Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0520400-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:20087170:20093360:-1 gene:Os07g0520400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Potyviral helper component protease-interacting protein 2. (Os07t0520400-01)
Sequence	ATGGCGACGGCGGTGTCGAAGTCGGCGGCTAAGCCGCACCCCAGGTCGCCCACCACCGCG CAGCCGCCGAACAACGGCTCCGCGGCGGGGGCGGCGGCGGGGGGCGGGGGCGGTGGAGTG GGTATGGGGCCCGCGGGGGCGACGCCGTCGAAGAACGCGGCGATGGCGGAGCTCAAGTCG AGGGTGCTCGGGGCGCTCGCGAAGCTCTCCGACAGGGACACGCACCACATCGCCGTCGAG GACCTCGACCGCATCATCCGCTCGCTGCCGTCGCCCGACGCCGTGCCCATGCTGGTGCAC GCGCTGGCGTCGGACTCGCCGGGCCTCGCGTCCCCCGCGCGGCGGGAGTCGCTGCGCCTC CTCGCCACGCTCTGCGCGGCGCACCCCGACGCCGCCGCGCCCTACCTGCAGAAGGTGATG GCGCACCTCGCGCGGAGGCTCAAGGACACCAACTCGGACTCCTCCGTGCGCGACGCGTGC CGCGATGCCGCCGGCCAGCTCTCGGAGGTGTACCTCCGACCCCTGGCGGCCTCGGCTGCC GCTGAAGCGGGCAATGCGACTGTCACACTGTTCGTGAAGCCACTGTTTGAGGCGATGGGG GAGCAGAGCAAGGCAGTGCAGGGTGGGGCGGCGGCCTGCCTGGCAAAGACGGTGGAGGGC GCGGGGCCTGGACCTGGCGTGGTAGGGATGTTTGGGAAGATTGGTCCGAGGGTTTGCAAA TTGCTTGGTGGACAGGGAGTACAGGCTAAAGGGGCACTTCTCACCATCATCGGGAGCTTG TCTCAGGTTGGAGCAATCAGTCCTCAGAATATGCCTCAAACATTGCAAAGCATTCGTGAC TGTCTCGAGAACAGTGATTGGGCTACTAGAAAAGCTGCAGCTGATACATTGTGTGTCCTG GCCACATATTCAGGCCGATTGATAGGTGATGGAACAGCTCCAACAATAGCTGCTCTTGAA GCTTGTCGCTTCGATAAGGTAAAACCTGTCAGAGATAGCATGGCTGATGCAGTGCAGCTA TGGAAAAAAATGGCAGGAGATGATTCGAACGATGGTAAAAATAAGGAATCAGCTGATAAT GAAGGGAAAATGGATTCACCTAATAACAATGACAAAGTGAAGGGCAGTAGCATGGCTGAA AAAGCAGCAGTTCTCTTAAAGAAAAGACCTACATTAACCGATAGGGAATTGAACCCTGAA TTTTTTCAAAAGCTCGAGACAAGAATCACAGATGAATTAGCTGTTGAGGTGGTTGTACCC CGCAAAACTTTACAATCTCATTTACAAAGTGAAGAGGAACCAGAAGATGCAGATGGCGAT CCTGTTGGTCCAGCTAACAGCAATGGATCAGCAGATGATGAAGCAAATTTGACTCAACTG CGTTCTAGCTCTAATTTTCAAAATATTCGAGATAGATGGGCTGGCCAGAGAGGAAGTAGA AACAAAGATGCAAAGGTTAGGGCATCTGATGTTGAAGATAGGAATGAATCTAGTGCAAAA GATTCTGCTTCAGCAGCAATGAATGTTCCTGGAGAAGGGCCTTCCTTAAATAATAAAACA AACTGGTTGGCGATACAGAGGCAGTTGTCCCACTTGGATAGACAGCAGACTAGTCTAATG