Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0513200-03
CDS Infomation

cds chromosome:IRGSP-1.0:7:19668383:19670520:1 gene:Os07g0513200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0513200-01);Pentatricopeptide repeat domain containing protein. (Os07t0513200-02);Hypothetical conserved gene. (Os07t0513200-03)
Sequence

ATGCTCCTCCGCCGCGCCGTCGCCGCCGTAGCGGAGCGCTCCTCCCGATTATCGCACTCG
CGACCCCTCCTCCGGCGCGCGGGCTCTGCCTGCTCTAGCCTCACCACCACCACCACCTCC
CAACATCGTCACGGCCGCCGTCGCGCGCCGCCGGCTGAGAGCAACGCCCTCACAACCACC
GCCGCGCCACGCCCGTTCCCGGACTACTCCCCGCCCCGCCCGGACTCGCCGGCCGACGAC
GACCTCGCGCGCCGCCTCGCCGCCGCCGTCCTCTCCTCCCCTAACCCGGGCTCTCTCCCT
CCCCTCCCCTTCCTCCCTCTCCTCCGCCCACTTCACCTCCTCCTCGCGCTCCCCCTGCTC
GCCTCGCACCCGCACCTCCCCACCATCCTCCTGCCGCTCCTCCTCCTCTTCCCCTCCGGG
CCTCGCCCGCACCCTCACCTGCTCCAGTCCTTCGCGGTCGCTGCCCACCTCGCCGCCGTT
CGCGATCCCGGCGCCGCGCGGGCCATCCTCGTTCGCGCCCTTCGCTTCCCGTCCCCTCAT
CGGCATTTCGTCGAGCAGTTCATCTCCACCTACAAGGCCTTCTCCTCCGACCCTGTCTCA
TTCGACCTCCTCCTCCTGTGCCTCCCCTCCGCGCCTCTCCTCCTCCGCCTCCGCCAGTAC
GGCATCTCTCCCTCCCCGGAGTCCTGTAACGCGGTGCTCTGCCGCCTCCCGCTTGATGAA
GCCGTTCAGTTGTTTCAGGAACTCCCGGAGAAGAACACCTGCTCGTACAATATACTACTC
AAGGCGCTGTGCACCGCTGGCCGCATCAAGGATGCGCACCAACTGTTTGATGAAATGGCA
TCGCCGCCAGATGTTGTAACATATGGCATTATGGTGCATGGGTATTGTACTCTTAGTGAG
CTGGAGACTGCGATTAAGCTGTTAAGTGAAATGGCAGCAAGGGGGTTGGAACTCAACCCA
GTAGCCTATACTAGTGTTATTGCATTGTTGTGCGACGAAGGGCAGGTTTCAGATGCTGTG
AGGGTGGTAGAGGATATGGTGATGCATGGAGTGGTGTTGGATGCAGCGGTGTTCACAACG
GTAATGAGTGGGTTCTGTAGGAAAGGTGATTTGGCAGCTGCAAGGAATTGGTTTGATGAG
ATGCAGAAGAGAGGGTTGGCAGCTGATGGAGTGACGTATACTGCGCTGATCAATGGCCTT
TGTCGGGCTGGAGAGTTGAAAGAGGCAGAGAGAGTGCTTCAGGAGATGGAGGACAAGGGA
TTGGATGTTGATGCGGTCACATATACAGTTCTCATTGATGGGTACTGCAAGGTTGGGAAG
ATGACGGAGGCCTTTCTGGTGCATAACAAAATGGTGCAGAAACGAGTGACACCAAATGTA
GTGACATACACGGCTCTGTCAGATGGACTCTGCAAGCAGGGGGATGTGTGTGCTGCTAAT
GAACTATTGCATGAGATGTGCAGCAAGGGGTTAGAGCTGAATATTTTCACATACAACTCC
CTGATCAATGGCTTGTGCAAGGCTGGCAATTTGGAGCAAGCTATGAGGACCATGATAGAC
ATGGATGAAGCAGGTCTTAAACCAGACGTTTACACATATACAACTATTATTGGTGCTCTT
TGCCAGTCCAAAGAGCTTGACAGGGCTCACAGCCTTTTGCAAGAGATGTTAGATAAAGGA
ATTAAGCCTACTATTGTGACTTATAATGTTCTAATGAATGGCTTTTGCATGTCAGGTAGG
GTAGAAGGAGGTAAGAGGCTGCTTGAATGGATGCTGGAGAAGAACATCCACCCAAATACC
ACAACATACAATTCTCTTATGAAGCAGTATTGCATTGAAAAGAACATGAAATCAACCACC
GAGATCTACAAGGGAATGCTTTCACAGGAGGTGGTACCAAATGAAAACACATATAATATT
TTGATCAAGGGACATTGTAAGGCAAGAAATATGAAAGAGGCTCTGTATTTCCATAGTGAA
ATGATAGAAAAGGGATTCAGGCTTACTGCAAGCTCATACAATGCTCTTATAAGATTGTTG
AAT

Peptide Sequence

PEP ID

Os07t0513200-03
PEP Infomation

pep chromosome:IRGSP-1.0:7:19668383:19670520:1 gene:Os07g0513200 transcript:Os07t0513200-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0513200-01);Pentatricopeptide repeat domain containing protein. (Os07t0513200-02);Hypothetical conserved gene. (Os07t0513200-03)
Sequence

