Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0531500-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:20806655:20807495:1 gene:Os07g0531500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os07t0531500-01)
Sequence

ATGCCGCCGTACCGGCTGCCGATGTACCGGGAGAGGCCGGCGGTGAGGTGCATCAACTTC
CTCTGCGCCGTGCTGCTCACCATGGTGCTCGTCGCCGGCATCATCATGTTCGTGCTGTGG
CTCAGCCTCCGGCCGCACCGGCCCAGGTTCTTCCTCGACGACTTCACCATCCCCAACCTC
AACCGGCAGTCCGGCGCCGTGAACCTGCCGGTGAGGTTCACCGTCGACGAGCGCAACCCC
AACCAGAAGATCGGCATCCACTACGGCACCATCTTCGGGTCGGTGTACTACAACGACCTG
CTCGTCGCGTCGGGGCCGGTGGTCCAGCCATTCTACCAGCAGCCCAAGGGCGACACGCCG
CTGGCCGGCGAGCTCACGGCGTCCGGGCCGACGCCCGGCGACCCGGCGTGGCAGCGGTTC
GCCGGCGACGCGGCGGCCGGCAGCGTCGCGCTCCGGCTGCTGCTCAACTCGACGGTGAGG
TTCCAGGTGCAGATGTGGGACACCAGGGAGCACCACATGAAGGTGGACTGCGAGTTCGGC
CTGCGTGGCGACGGCACGCTCCAGCAGGGGGACAAGAACAAGCAGTGTACGCTCTACTTC
TAG

Peptide Sequence

PEP ID

Os07t0531500-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:20806655:20807495:1 gene:Os07g0531500 transcript:Os07t0531500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os07t0531500-01)
Sequence

MPPYRLPMYRERPAVRCINFLCAVLLTMVLVAGIIMFVLWLSLRPHRPRFFLDDFTIPNL
NRQSGAVNLPVRFTVDERNPNQKIGIHYGTIFGSVYYNDLLVASGPVVQPFYQQPKGDTP
LAGELTASGPTPGDPAWQRFAGDAAAGSVALRLLLNSTVRFQVQMWDTREHHMKVDCEFG
LRGDGTLQQGDKNKQCTLYF

Transcript Sequence

Transcript ID

Os07t0531500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:20806655:20807495:1 gene:Os07g0531500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os07t0531500-01)
Sequence

ATTGTCCAAAGCCAAGAGCAGCAGCAGAGGGTAGCTAGCTCGAACAGCACACTACTGAAG
CTGATCAGAAGGAAGCAGCAAGGCAAGCAGGTTTAGTTTAAGCAGCAGCTCGCCGCCGGC
AATAATGCCGCCGTACCGGCTGCCGATGTACCGGGAGAGGCCGGCGGTGAGGTGCATCAA
CTTCCTCTGCGCCGTGCTGCTCACCATGGTGCTCGTCGCCGGCATCATCATGTTCGTGCT
GTGGCTCAGCCTCCGGCCGCACCGGCCCAGGTTCTTCCTCGACGACTTCACCATCCCCAA
CCTCAACCGGCAGTCCGGCGCCGTGAACCTGCCGGTGAGGTTCACCGTCGACGAGCGCAA
CCCCAACCAGAAGATCGGCATCCACTACGGCACCATCTTCGGGTCGGTGTACTACAACGA
CCTGCTCGTCGCGTCGGGGCCGGTGGTCCAGCCATTCTACCAGCAGCCCAAGGGCGACAC
GCCGCTGGCCGGCGAGCTCACGGCGTCCGGGCCGACGCCCGGCGACCCGGCGTGGCAGCG
GTTCGCCGGCGACGCGGCGGCCGGCAGCGTCGCGCTCCGGCTGCTGCTCAACTCGACGGT
GAGGTTCCAGGTGCAGATGTGGGACACCAGGGAGCACCACATGAAGGTGGACTGCGAGTT
CGGCCTGCGTGGCGACGGCACGCTCCAGCAGGGGGACAAGAACAAGCAGTGTACGCTCTA
CTTCTAGGGTGGATGGACCGTATCTTAATTTTTCCTCGATTTTTCTTTGTGAGTGGTTTT
ATATTTTTCATCGTTTGGATTTTCGAGTGATATTGATTATTACTTTTTACCCCTTGTTGA
C