AACATGCTGCAGGATTTCATGGGAGGATCTCATGACAGTATGGTTACTTTAGAGAACCGA GTGCGTGGTCTTGAGAGAGTTGTTGAGGAAATGGCCAGGGATATATCACTATCATCAGGC AGGAGAGGTGGTGGCCCCATGCTGGGCTTTGATTCATCTCCTGGTAGATCATCTATGAAA TACAATGGTTTTCATGAATATTCTAATTCAAAATTTGGGAGGGATCGTGATGGACGGGTG GGATTTGCAGAAAGGTACTTTTCTGGAGATGGTATGTCTTCTGGTGTAAGAAGCTCTGAA CCATGGGACTCGTATGCTTATTCTGGATCAAGAAGTGGTATGAATGCCAGGAGAGGGTTG GACTCTGTTTCATCTGATAACAGGGTGCCTAGAAATGAACGAAGCAATGATCAAGCAGGA CCTAGGCGAGGATGGGACAAAGGACAGGGTCCATTTAGGTTTGGGGAGGGTCCTTCTGCT CGAAGTGCATGGCGAGCCTCCAAAGATGAAGCGACACTGGAAGCTATTAGGGTTGCTGGT GAAGATAATGGAACTTCTAGGGCAGCTGCGAGAGTTGCTATCCGTGAATTGGATGGGGAA ACTTTGAATGATGATAATCAAGGGGATGAAAGAGGACCAATTTGGGAGTCTTGGACTCGT GCAATGGATGCGATACATGTTGGTGATATGGATTCGGCTTATGCTGAGGTTCTTTCAACT GGGGATGCTGAATTACTTGTAAAATTAATGGAGCAAACTGGACCAGTAGTTGATCAACTT TCAAATGAAGTTGCAAACGAAGTCCTACATGCTGTTGGACAATTTCTTGTGGAAGAAAGC TTCTATGATATAGCTTTGAGCTGGCTTCAGCAGTTGACTGATCTGGTAATGGACAACGGA TCCGGTTATCTTGGAATCCCCCTAGATGCGAAGAACGACCTCTTACTGGGATTACACGAA GCTACTGCCATTGAGTTGCCTGATGATTGGGAGGGGGCGACGCCGGTTCAGATAATGAAG CAGCTAGCTTCATCATGGCGGATTGATCTGCAGCAGCTTATCAGTTAG

Peptide Sequence

PEP ID	Os07t0520400-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:20087170:20093360:-1 gene:Os07g0520400 transcript:Os07t0520400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Potyviral helper component protease-interacting protein 2. (Os07t0520400-01)
Sequence	MATAVSKSAAKPHPRSPTTAQPPNNGSAAGAAAGGGGGGVGMGPAGATPSKNAAMAELKS RVLGALAKLSDRDTHHIAVEDLDRIIRSLPSPDAVPMLVHALASDSPGLASPARRESLRL LATLCAAHPDAAAPYLQKVMAHLARRLKDTNSDSSVRDACRDAAGQLSEVYLRPLAASAA AEAGNATVTLFVKPLFEAMGEQSKAVQGGAAACLAKTVEGAGPGPGVVGMFGKIGPRVCK LLGGQGVQAKGALLTIIGSLSQVGAISPQNMPQTLQSIRDCLENSDWATRKAAADTLCVL ATYSGRLIGDGTAPTIAALEACRFDKVKPVRDSMADAVQLWKKMAGDDSNDGKNKESADN EGKMDSPNNNDKVKGSSMAEKAAVLLKKRPTLTDRELNPEFFQKLETRITDELAVEVVVP RKTLQSHLQSEEEPEDADGDPVGPANSNGSADDEANLTQLRSSSNFQNIRDRWAGQRGSR NKDAKVRASDVEDRNESSAKDSASAAMNVPGEGPSLNNKTNWLAIQRQLSHLDRQQTSLM