Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0501100-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:18873790:18875926:-1 gene:Os07g0501100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Chalcone synthase, polyketide synthase 12 description:Similar to Chalcone synthase 2 (EC 2.3.1.74) (Naringenin-chalcone synthase 2). (Os07t0501100-01)
Sequence	ATGGCACCTGTTCCGGCCACCGCCGCCGCCGCCGCCCCTGCGGCCGTCGTCAGCACCCAC GAGATCCGGCGTGCGCAGCGCGCCGATGGCCCGGCCACCGTGCTCGCCATCGGCACGGCG AACCCGGAGACGTGCGTGCCGCAGGATGAGTACGCCGACTTCTACTTCCGCGTCACCAAG AGCGAGCACCTGCCTGAGCTCAAGAACAAGCTCAGGAGAATCTGTAACAAGTCAGGCATC GAGAAGCGGTTCATGTTCGTGAACGACGACGTCATGGAGGCACACCCGGAGTTCGCCGAC CGACACCTGACGTCACTCGACGCCAGGGTGGAGATCGTCTCCAAGGTCGTGCCGGAGCTC GCCGCGGCCGCCTCGGCGAAGGCGATCGCCGAGTGGGGCCGGCCGGCCACCGACATCACC CACCTCATCTTCAGCACCTACTCCGGCGTCAAGGCGCCCGGCGGCGACCGCCTGCTGGCG TCGCTCCTCGGCCTCCGCCCCACCGTGTCGCGCACCGTGCTCAGCCTCCACGGCTGCTAC GGCGGCGGCCGGGCGCTGCAGCTCGCCAAGGAGCTCGCCGAGAACAACCGCGGCGCGCGC GTCCTCGTCGCCTGCGCCGAGTCCACGCTCATCGCGTTCTACGGGCCCGAGGTGGGGTGC AACGACACCATCATCGGGCAGGCGCTGTTCGGCGACGGCTCGGGCGCCGTCATCGTCGGC GCCGACCCGGTCGGCGCCGTCGAGCGCCCGCTGTTCGAGATGGCGTTCGCGTCGCAGGCC ACCGTCCCGGACAGCGAGGGCGCCATCACCATGCAGCACAAGAAGGGCGGCATGGACTAC CACATCGGCGGCGGCGTGCCGGAGATGCTCGCCGGCAGCATCGAGCGGTGCCTGGCCGAC GCGTTCGGCGCCATCGGCGTCGCCGCCAGGTGGAGGGACCTCTTCTGGGCCGTCCACCCG GGTGGCCGAAGGATCCTGGACCTCATCGAGGAGGCGCTCGGGCTGGACAACGGCGCCATG GCGGCGAGCCGGCAGGTGCTGCGCGAGTACGGCAACATGAGCGGCACCACGGTGATCTTC GTGCTCAACGAGCTGCGCCGCCGGTTCGTCGCCGACGGCGCCGAGGGAGCCGACTGGGGC GCGCTGATGGCGTTCGGGCCGGGCGTCACCGTTGAGACCATTTTGCTCCGCGTCGGAAGC GGCCTCAAGGGAAATTAA

Peptide Sequence

PEP ID	Os07t0501100-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:18873790:18875926:-1 gene:Os07g0501100 transcript:Os07t0501100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Chalcone synthase, polyketide synthase 12 description:Similar to Chalcone synthase 2 (EC 2.3.1.74) (Naringenin-chalcone synthase 2). (Os07t0501100-01)
Sequence	MAPVPATAAAAAPAAVVSTHEIRRAQRADGPATVLAIGTANPETCVPQDEYADFYFRVTK SEHLPELKNKLRRICNKSGIEKRFMFVNDDVMEAHPEFADRHLTSLDARVEIVSKVVPEL AAAASAKAIAEWGRPATDITHLIFSTYSGVKAPGGDRLLASLLGLRPTVSRTVLSLHGCY GGGRALQLAKELAENNRGARVLVACAESTLIAFYGPEVGCNDTIIGQALFGDGSGAVIVG ADPVGAVERPLFEMAFASQATVPDSEGAITMQHKKGGMDYHIGGGVPEMLAGSIERCLAD AFGAIGVAARWRDLFWAVHPGGRRILDLIEEALGLDNGAMAASRQVLREYGNMSGTTVIF VLNELRRRFVADGAEGADWGALMAFGPGVTVETILLRVGSGLKGN

