Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0525400-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:20410554:20418589:1 gene:Os07g0525400 gene_biotype:protein_coding transcript_biotype:protein_coding description:RabGAP/TBC domain containing protein. (Os07t0525400-01)
Sequence

ATGATCAAGTGGGGCATCGGTAGCAGCGGGACGCCGGCGGATTCGTATTATGAGGTCCGC
TCGGATTGCACGGATGACGTGCCCAAGAGCAAGTTCAAGATCAAGGCAGGAAAAACATTG
AGTGTCCGGAAATGGCAGGCTGCATTTAGCACTGATGGTTGTCTTGATATTGCCTCAGTC
CTAAGCCGGATACAAAAAGGAGGTGTGCATCCAACAGTAAGGGGAGAGGTTTGGGAGTTT
TTACTTGGATGTTTTGATCCCAGGAGTACCTTTGATGAGAGGGAGGAAATCAGGCAAATA
AGAAGGCTACAATATGCTAGATGGAAGGAAGACTGCCGAGAGATGGATTCTCATGTTGGT
AGCGGGAAAGTGATCACAGCACCATTAATCACTGAGGATGGTAGACCCATCAAAGACCCT
TTGGTTTTACTCGAGGCTACTTCATCCGAAAACACATCAGACGGTACTTCAACAAGCAGC
ACAAATGGAAATGAAATAGATGAATCTGCAAGCCGTATTACAGATAAGCTCATTATTGAC
TGGAAGCTTACTTTGCATCAAATTGGACTTGATGTGCTACGTACGGACCGCACTATGGTA
TTTTATGAGAACAAAGAAAATCTTTCCAAGTTGTGGGATATTCTAGCTGTGTATGCTTGG
ATTGATAAAGATGTTGGTTACTGTCAAGGAATGAGCGATTTATGCTCGCCAATGATCGTG
CTACTCAAGGATGAAGCAGATGCCTTTTGGTGCTTTGAGAAATTGATGCGTAGATTGAGA
GGAAATTTCAAATGCACGGATCAATCTGTGGGTGTGGCTAATCAACTTCAGTACCTTGCA
TCTATTATTCAGGTGCTTGATCCAAAGCTACATGACCACCTAGAAATACTTGGTGGAGGT
GATTATCTTTTTGCATTTCGTATGTTCATGGTGCTATTTCGACGCGAAGTGTCATTTGGG
GACTCCCTGTATCTCTGGGAGATGATGTGGGCTCTGGAATATGATCCCGACATCTTCTTT
GCCGCTTGTGAAGATGCAAGTGCTCACAAAAGTAAAGTATCTAAATCAAAATTGAGAGGG
GTACGCCATTTTGGCAAGTGGGACAAAGACAAAGATAAAGAGAATTCGAAAAATGGATCT
GAGGATACTGATGGTCCAGTTCCAATTTCAGTTTTCATGGTTGCAAGTGTTCTCAAGGAA
AAAAGAGAAAAGCTATTACAGGAAGCTAGAGGACTGGATGATCTTATTAGGATTCTGAAT
GATGTAAATGGAAATTTAGATGCCAAAAAAGCTTGTGCTGGTGCTTTGAAGCTTCATAAG
AAATACCTGAAAAAAGTACAGACAAAGAAACCCTAA

Peptide Sequence

PEP ID

Os07t0525400-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:20410554:20418589:1 gene:Os07g0525400 transcript:Os07t0525400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:RabGAP/TBC domain containing protein. (Os07t0525400-01)
Sequence

MIKWGIGSSGTPADSYYEVRSDCTDDVPKSKFKIKAGKTLSVRKWQAAFSTDGCLDIASV
LSRIQKGGVHPTVRGEVWEFLLGCFDPRSTFDEREEIRQIRRLQYARWKEDCREMDSHVG
SGKVITAPLITEDGRPIKDPLVLLEATSSENTSDGTSTSSTNGNEIDESASRITDKLIID
WKLTLHQIGLDVLRTDRTMVFYENKENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIV
LLKDEADAFWCFEKLMRRLRGNFKCTDQSVGVANQLQYLASIIQVLDPKLHDHLEILGGG
DYLFAFRMFMVLFRREVSFGDSLYLWEMMWALEYDPDIFFAACEDASAHKSKVSKSKLRG
VRHFGKWDKDKDKENSKNGSEDTDGPVPISVFMVASVLKEKREKLLQEARGLDDLIRILN
DVNGNLDAKKACAGALKLHKKYLKKVQTKKP

Transcript Sequence

Transcript ID

Os07t0525400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:20410554:20418589:1 gene:Os07g0525400 gene_biotype:protein_coding transcript_biotype:protein_coding description:RabGAP/TBC domain containing protein. (Os07t0525400-01)
Sequence