NMLQDFMGGSHDSMVTLENRVRGLERVVEEMARDISLSSGRRGGGPMLGFDSSPGRSSMK YNGFHEYSNSKFGRDRDGRVGFAERYFSGDGMSSGVRSSEPWDSYAYSGSRSGMNARRGL DSVSSDNRVPRNERSNDQAGPRRGWDKGQGPFRFGEGPSARSAWRASKDEATLEAIRVAG EDNGTSRAAARVAIRELDGETLNDDNQGDERGPIWESWTRAMDAIHVGDMDSAYAEVLST GDAELLVKLMEQTGPVVDQLSNEVANEVLHAVGQFLVEESFYDIALSWLQQLTDLVMDNG SGYLGIPLDAKNDLLLGLHEATAIELPDDWEGATPVQIMKQLASSWRIDLQQLIS

Transcript Sequence

Transcript ID	Os07t0520400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:20087170:20093360:-1 gene:Os07g0520400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Potyviral helper component protease-interacting protein 2. (Os07t0520400-01)
Sequence	GCCCTTTCGCCCTCTCTCTCTCTCTCGCCTCCGCCCTCCTCGCCTTTCTCCCCCACCTCC ACCTCCTCCGCTCCCGAGGCGAGATCTCGCCGCCGCCGCCATTCCCCAATCCGCCCCAAA ACCCCCACCCCCCAAACCCTCCGATCGATCCGAGGGAGGAGCCAATCCCGCGCTCGAATT CGTTCGCCCCGAATCAGCCGCTGGATGCGTCGAGCTCGAGGCGGCGGAATTCAAATCTGA GCTCGCCGTTGGCGCGGATCCGACGGGGATGGCGACGGCGGTGTCGAAGTCGGCGGCTAA GCCGCACCCCAGGTCGCCCACCACCGCGCAGCCGCCGAACAACGGCTCCGCGGCGGGGGC GGCGGCGGGGGGCGGGGGCGGTGGAGTGGGTATGGGGCCCGCGGGGGCGACGCCGTCGAA GAACGCGGCGATGGCGGAGCTCAAGTCGAGGGTGCTCGGGGCGCTCGCGAAGCTCTCCGA CAGGGACACGCACCACATCGCCGTCGAGGACCTCGACCGCATCATCCGCTCGCTGCCGTC GCCCGACGCCGTGCCCATGCTGGTGCACGCGCTGGCGTCGGACTCGCCGGGCCTCGCGTC CCCCGCGCGGCGGGAGTCGCTGCGCCTCCTCGCCACGCTCTGCGCGGCGCACCCCGACGC CGCCGCGCCCTACCTGCAGAAGGTGATGGCGCACCTCGCGCGGAGGCTCAAGGACACCAA CTCGGACTCCTCCGTGCGCGACGCGTGCCGCGATGCCGCCGGCCAGCTCTCGGAGGTGTA CCTCCGACCCCTGGCGGCCTCGGCTGCCGCTGAAGCGGGCAATGCGACTGTCACACTGTT CGTGAAGCCACTGTTTGAGGCGATGGGGGAGCAGAGCAAGGCAGTGCAGGGTGGGGCGGC GGCCTGCCTGGCAAAGACGGTGGAGGGCGCGGGGCCTGGACCTGGCGTGGTAGGGATGTT TGGGAAGATTGGTCCGAGGGTTTGCAAATTGCTTGGTGGACAGGGAGTACAGGCTAAAGG GGCACTTCTCACCATCATCGGGAGCTTGTCTCAGGTTGGAGCAATCAGTCCTCAGAATAT GCCTCAAACATTGCAAAGCATTCGTGACTGTCTCGAGAACAGTGATTGGGCTACTAGAAA AGCTGCAGCTGATACATTGTGTGTCCTGGCCACATATTCAGGCCGATTGATAGGTGATGG AACAGCTCCAACAATAGCTGCTCTTGAAGCTTGTCGCTTCGATAAGGTAAAACCTGTCAG