Transcript Sequence

Transcript ID	Os07t0501100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:18873790:18875926:-1 gene:Os07g0501100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Chalcone synthase, polyketide synthase 12 description:Similar to Chalcone synthase 2 (EC 2.3.1.74) (Naringenin-chalcone synthase 2). (Os07t0501100-01)
Sequence	AAACCACGCAGCCACGACACATCGATCTCCCATCTCCTTGTGCAGCCGCTGATCTCTATA GCTAGCATCCTCTGATCCATTGATCATACAAGCACTTACCTAGCTAAGCTAGCTCGCTTG CATTTGCTATATAGTTTGAATTTGTCACCCACAGCGTCGACGTTCATGGCACCTGTTCCG GCCACCGCCGCCGCCGCCGCCCCTGCGGCCGTCGTCAGCACCCACGAGATCCGGCGTGCG CAGCGCGCCGATGGCCCGGCCACCGTGCTCGCCATCGGCACGGCGAACCCGGAGACGTGC GTGCCGCAGGATGAGTACGCCGACTTCTACTTCCGCGTCACCAAGAGCGAGCACCTGCCT GAGCTCAAGAACAAGCTCAGGAGAATCTGTAACAAGTCAGGCATCGAGAAGCGGTTCATG TTCGTGAACGACGACGTCATGGAGGCACACCCGGAGTTCGCCGACCGACACCTGACGTCA CTCGACGCCAGGGTGGAGATCGTCTCCAAGGTCGTGCCGGAGCTCGCCGCGGCCGCCTCG GCGAAGGCGATCGCCGAGTGGGGCCGGCCGGCCACCGACATCACCCACCTCATCTTCAGC ACCTACTCCGGCGTCAAGGCGCCCGGCGGCGACCGCCTGCTGGCGTCGCTCCTCGGCCTC CGCCCCACCGTGTCGCGCACCGTGCTCAGCCTCCACGGCTGCTACGGCGGCGGCCGGGCG CTGCAGCTCGCCAAGGAGCTCGCCGAGAACAACCGCGGCGCGCGCGTCCTCGTCGCCTGC GCCGAGTCCACGCTCATCGCGTTCTACGGGCCCGAGGTGGGGTGCAACGACACCATCATC GGGCAGGCGCTGTTCGGCGACGGCTCGGGCGCCGTCATCGTCGGCGCCGACCCGGTCGGC GCCGTCGAGCGCCCGCTGTTCGAGATGGCGTTCGCGTCGCAGGCCACCGTCCCGGACAGC GAGGGCGCCATCACCATGCAGCACAAGAAGGGCGGCATGGACTACCACATCGGCGGCGGC GTGCCGGAGATGCTCGCCGGCAGCATCGAGCGGTGCCTGGCCGACGCGTTCGGCGCCATC GGCGTCGCCGCCAGGTGGAGGGACCTCTTCTGGGCCGTCCACCCGGGTGGCCGAAGGATC CTGGACCTCATCGAGGAGGCGCTCGGGCTGGACAACGGCGCCATGGCGGCGAGCCGGCAG GTGCTGCGCGAGTACGGCAACATGAGCGGCACCACGGTGATCTTCGTGCTCAACGAGCTG CGCCGCCGGTTCGTCGCCGACGGCGCCGAGGGAGCCGACTGGGGCGCGCTGATGGCGTTC GGGCCGGGCGTCACCGTTGAGACCATTTTGCTCCGCGTCGGAAGCGGCCTCAAGGGAAAT TAAATAAACTTAAGTAAATTTAATTATTTTACTTATACATGAATTGCATTCTATTGGAAG GTAAGTCCTATAATAAAATGTGTTGAGTCCTACCACTTTGTTTGTCCGTTTGGGTCATGG ACATTTTTAATTAGGGCATCAAGTTGAGGGAGTAGCTCTGCTAAAAGGAGAGATGTTTGG ACCTTAACTGGGTGTTTTGGAAGTGACCTTGAACCCAAAAGTGTGGAGTAGCTATAATCA TGGTCATGCATGCCATTTGTTAATTACTGCTTAATGACGATCTTTGTAATATCAAAAGTT AAATAAATAAAGATCTTTGTGCGCAGTTACAGTTCGTTTACACAGC