSLRWVGIYSVWCRLMYSVRPFYGGRATLQLSPPPPPVVETPVEAGAGKKKSAA
GVAAGLACSVLVLLILAVFAFVRFKRRTKAVEADHPLKKITRAQCMIFDLPTLQEATENF
SENNKLGEGGFGSVYKGVLSDGQEVAVKKLLGTSGHGLDQLHNEVLLLAELQHKNLVRLH
GFCLHQGETLLVYEYIKNGSLDNFLFDINRGNALNWEQQYNIILGIAKGILYLHEDSSLR
IIHRDLKSNNILLGEDMEPKIADFGLARLLGEGHTHTRTTRVVGTFGYMAPEYAIDGNVS
TKIDIFSFGVLVLEIVTRRRNCNSDDHDLVNLLSDVWNCWTKGTVSQMIDQSLHGYSQSQ
ALRCIHIALLCVQSDPNDRPQISSVIFMLTRENMELQPPAQPAFFFGGGSASSSPSFGQR
SYVYDRCGFDNISVNGVTLTEPYPR

Transcript Sequence

Transcript ID

Os07t0539700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:21265863:21269388:1 gene:Os07g0539700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os07t0539700-01)
Sequence

GTGGGCGAATTTGCAAACATTCCCGGGCGAGCCGGTCATGTTTGACTCCACACTTGCGCA
CTCAATCCGGCATACGTAGCTATCGGCACAGCGGCGCTAGCTAGCTAGGCCATCTTTAGT
GCAAACCATGGCGCCGTTCGTTAAGGGTAGAAACCTCTCTCTCCCCATCTGCTGCGCCGA
TGCTCGCCGGCTATGTCTACGGTGGTGGCATCCTCGCCGTCGTTCTCGCCGTCGTCGTCG
TCACGCTGCCGCTGCCGGCCACGGCGGCTCCGGTCGCTGAATGCGACCCCGGTGTCGCCA
ACACGAACGTGACCGGCAACAGCGCTTTCGACAGGAACCTGGGCCTCCTCGCCGCGGCGC
TCGCCGCCAACGCCTCTGCCGCCGGCGCCCCGGGCTTCGCCGTCCGCACCGCCGGCGCGG
CGCCCGACCAGGTCTACGCGCTGGCGCTCTGCCGCGGCGACGTGAACGCCTCGGCTTGCC
GCGCGTGCGTCGCGGCGGCGTTCGTCGACGCGAAGGGCGTCTGCCCCGGCGGCATCTCCC
TGTACGAGGACGCCTGCTTGATCCGCTTCACCGGCCAGAGCTTCATGGATTTCCTCAGGC
CGGACAAGTGGCAGGTCTCCCAGATGACTTGGATTCCCGGCCAAGCCTCGGGGAACGTCA
AGGTGCCGGAGGTCGGCTGGTTCAACGCCGCCGTGGCAAAGATCCTCGCCGCCCTGGTCG
AGCACGCCTGGGCCACGACGACGACGACGACGACGGGCAACAACTCGACCACCACCATCA
AGTATTTCGCCACGGGTGAGGAGAGCTTCAACCCCAAGATCTACGGGTTCGCGCAGTGCG
TGCCGGTCCTGACGCCGGAGCAGTGCAAGGAATGCCTTAGGAGCCTCCACGATAATGCGA
AAACGGTGTACATGGGCAACAGCCTCCGGTGGGTTGGTATCTATTCGGTGTGGTGCAGGC
TGATGTATAGCGTGCGGCCGTTCTACGGAGGCCGGGCGACGCTGCAGCTCTCGCCGCCGC
CACCACCGGTCGTCGAGACTCCGGTTGAGGCTGGAGCAGGGAAGAAAAAGAGTGCAGCAG
GAGTCGCTGCAGGCCTGGCTTGTTCAGTTTTGGTACTGTTGATCCTTGCAGTTTTTGCAT
TCGTTCGGTTCAAGAGGAGGACCAAGGCTGTCGAGGCTGACCACCCATTGAAGAAGATAA
CAAGAGCACAATGCATGATTTTTGATCTGCCTACGCTGCAAGAGGCAACTGAGAACTTCT
CGGAGAACAATAAACTGGGAGAAGGTGGTTTTGGTTCAGTATACAAGGGAGTACTCTCAG
ATGGACAAGAAGTAGCAGTCAAGAAACTTTTAGGAACAAGTGGGCATGGATTAGATCAGC
TACACAATGAGGTTCTGTTATTGGCAGAGCTTCAGCATAAGAACCTTGTTCGGCTACATG
GATTTTGCTTGCATCAGGGGGAGACATTACTGGTTTATGAATACATCAAGAACGGGAGCC
TGGACAACTTCCTATTCGATATCAATAGGGGAAATGCATTAAACTGGGAGCAACAATACA
ACATCATTCTTGGAATTGCCAAGGGAATATTGTATCTACACGAGGACTCGAGCTTGAGGA
TCATTCACCGGGACCTAAAATCGAACAACATTTTACTTGGTGAGGATATGGAACCGAAAA
TTGCAGATTTTGGATTGGCAAGGCTGCTAGGAGAAGGCCATACTCATACTAGGACGACTA
GAGTTGTTGGAACATTCGGTTATATGGCACCCGAGTATGCAATAGATGGAAATGTGTCAA
CCAAGATCGATATTTTTAGCTTTGGTGTGTTGGTCCTCGAAATAGTAACGAGGAGAAGGA
ACTGCAATTCTGATGATCATGATCTTGTGAATCTCCTTAGTGATGTCTGGAATTGCTGGA
CAAAAGGGACGGTTTCCCAAATGATTGACCAATCGCTTCACGGATATTCTCAAAGCCAAG
CACTGCGATGCATCCACATTGCGCTGTTGTGCGTCCAGTCAGACCCTAACGATAGACCTC
AGATATCATCTGTCATTTTCATGTTGACCCGAGAAAACATGGAGCTTCAGCCACCAGCAC
AACCTGCATTCTTCTTTGGGGGAGGATCAGCTTCCTCTTCTCCTTCATTTGGGCAACGCA
GCTATGTGTATGACCGATGTGGTTTTGATAACATTTCTGTAAACGGTGTTACACTCACTG
AGCCATATCCTAGATGACTAGTATGTCATACTAGGGCACATTTTTAATGGGTAATAAATC
ATGGAACCTTACCATGTCCATGCAATGATGCAAT