AGATAGCATGGCTGATGCAGTGCAGCTATGGAAAAAAATGGCAGGAGATGATTCGAACGA TGGTAAAAATAAGGAATCAGCTGATAATGAAGGGAAAATGGATTCACCTAATAACAATGA CAAAGTGAAGGGCAGTAGCATGGCTGAAAAAGCAGCAGTTCTCTTAAAGAAAAGACCTAC ATTAACCGATAGGGAATTGAACCCTGAATTTTTTCAAAAGCTCGAGACAAGAATCACAGA TGAATTAGCTGTTGAGGTGGTTGTACCCCGCAAAACTTTACAATCTCATTTACAAAGTGA AGAGGAACCAGAAGATGCAGATGGCGATCCTGTTGGTCCAGCTAACAGCAATGGATCAGC AGATGATGAAGCAAATTTGACTCAACTGCGTTCTAGCTCTAATTTTCAAAATATTCGAGA TAGATGGGCTGGCCAGAGAGGAAGTAGAAACAAAGATGCAAAGGTTAGGGCATCTGATGT TGAAGATAGGAATGAATCTAGTGCAAAAGATTCTGCTTCAGCAGCAATGAATGTTCCTGG AGAAGGGCCTTCCTTAAATAATAAAACAAACTGGTTGGCGATACAGAGGCAGTTGTCCCA CTTGGATAGACAGCAGACTAGTCTAATGAACATGCTGCAGGATTTCATGGGAGGATCTCA TGACAGTATGGTTACTTTAGAGAACCGAGTGCGTGGTCTTGAGAGAGTTGTTGAGGAAAT GGCCAGGGATATATCACTATCATCAGGCAGGAGAGGTGGTGGCCCCATGCTGGGCTTTGA TTCATCTCCTGGTAGATCATCTATGAAATACAATGGTTTTCATGAATATTCTAATTCAAA ATTTGGGAGGGATCGTGATGGACGGGTGGGATTTGCAGAAAGGTACTTTTCTGGAGATGG TATGTCTTCTGGTGTAAGAAGCTCTGAACCATGGGACTCGTATGCTTATTCTGGATCAAG AAGTGGTATGAATGCCAGGAGAGGGTTGGACTCTGTTTCATCTGATAACAGGGTGCCTAG AAATGAACGAAGCAATGATCAAGCAGGACCTAGGCGAGGATGGGACAAAGGACAGGGTCC ATTTAGGTTTGGGGAGGGTCCTTCTGCTCGAAGTGCATGGCGAGCCTCCAAAGATGAAGC GACACTGGAAGCTATTAGGGTTGCTGGTGAAGATAATGGAACTTCTAGGGCAGCTGCGAG AGTTGCTATCCGTGAATTGGATGGGGAAACTTTGAATGATGATAATCAAGGGGATGAAAG AGGACCAATTTGGGAGTCTTGGACTCGTGCAATGGATGCGATACATGTTGGTGATATGGA TTCGGCTTATGCTGAGGTTCTTTCAACTGGGGATGCTGAATTACTTGTAAAATTAATGGA GCAAACTGGACCAGTAGTTGATCAACTTTCAAATGAAGTTGCAAACGAAGTCCTACATGC TGTTGGACAATTTCTTGTGGAAGAAAGCTTCTATGATATAGCTTTGAGCTGGCTTCAGCA GTTGACTGATCTGGTAATGGACAACGGATCCGGTTATCTTGGAATCCCCCTAGATGCGAA GAACGACCTCTTACTGGGATTACACGAAGCTACTGCCATTGAGTTGCCTGATGATTGGGA GGGGGCGACGCCGGTTCAGATAATGAAGCAGCTAGCTTCATCATGGCGGATTGATCTGCA GCAGCTTATCAGTTAGGGCCATCGGTTGTTGACATGAGTTAATTTCATTTGTTCATTTCT GCCTATTTTTTCTCTATATATCTTGCTATTAGGGCTATAAGTATTAGGTTTGACAGAACC TTTGAGTGGAACTGTGTTGACATGGATTGGTGTTGTACGGGGAAATATGATGTTGATATT GTTTACCTCATAACCTGTGTTGGCTTTCCTATTTATAATTTGGAGGATCTCAATTTTTAC