Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0492100-01
CDS Infomation	cds chromosome:IRGSP-1.0:7:18338217:18351636:-1 gene:Os07g0492100 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA helicase, UvrD/REP type domain containing protein. (Os07t0492100-01)
Sequence	ATGTCGCGCTGGAAGGAGAACGCCTCCCCTCTCCCCCTCCACCCCGGCGGCTCCTCCTCC CTCCTCCCCCGCAAGCGCCCTCCCCCATCCCCGCCCCCTCCGCAGCCCCCGTGCCCGCCG CCGCGCCGCCCGCTCGCCGACGTCACCGGCAACGCCCTGCGGCAGCGGGGATCCGGAGGG GGAGGATGCGGGTACGGGTACAGCACCCCCGCCCCGAAGGCGCCCAGGCCCTCCTGCAGG TTCCTTCTCGACGACGACGAAGGCATGGACGAGGCGTTCCTGCGGGAGGTGGACGCCATT TGCGAGGAGCACGAGCGGTCCTCGGCCAGGAAGGATAAGGAGGCCGGCGAAGCGCCGCCA TCGATCCCCTCCGAACCGGAGAGCGGAGTGTCTGGAGATGCATTCCGGAAGGAGGAGAAT GCCATTGGTGAGGAGGGTGATGCTCAGCCTTTAGCCACGAGCCAGGAAGAAATGGAGGAT GCGGATGAAGAAGAAATCTGTGAACTGTGGTTTGGTGATGATTCACTTCCACCGGCCATT TCAATTGCCACAGGGGGTGGAGAGTTTGAGGATGCATTCTGGAACATCAGTGACATTACT GAGGAGGTGCACCATACAGGCTCTTCTGCCAAGTGCCAGGAGGATATGGACGGAAAAAAT AGCGATGGTCCTTCAGTTCCCTCAGTAATTTGCCATGAAGAGCGGGAAGGAGAGCTTGTC GATGCATTCTTGGAGGATCTTGATGCTATCCATCAGGGTGATGCTACCAAGGGCCAGGAG GAGCCACAGGAAACGGAACTAGAAATTGAGGAAAATGAAGGGTGTGTTCCAAAGAAGTAC TACGAATATTTGCAGTCCCTGAATGACAGGCAGAGGGAAGCTGCATGTAGTGATGTGACT ATTCCACTAATGATAGTTGCTGGTCCAGGAAGTGGAAAGACATCAACAATGGTTGGTCGG GTGCTCACACTGCTCAAAGAGGAATTTCCACCATCAAACATTCTTGCTATGACATTCACA ACTGCTGCTGCTTCTGAAATGCGGGATCGAATTGGGACAGTGGTGGGGAAGGCAGTTGCC AAGGAGATTGTAATAAGCACATTTCACTCATTCTGCTTGCAGCTTTGCAGGACCCATGCT GAAAAGCTAGGCCGCACATCTGAATTCATAATCTATGGAAATGGGCAGCAGAGGAGGGCT GTTATTGAGGCAGAGCGTCTATTGGAAAGTGACAAAAATAATGGTCTAGGAGATGCAAAT AAGAATTGCGATGGAGATATTAAAAATTCTTTCAAGGACAAAGCTAAGAAATGGCAGAAG TTTGTTACACAGGCAAAAGCTTCTGGTAGGACTCCCGAGGAGTATGAAAAGAAGGGGGAT TTGACAGGAGCTTCAATTCTTCGGCACTACAATGAAATATTAAGGTCTTGTAATGCTCTT GATTACCATGATTTTATTAATTCATCGATAACCCTTCTCACAAAGTTTCCTGAAGTATAC GACGAGTGCCGAAATACATGGCAGGCAATAGTAGTTGATGAGTTTCAGGATACAAGTGCT ATGCAATATTATCTTTTAAAGACACTAGCATCCCACAACCGCATAACTATTGTTGGTGAC GAAGATCAGTCCATCTTCAGTTTCAATGGTGCTGATGTCTCTGGCTTTGATTCATTTCGT AGAGATTTTCCAAATCACAAAGAGGTCAGATTGAGCAAGAACTATCGCTCTACACGGGCA ATTGTTGAAGCAGCAACAGCTTTAATTCACAACAACACTAAACGGCAAAGCCACAAACTT GCTGAGACCGACAATCCCTCTGGGAATAAGATCATTGTTAAGGAGTGCCACAGTGAAGAT TCACAATGTGCATTTGTTATTGACAAGATTATTGAAACCACATCTAGTTCAGTTGAAGGA TGTCATTTTGGCAAAATTGCTGTCCTATATCGCAGACAGATCACTGGCAAAGCATTCCAG GCGTCATTCCGCAACAGAAAAATTCCTTTTAATATTCATGGTGTGGCTTTCTACAGGAAA AAGGTTATCAAAGCAATTATGGCCATACTTAAAACTACATTACCAGGCTGTGATGATGAT GCCCCATGGCATCAAGCCTTCAAGGCCATTCTTCCTGGTGACAAGGAAGAAAAAAAGAAG