MLLRRAVAAVAERSSRLSHSRPLLRRAGSACSSLTTTTTSQHRHGRRRAPPAESNALTTT
AAPRPFPDYSPPRPDSPADDDLARRLAAAVLSSPNPGSLPPLPFLPLLRPLHLLLALPLL
ASHPHLPTILLPLLLLFPSGPRPHPHLLQSFAVAAHLAAVRDPGAARAILVRALRFPSPH
RHFVEQFISTYKAFSSDPVSFDLLLLCLPSAPLLLRLRQYGISPSPESCNAVLCRLPLDE
AVQLFQELPEKNTCSYNILLKALCTAGRIKDAHQLFDEMASPPDVVTYGIMVHGYCTLSE
LETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTT
VMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKG
LDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAAN
ELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGAL
CQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNT
TTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSE
MIEKGFRLTASSYNALIRLLN

Transcript Sequence

Transcript ID

Os07t0513200-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:19668383:19670520:1 gene:Os07g0513200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os07t0513200-01);Pentatricopeptide repeat domain containing protein. (Os07t0513200-02);Hypothetical conserved gene. (Os07t0513200-03)
Sequence

TTTTTCTTTGCCAACCGATCTGCCCGTCTCCCGCCGCCGCCGCCGCCGTCGCCGCCTCCG
GCAGGAGGCCCAATCCCCGGATCCGCCCGCGCCGGATGCTCCTCCGCCGCGCCGTCGCCG
CCGTAGCGGAGCGCTCCTCCCGATTATCGCACTCGCGACCCCTCCTCCGGCGCGCGGGCT
CTGCCTGCTCTAGCCTCACCACCACCACCACCTCCCAACATCGTCACGGCCGCCGTCGCG
CGCCGCCGGCTGAGAGCAACGCCCTCACAACCACCGCCGCGCCACGCCCGTTCCCGGACT
ACTCCCCGCCCCGCCCGGACTCGCCGGCCGACGACGACCTCGCGCGCCGCCTCGCCGCCG
CCGTCCTCTCCTCCCCTAACCCGGGCTCTCTCCCTCCCCTCCCCTTCCTCCCTCTCCTCC
GCCCACTTCACCTCCTCCTCGCGCTCCCCCTGCTCGCCTCGCACCCGCACCTCCCCACCA
TCCTCCTGCCGCTCCTCCTCCTCTTCCCCTCCGGGCCTCGCCCGCACCCTCACCTGCTCC
AGTCCTTCGCGGTCGCTGCCCACCTCGCCGCCGTTCGCGATCCCGGCGCCGCGCGGGCCA
TCCTCGTTCGCGCCCTTCGCTTCCCGTCCCCTCATCGGCATTTCGTCGAGCAGTTCATCT
CCACCTACAAGGCCTTCTCCTCCGACCCTGTCTCATTCGACCTCCTCCTCCTGTGCCTCC
CCTCCGCGCCTCTCCTCCTCCGCCTCCGCCAGTACGGCATCTCTCCCTCCCCGGAGTCCT
GTAACGCGGTGCTCTGCCGCCTCCCGCTTGATGAAGCCGTTCAGTTGTTTCAGGAACTCC
CGGAGAAGAACACCTGCTCGTACAATATACTACTCAAGGCGCTGTGCACCGCTGGCCGCA
TCAAGGATGCGCACCAACTGTTTGATGAAATGGCATCGCCGCCAGATGTTGTAACATATG
GCATTATGGTGCATGGGTATTGTACTCTTAGTGAGCTGGAGACTGCGATTAAGCTGTTAA
GTGAAATGGCAGCAAGGGGGTTGGAACTCAACCCAGTAGCCTATACTAGTGTTATTGCAT
TGTTGTGCGACGAAGGGCAGGTTTCAGATGCTGTGAGGGTGGTAGAGGATATGGTGATGC
ATGGAGTGGTGTTGGATGCAGCGGTGTTCACAACGGTAATGAGTGGGTTCTGTAGGAAAG
GTGATTTGGCAGCTGCAAGGAATTGGTTTGATGAGATGCAGAAGAGAGGGTTGGCAGCTG
ATGGAGTGACGTATACTGCGCTGATCAATGGCCTTTGTCGGGCTGGAGAGTTGAAAGAGG
CAGAGAGAGTGCTTCAGGAGATGGAGGACAAGGGATTGGATGTTGATGCGGTCACATATA
CAGTTCTCATTGATGGGTACTGCAAGGTTGGGAAGATGACGGAGGCCTTTCTGGTGCATA
ACAAAATGGTGCAGAAACGAGTGACACCAAATGTAGTGACATACACGGCTCTGTCAGATG
GACTCTGCAAGCAGGGGGATGTGTGTGCTGCTAATGAACTATTGCATGAGATGTGCAGCA
AGGGGTTAGAGCTGAATATTTTCACATACAACTCCCTGATCAATGGCTTGTGCAAGGCTG
GCAATTTGGAGCAAGCTATGAGGACCATGATAGACATGGATGAAGCAGGTCTTAAACCAG
ACGTTTACACATATACAACTATTATTGGTGCTCTTTGCCAGTCCAAAGAGCTTGACAGGG
CTCACAGCCTTTTGCAAGAGATGTTAGATAAAGGAATTAAGCCTACTATTGTGACTTATA
ATGTTCTAATGAATGGCTTTTGCATGTCAGGTAGGGTAGAAGGAGGTAAGAGGCTGCTTG
AATGGATGCTGGAGAAGAACATCCACCCAAATACCACAACATACAATTCTCTTATGAAGC
AGTATTGCATTGAAAAGAACATGAAATCAACCACCGAGATCTACAAGGGAATGCTTTCAC
AGGAGGTGGTACCAAATGAAAACACATATAATATTTTGATCAAGGGACATTGTAAGGCAA
GAAATATGAAAGAGGCTCTGTATTTCCATAGTGAAATGATAGAAAAGGGATTCAGGCTTA
CTGCAAGCTCATACAATGCTCTTATAAGATTGTTGAAT