Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0524200-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:20348669:20349531:1 gene:Os07g0524200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os07t0524200-01)
Sequence

ATGACGGAGGGGAAGAAGACGAAGACGAAGCCGCACAGGAGGGCGTGCTGCCTGCTGCTC
GCCGCCGTCGCCGTCCTCGGCGCGCTGGTGCTGGCGCTCTACCTCGTCTACCGCCCCCGT
CCGCCGCGCGTGGTGGCCACGCCGGTGGACGTGACGATCGAGCTCTTCAGCCTCGTGCCG
CCGAAGCTGAAGGCCGCCGTCGGCGTGCACGTGGTGGTGACCAACCCGAGCAACTCGGCG
TACCGGTACGGCGAGTCGCTGGCGTCGGTGACGTACCACGGCGAGCGCGTGGGCGCGTCG
GTGGTGCCCCGCGGCGAGGTGGAGGCGAGGTCGACGCGGCTGATCGAGCCGGCGACGGCG
GTGGACGTGGTGCGCGTCGCCGAGAGCCCGCACTTCGCGCACGACGCGGCCGCCGGCGTG
CTGCCGTTCGTGGCGGTGACCACCGTGGAGGGGAAGGCGCTGGTGCTCCGGTCGTTCGAG
GTGAGCGTGTCCGTGGAGGTGGTGTGCTTCGTGCAGATGTACGTGTTCCACGGCGAGAGC
ACCTCGCGCTGCGTCTCCACCGTCCGCACGGCCACGGAAACCGTCTCGTCGGAGCCATCC
GGCGCCCGTGGCGCACGTAACTCTGTTCCTAGCTATGACTAG

Peptide Sequence

PEP ID

Os07t0524200-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:20348669:20349531:1 gene:Os07g0524200 transcript:Os07t0524200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os07t0524200-01)
Sequence

MTEGKKTKTKPHRRACCLLLAAVAVLGALVLALYLVYRPRPPRVVATPVDVTIELFSLVP
PKLKAAVGVHVVVTNPSNSAYRYGESLASVTYHGERVGASVVPRGEVEARSTRLIEPATA
VDVVRVAESPHFAHDAAAGVLPFVAVTTVEGKALVLRSFEVSVSVEVVCFVQMYVFHGES
TSRCVSTVRTATETVSSEPSGARGARNSVPSYD

Transcript Sequence

Transcript ID

Os07t0524200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:20348669:20349531:1 gene:Os07g0524200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os07t0524200-01)
Sequence

GATCACGAGTTCTTCGAGCTGATCAGCAAGATCATCATCATCAGCTAGAGCTAGCTAAAG
TAGCTTAATTAGCATCGATCGATGACGGAGGGGAAGAAGACGAAGACGAAGCCGCACAGG
AGGGCGTGCTGCCTGCTGCTCGCCGCCGTCGCCGTCCTCGGCGCGCTGGTGCTGGCGCTC
TACCTCGTCTACCGCCCCCGTCCGCCGCGCGTGGTGGCCACGCCGGTGGACGTGACGATC
GAGCTCTTCAGCCTCGTGCCGCCGAAGCTGAAGGCCGCCGTCGGCGTGCACGTGGTGGTG
ACCAACCCGAGCAACTCGGCGTACCGGTACGGCGAGTCGCTGGCGTCGGTGACGTACCAC
GGCGAGCGCGTGGGCGCGTCGGTGGTGCCCCGCGGCGAGGTGGAGGCGAGGTCGACGCGG
CTGATCGAGCCGGCGACGGCGGTGGACGTGGTGCGCGTCGCCGAGAGCCCGCACTTCGCG
CACGACGCGGCCGCCGGCGTGCTGCCGTTCGTGGCGGTGACCACCGTGGAGGGGAAGGCG
CTGGTGCTCCGGTCGTTCGAGGTGAGCGTGTCCGTGGAGGTGGTGTGCTTCGTGCAGATG
TACGTGTTCCACGGCGAGAGCACCTCGCGCTGCGTCTCCACCGTCCGCACGGCCACGGAA
ACCGTCTCGTCGGAGCCATCCGGCGCCCGTGGCGCACGTAACTCTGTTCCTAGCTATGAC
TAGCTAAACTACACACGTACTACGTAGTATTACACTACACTACACATGTCACAAACTTTA
TTATTTATTGGAGTACTTTTTACAGTGTTTCATTTTGTAATTTTTGAGTGTATATATATA
CATATATGCATTCCTTCAGTTCT