Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0496200-02
CDS Infomation	cds chromosome:IRGSP-1.0:7:18587516:18595142:1 gene:Os07g0496200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor (EC 1.1.1.39) (NAD-ME). (Os07t0496200-01);Similar to NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor (EC 1.1.1.39) (NAD-ME). (Os07t0496200-02);Similar to Malic enzyme. (Os07t0496200-03)
Sequence	ATGGCGGCGGCGTCCATCTCGCGGAGCCTCCTCCGCCGATCCCGCTGCGGCGGCGGGGAG CACCACCTCCTCCTGCTGGCGCGCGGCTTCGTCACGGCGGAGTGCCACCGCCCCGTCGTG CTCCACAAGCGCGGCTCCGACATCCTCCACGACCCATGGTTCAACCGGGGCACGGGGTTC TCGATGACGGAGAGGGACCGCCTCGGCCTCCGCGGCCTGCTCCCGCCCAACGTCGTCTCC TCCCAGCAGCAGATCGACCGATTCATGCTTGACATGCAACGGCTGCAGAAATATGCGAGA GATGGCCCATCGGATACTTACCCGTTAGCAAAATGGCGTATCCTTAACAGGCTGCATGAC AGAAATGAAACAATGTATTACAAGGTCTTAATAGATAATATTGAGGAACATGCACCTATT GTTTACACGCCGACTGTTGGACTTGTTTGTCAAAACTATAGTGGTTTATTTAGACGGCCT CGGGGAATGTATTTTAGTGCAGAAGATCGTGGGGAAATGATGTCCATGGTGTACAACTGG CCAGCTGACCAGGTTGACATGATAGTAGTGACTGATGGAAGCAGGATATTGGGCCTGGGT GATCTCGGGGTGCATGGTATTGGTATTGCCATTGGAAAGTTGGATCTATATGTTGCTGCT GCTGGAATAAATCCCCAGAGGGTTCTTCCGGTCATGATTGATGTGGGAACAAACAATGAG AAGCTCCTCAAGGATCCTCTGTATCTTGGGTTACAAGAACATCGTCTGGAGGGGGAAGAA TATGTAGCGATTATCGATGAATTTATGGAAGCGGTTTTCGCTCGCTGGCCGAATGTTATT GTACAGTTTGAAGATTTCCAGAGCAAGTGGGCCTTCAGGTTGTTGCAGCGTTACAGGAAG ACTTATCGGATGTTTAATGATGACGTTCAGGGAACTGCTGGCGTTGCTATAGCTGGTCTC TTAGGAGCTGTAAGAGCACAAGGAAGGCCAATGTTAGATTTCCCAAAGCAAAAGATTGTT GTTGCAGGGGCTGGCAGTGCTGGGATTGGTGTTGTGAATGCTGCAAGCCGGACTATGGCA AGGATGCTGGGAAACAATGAGGTTGCTTTTGAGAGTGCCAGGAGTCAATTCTGGATAGTC GATGCCCATGGTCTAATAACAGAGGAGCGCACAAACATTGACCCAGATGCACGGCCTTTT GCTAGGAGAAAGAGTGAACTAGGTCACCAAGGCCTAAGTGAAGGGGCGAGCTTGGTTGAA GTGGTTAAAAAGGTGAAGCCTGATGTCATACTTGGATTATCTGCTGTTGGTGGTTTGTTC TCAAAGGAGGTTTTAGAAGCATTAAAAGACTCATCCTCTTCAAGACCAGCAATTTTCGCG ATGTCAAATCCAACTAAGAATGCTGAATGTACACCTGAAGAAGCCTTTTCAATTCTTGGT GAAAAGATCATCTTTGCCAGTGGAAGCCCATTTAGTGATGTGGATCTTGGTAATGGAAAG ATTGGCCACTCAAATCAAGGGAATAACATGTATCTCTTTCCTGGAATAGGGCTTGGAACC CTTCTATCTGGAGCACGGGTTATCTCAGACGGAATGCTTCAGGCTGCAGCTGAACGCTTG GCTTCGTATATGAAAGAAGAGGAAGTTCTCGAAGGGATAGTATACCCTCCAATCTCCAGA ATACGTGATATCACCAAGGAGGTGGCAGCAGCAGTTGTGAAGGAAGCTGTTGCAGAGGAT CTAGCTGAGGGATATCGTGACATGGATGCACGTGAACTTGCAAGACTCAGTGAGGAAGAA ACAGTTGAGTATGTCCAGCAGAACATGTGGAGTCCAGTTTATCCAACAATAGTGTACAAG AAAGACTAG

Peptide Sequence

PEP ID	Os07t0496200-02
PEP Infomation	pep chromosome:IRGSP-1.0:7:18587516:18595142:1 gene:Os07g0496200 transcript:Os07t0496200-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor (EC 1.1.1.39) (NAD-ME). (Os07t0496200-01);Similar to NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor (EC 1.1.1.39) (NAD-ME). (Os07t0496200-02);Similar to Malic enzyme. (Os07t0496200-03)
Sequence	MAAASISRSLLRRSRCGGGEHHLLLLARGFVTAECHRPVVLHKRGSDILHDPWFNRGTGF SMTERDRLGLRGLLPPNVVSSQQQIDRFMLDMQRLQKYARDGPSDTYPLAKWRILNRLHD RNETMYYKVLIDNIEEHAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNW PADQVDMIVVTDGSRILGLGDLGVHGIGIAIGKLDLYVAAAGINPQRVLPVMIDVGTNNE KLLKDPLYLGLQEHRLEGEEYVAIIDEFMEAVFARWPNVIVQFEDFQSKWAFRLLQRYRK TYRMFNDDVQGTAGVAIAGLLGAVRAQGRPMLDFPKQKIVVAGAGSAGIGVVNAASRTMA RMLGNNEVAFESARSQFWIVDAHGLITEERTNIDPDARPFARRKSELGHQGLSEGASLVE VVKKVKPDVILGLSAVGGLFSKEVLEALKDSSSSRPAIFAMSNPTKNAECTPEEAFSILG EKIIFASGSPFSDVDLGNGKIGHSNQGNNMYLFPGIGLGTLLSGARVISDGMLQAAAERL ASYMKEEEVLEGIVYPPISRIRDITKEVAAAVVKEAVAEDLAEGYRDMDARELARLSEEE TVEYVQQNMWSPVYPTIVYKKD

