Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0508300-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:19309976:19315478:-1 gene:Os07g0508300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to SH3 domain-containing protein 3. (Os07t0508300-01);Similar to clathrin binding protein. (Os07t0508300-02)
Sequence	ATGGATGTGCTGAGGAAGCAGGCGAGCAAGTTCAAGGAGCAGGTCGCCAAGCAGCAGCAG GCTGTGATAAAGCAGTTCAGTACTACGGGCTATGAACATTCAGACGCTGTTGTAATTGAT GAAGTTGAATTACAGAGACATCAACAGCTTGAGAAATTGTACACTTCTACTCGTTCTGGA AGGGATTTCCAAAAGGACATTGTTCGAGCGGCTGAAGGTTTGGTTTCTATTGGAATCAGG CATGTTGAAGTGGGAACAAAATTTTCAGAGGATTGTTATAGATATGGAGGTGAAAGTAGT GCTAGTGATGAAGCCCTTGCAAAAGCAGCATCTCTGTATGGAGGTGCTCTAAGAAATGTT GAGAAAGAGTACGAAGAATTTAATAGAATTTTATCTTCTCAGACTATAGATCCATTGAGG GCTATGGCTGCAGGCGCTCCCCTGGAAGATGCTCGTGGTCTTGCACAACGTTATAGCCGG ATGAGACATGAAGCTGAGATCCTTTCTGCTGAAATTGCTAGAAGGAAGCAACGGGTACGA GAAGCTCCACTTGCTGAGCACACTACGAAGCTTCAACAGTCTGAATCTAAAATGATAGAG CACAAAGCAAGCATGGCTGTGTTAGGAAAGGAAGCTGCTGCTGCACTTGCCGCTGTTGAA TCTCAGCAGCAAAGGATAACTCTTCAGCGCCTGGTTGGCATGGTAGAAGCAGAAAAGTTA TTTCATTTGAGGTTAGCTGCTATACTTGATGATGTTGAAGCTGAGATGTCCTCTGAAAAG CAAAAGAGAGAATCTGCACCGCCTACTATTCATTCCCATAAGCGTGCTGAGAAGGCCCAG TACTTCCTTGCTGAGGCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTA ATTGTTGGTGATTATGTCGTTGTTCGTCAGATTGCTCCGAATGGTTGGGCCGAAGGAGAA TGCAAGGGGGTGGCAGGATGGTTCCCGGCTGCCTACGTGGAGAGGCGTGAAAATATCCCG CCAAACAAAGTCTTCCCGCAAGCATAA

Peptide Sequence

PEP ID	Os07t0508300-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:19309976:19315478:-1 gene:Os07g0508300 transcript:Os07t0508300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to SH3 domain-containing protein 3. (Os07t0508300-01);Similar to clathrin binding protein. (Os07t0508300-02)
Sequence	MDVLRKQASKFKEQVAKQQQAVIKQFSTTGYEHSDAVVIDEVELQRHQQLEKLYTSTRSG RDFQKDIVRAAEGLVSIGIRHVEVGTKFSEDCYRYGGESSASDEALAKAASLYGGALRNV EKEYEEFNRILSSQTIDPLRAMAAGAPLEDARGLAQRYSRMRHEAEILSAEIARRKQRVR EAPLAEHTTKLQQSESKMIEHKASMAVLGKEAAAALAAVESQQQRITLQRLVGMVEAEKL FHLRLAAILDDVEAEMSSEKQKRESAPPTIHSHKRAEKAQYFLAEAVHNFNGTTEKELSL IVGDYVVVRQIAPNGWAEGECKGVAGWFPAAYVERRENIPPNKVFPQA

Transcript Sequence

Transcript ID	Os07t0508300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:19309976:19315478:-1 gene:Os07g0508300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to SH3 domain-containing protein 3. (Os07t0508300-01);Similar to clathrin binding protein. (Os07t0508300-02)
Sequence	GGGGTCGCTCCCTCTCTCGGCTCTCGCGCTCGCTTTCTGTCTGTCTCTGCTCTCGCTCCG CCGCCCCGCCTCCTCCGTTCGCCGAGCGCCCGCCGCGTCGCCGGCCGCCACACGGCCAAC CTCTTCCTTCCTCGCCGCCCCCTCGCGCTTCCAGTTCCTCCTCCTCCTCCGTTTCTAACT AGCGAGGATTAGGGTTAGCCCTACTACCTTCGCGCTCTTCCCCCAACCCCCGCTTCGCTT CTTCCTCGTCTCGGTCGCAGCACGACGTCCGCTTCAGTGAGGGAAGGGGAGGGAGAGGGA TGGATGTGCTGAGGAAGCAGGCGAGCAAGTTCAAGGAGCAGGTCGCCAAGCAGCAGCAGG CTGTGATAAAGCAGTTCAGTACTACGGGCTATGAACATTCAGACGCTGTTGTAATTGATG AAGTTGAATTACAGAGACATCAACAGCTTGAGAAATTGTACACTTCTACTCGTTCTGGAA GGGATTTCCAAAAGGACATTGTTCGAGCGGCTGAAGGTTTGGTTTCTATTGGAATCAGGC ATGTTGAAGTGGGAACAAAATTTTCAGAGGATTGTTATAGATATGGAGGTGAAAGTAGTG CTAGTGATGAAGCCCTTGCAAAAGCAGCATCTCTGTATGGAGGTGCTCTAAGAAATGTTG AGAAAGAGTACGAAGAATTTAATAGAATTTTATCTTCTCAGACTATAGATCCATTGAGGG CTATGGCTGCAGGCGCTCCCCTGGAAGATGCTCGTGGTCTTGCACAACGTTATAGCCGGA TGAGACATGAAGCTGAGATCCTTTCTGCTGAAATTGCTAGAAGGAAGCAACGGGTACGAG AAGCTCCACTTGCTGAGCACACTACGAAGCTTCAACAGTCTGAATCTAAAATGATAGAGC ACAAAGCAAGCATGGCTGTGTTAGGAAAGGAAGCTGCTGCTGCACTTGCCGCTGTTGAAT CTCAGCAGCAAAGGATAACTCTTCAGCGCCTGGTTGGCATGGTAGAAGCAGAAAAGTTAT TTCATTTGAGGTTAGCTGCTATACTTGATGATGTTGAAGCTGAGATGTCCTCTGAAAAGC AAAAGAGAGAATCTGCACCGCCTACTATTCATTCCCATAAGCGTGCTGAGAAGGCCCAGT ACTTCCTTGCTGAGGCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAA TTGTTGGTGATTATGTCGTTGTTCGTCAGATTGCTCCGAATGGTTGGGCCGAAGGAGAAT GCAAGGGGGTGGCAGGATGGTTCCCGGCTGCCTACGTGGAGAGGCGTGAAAATATCCCGC CAAACAAAGTCTTCCCGCAAGCATAAACCGCCAAATGCTAGTTGAAAATCTAGATTTGCG CTGCTAAAATCTGTAATTTGGTTTGGGACTGCCATGATTTTTGGTCCTTTTGGAGTTGTT TAGGCCGTATGACTGGTATGTTCTTTGTTCTACCTTGTACATGTTTTAGTAACTTGTGAT CAGTATACATGTTTTCCTGGCAGCAGATTAGACAGTAGACTAAAAGCTTTGGCCATTCAT GATGATGCCTTTCGAATGTAAAGTTATTTATGTACCAAATTCTTTCGCTAATGATGTGCT TATTGATTGATGATTCC