GCGTCCCCCCTTTACCCTTCCCCTGGCTCCTCCTCCTGCAATTCCACTTCCATCCGTCGG
CACAGGAGGAAGGTTGCTAAGGGGGGATCGGCTCCATTCCTCATTCTTCATTCCATTTGC
GCGCGTGATTCGGGTTTCTTTTCCTTCTTGTCACCTGTTTCTTGGTCGGTTTCCCGCCTT
CTCAGAGGTCGGTCGATTGGATTTGGAGCCCGGGGCCCAGCCTTGCCTCAACGTCTGTGT
TGTCGTGTTCTTATTGGATTCTTGACCGGATTGGATTTTGGCGGTTCCAATTTTTGTTGG
TTTGCTCCGATTCTTGGTTGATTTGGTCGGAAGATGATCAAGTGGGGCATCGGTAGCAGC
GGGACGCCGGCGGATTCGTATTATGAGGTCCGCTCGGATTGCACGGATGACGTGCCCAAG
AGCAAGTTCAAGATCAAGGCAGGAAAAACATTGAGTGTCCGGAAATGGCAGGCTGCATTT
AGCACTGATGGTTGTCTTGATATTGCCTCAGTCCTAAGCCGGATACAAAAAGGAGGTGTG
CATCCAACAGTAAGGGGAGAGGTTTGGGAGTTTTTACTTGGATGTTTTGATCCCAGGAGT
ACCTTTGATGAGAGGGAGGAAATCAGGCAAATAAGAAGGCTACAATATGCTAGATGGAAG
GAAGACTGCCGAGAGATGGATTCTCATGTTGGTAGCGGGAAAGTGATCACAGCACCATTA
ATCACTGAGGATGGTAGACCCATCAAAGACCCTTTGGTTTTACTCGAGGCTACTTCATCC
GAAAACACATCAGACGGTACTTCAACAAGCAGCACAAATGGAAATGAAATAGATGAATCT
GCAAGCCGTATTACAGATAAGCTCATTATTGACTGGAAGCTTACTTTGCATCAAATTGGA
CTTGATGTGCTACGTACGGACCGCACTATGGTATTTTATGAGAACAAAGAAAATCTTTCC
AAGTTGTGGGATATTCTAGCTGTGTATGCTTGGATTGATAAAGATGTTGGTTACTGTCAA
GGAATGAGCGATTTATGCTCGCCAATGATCGTGCTACTCAAGGATGAAGCAGATGCCTTT
TGGTGCTTTGAGAAATTGATGCGTAGATTGAGAGGAAATTTCAAATGCACGGATCAATCT
GTGGGTGTGGCTAATCAACTTCAGTACCTTGCATCTATTATTCAGGTGCTTGATCCAAAG
CTACATGACCACCTAGAAATACTTGGTGGAGGTGATTATCTTTTTGCATTTCGTATGTTC
ATGGTGCTATTTCGACGCGAAGTGTCATTTGGGGACTCCCTGTATCTCTGGGAGATGATG
TGGGCTCTGGAATATGATCCCGACATCTTCTTTGCCGCTTGTGAAGATGCAAGTGCTCAC
AAAAGTAAAGTATCTAAATCAAAATTGAGAGGGGTACGCCATTTTGGCAAGTGGGACAAA
GACAAAGATAAAGAGAATTCGAAAAATGGATCTGAGGATACTGATGGTCCAGTTCCAATT
TCAGTTTTCATGGTTGCAAGTGTTCTCAAGGAAAAAAGAGAAAAGCTATTACAGGAAGCT
AGAGGACTGGATGATCTTATTAGGATTCTGAATGATGTAAATGGAAATTTAGATGCCAAA
AAAGCTTGTGCTGGTGCTTTGAAGCTTCATAAGAAATACCTGAAAAAAGTACAGACAAAG
AAACCCTAAACTGTAACATATCTTCTCACTGGGTGATTCTTTTCCATGTGGACATAGCAA
ACTATACTTGACAGAATGCTCGCCATCTAAAATCGGCCTGGAATATACTGGTTTGTGAAG
TTACCAGCTAGTCGGTCTGAGTACAGGAAGAATGCGACCCTTGTATGTAAAGATCTCGAA
TTCTTTCTACTCCATAATTTTGCTGCTTGTAAAGACAGAAGGTGGTGTGGGTAGCATGCC
TCTGATACACAACAATTTCAATACAAGTTGAAATGAGCTGTTTGTGGTCTGTGTGAATAC
TGTAGCCACACACAGCTCTGTTTTGAGAACATTTTTACCCTTTAGCTGGAGATATGAAAG
ACATCACAATTTTGAATTTATTCCGAATTGGAAGTGCCAAAAGAAGGTTGAGATTGCTCC