Transcript Sequence

Transcript ID	Os07t0496200-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:18587516:18595142:1 gene:Os07g0496200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor (EC 1.1.1.39) (NAD-ME). (Os07t0496200-01);Similar to NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor (EC 1.1.1.39) (NAD-ME). (Os07t0496200-02);Similar to Malic enzyme. (Os07t0496200-03)
Sequence	AGATCCCCCCGCCGCGCCGCGTCGTCTCGCTCTCATCTCCTCCCCCAAAAAGCCGGAAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAATAATTCGAACGCGGCATCGCGCTGGTGAGTG TGAGAGTGAGATCGATGGCGGCGGCGTCCATCTCGCGGAGCCTCCTCCGCCGATCCCGCT GCGGCGGCGGGGAGCACCACCTCCTCCTGCTGGCGCGCGGCTTCGTCACGGCGGAGTGCC ACCGCCCCGTCGTGCTCCACAAGCGCGGCTCCGACATCCTCCACGACCCATGGTTCAACC GGGGCACGGGGTTCTCGATGACGGAGAGGGACCGCCTCGGCCTCCGCGGCCTGCTCCCGC CCAACGTCGTCTCCTCCCAGCAGCAGATCGACCGATTCATGCTTGACATGCAACGGCTGC AGAAATATGCGAGAGATGGCCCATCGGATACTTACCCGTTAGCAAAATGGCGTATCCTTA ACAGGCTGCATGACAGAAATGAAACAATGTATTACAAGGTCTTAATAGATAATATTGAGG AACATGCACCTATTGTTTACACGCCGACTGTTGGACTTGTTTGTCAAAACTATAGTGGTT TATTTAGACGGCCTCGGGGAATGTATTTTAGTGCAGAAGATCGTGGGGAAATGATGTCCA TGGTGTACAACTGGCCAGCTGACCAGGTTGACATGATAGTAGTGACTGATGGAAGCAGGA TATTGGGCCTGGGTGATCTCGGGGTGCATGGTATTGGTATTGCCATTGGAAAGTTGGATC TATATGTTGCTGCTGCTGGAATAAATCCCCAGAGGGTTCTTCCGGTCATGATTGATGTGG GAACAAACAATGAGAAGCTCCTCAAGGATCCTCTGTATCTTGGGTTACAAGAACATCGTC TGGAGGGGGAAGAATATGTAGCGATTATCGATGAATTTATGGAAGCGGTTTTCGCTCGCT GGCCGAATGTTATTGTACAGTTTGAAGATTTCCAGAGCAAGTGGGCCTTCAGGTTGTTGC AGCGTTACAGGAAGACTTATCGGATGTTTAATGATGACGTTCAGGGAACTGCTGGCGTTG CTATAGCTGGTCTCTTAGGAGCTGTAAGAGCACAAGGAAGGCCAATGTTAGATTTCCCAA AGCAAAAGATTGTTGTTGCAGGGGCTGGCAGTGCTGGGATTGGTGTTGTGAATGCTGCAA GCCGGACTATGGCAAGGATGCTGGGAAACAATGAGGTTGCTTTTGAGAGTGCCAGGAGTC AATTCTGGATAGTCGATGCCCATGGTCTAATAACAGAGGAGCGCACAAACATTGACCCAG ATGCACGGCCTTTTGCTAGGAGAAAGAGTGAACTAGGTCACCAAGGCCTAAGTGAAGGGG CGAGCTTGGTTGAAGTGGTTAAAAAGGTGAAGCCTGATGTCATACTTGGATTATCTGCTG TTGGTGGTTTGTTCTCAAAGGAGGTTTTAGAAGCATTAAAAGACTCATCCTCTTCAAGAC CAGCAATTTTCGCGATGTCAAATCCAACTAAGAATGCTGAATGTACACCTGAAGAAGCCT TTTCAATTCTTGGTGAAAAGATCATCTTTGCCAGTGGAAGCCCATTTAGTGATGTGGATC TTGGTAATGGAAAGATTGGCCACTCAAATCAAGGGAATAACATGTATCTCTTTCCTGGAA TAGGGCTTGGAACCCTTCTATCTGGAGCACGGGTTATCTCAGACGGAATGCTTCAGGCTG CAGCTGAACGCTTGGCTTCGTATATGAAAGAAGAGGAAGTTCTCGAAGGGATAGTATACC CTCCAATCTCCAGAATACGTGATATCACCAAGGAGGTGGCAGCAGCAGTTGTGAAGGAAG CTGTTGCAGAGGATCTAGCTGAGGGATATCGTGACATGGATGCACGTGAACTTGCAAGAC TCAGTGAGGAAGAAACAGTTGAGTATGTCCAGCAGAACATGTGGAGTCCAGTTTATCCAA CAATAGTGTACAAGAAAGACTAGAGCTTTAATGTCCACGTATTCTATTGCTCATGCCCAA TTCTCTGAAGGCTGCAGTTTGTATCTTTCAAAATACTGGCGCTTCTGTTATGAGAATCCA ATATATTGTTTTCAT