ATTATACATCATATTGAAAAGATTTCATTGGCTAGAAAGTGTAGCTTCATATCGGCTGCT ACTGACATCTTCAGTGCAAAGGTCTCTGGTACCTTCAAAAGGGCCCAGATTACTCAAGGA AGAAAGGTTTTATCAGCCTTGGATAGCCTATCAAAACTTGTTGAAAGGGAACAATCAGTT TCAGTGGTCATTTCTTCTGCTGGAGATATGCTACCTCAGAAATACCTACTTGAAAAGCGT GCGATTGTTGATGCTGATGGGGGTAAATTATTAAATGAAGATAATGACATCAGATCAGTC CTTCAGTTTTTAATGGATGATGTGTCTGACTTCTTATCAACACATTTTTCTAGTTCAGTG GATACAAGCAAGACTGAGGAGAAAGGCTGTGCTTCTACACTTAAAGCCTTTATTGATTAT ATCTCTTTGAGAGAAACTGAAAACTTCAGATCACGAAAGGAGGAAAATAAAAACTCTATC ACATTAACAACTATCCACCAGTCAAAAGGTTTAGAGTGGGATGTTGTGTTTATCGTGCAG GCAAATGATTCAGAAATTCCTTTGTTGCATGAGTACAATGGCACTGTGAAAGAAGCTGGA AGCACACTGGAGGAGGAGAGAAGGCTATTCTATGTTGCAATGACACGAGCTCGAAAGAAA CTGTACATCTTACATGTCACGGTTGACTCTAATCGCCAGCTGCTGCAACCTTCACGCTTC CTCAGGGAGATTCCTGCTCACCTTCTTGAGGTACAGGGTGAGGGAACTGTGAGAAGAACT CCTGAACAGCCGGTGAACATTCCATTTGATCAACCTGAAGGAGATACATCAGTTGAAAGG CCTATGGTGGTACGGAATGAAACTTCACCTTTCCCAGAAATGGATCAGCCATGTCTTGCT AATGATTTCTTGAAGAGGTTTGAAATTGAGGATAGAGCAATAATTTCACATATATTTCAT CAATGGGCGAAGAAACAGGCATTTCAAAATCCAAAAAGGCTGCTTGATAAGATTGGTTTT GTTATTGATGAACGTTTACGAGGTAAAGGATACAAGCGCAAGGATGTATTGTGCAAGCTG AAATCATTCTTAAGTGGTGATGAAGCGTTTGGTTATGCACAATATGTTATCAAGTGGGAA CAGATTCCTATCGACAAGCGGAGCCATTTGATGAGAGAGAGACAGGAACATTTCCAAAAG CAGAGGATAGAGAACTCCATGGGTTCCTCAGAACCTACACCTAAGCAGATATCGTACCTC CGGAACCTGGGGTGCACCATCACACCCACGTCTCGCCTGCACGCGTCGCATCTTATCGAG AAGTACAAATCTCTATGA

Peptide Sequence

PEP ID	Os07t0492100-01
PEP Infomation	pep chromosome:IRGSP-1.0:7:18338217:18351636:-1 gene:Os07g0492100 transcript:Os07t0492100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA helicase, UvrD/REP type domain containing protein. (Os07t0492100-01)
Sequence	MSRWKENASPLPLHPGGSSSLLPRKRPPPSPPPPQPPCPPPRRPLADVTGNALRQRGSGG GGCGYGYSTPAPKAPRPSCRFLLDDDEGMDEAFLREVDAICEEHERSSARKDKEAGEAPP SIPSEPESGVSGDAFRKEENAIGEEGDAQPLATSQEEMEDADEEEICELWFGDDSLPPAI SIATGGGEFEDAFWNISDITEEVHHTGSSAKCQEDMDGKNSDGPSVPSVICHEEREGELV DAFLEDLDAIHQGDATKGQEEPQETELEIEENEGCVPKKYYEYLQSLNDRQREAACSDVT IPLMIVAGPGSGKTSTMVGRVLTLLKEEFPPSNILAMTFTTAAASEMRDRIGTVVGKAVA KEIVISTFHSFCLQLCRTHAEKLGRTSEFIIYGNGQQRRAVIEAERLLESDKNNGLGDAN KNCDGDIKNSFKDKAKKWQKFVTQAKASGRTPEEYEKKGDLTGASILRHYNEILRSCNAL DYHDFINSSITLLTKFPEVYDECRNTWQAIVVDEFQDTSAMQYYLLKTLASHNRITIVGD EDQSIFSFNGADVSGFDSFRRDFPNHKEVRLSKNYRSTRAIVEAATALIHNNTKRQSHKL AETDNPSGNKIIVKECHSEDSQCAFVIDKIIETTSSSVEGCHFGKIAVLYRRQITGKAFQ ASFRNRKIPFNIHGVAFYRKKVIKAIMAILKTTLPGCDDDAPWHQAFKAILPGDKEEKKK IIHHIEKISLARKCSFISAATDIFSAKVSGTFKRAQITQGRKVLSALDSLSKLVEREQSV SVVISSAGDMLPQKYLLEKRAIVDADGGKLLNEDNDIRSVLQFLMDDVSDFLSTHFSSSV DTSKTEEKGCASTLKAFIDYISLRETENFRSRKEENKNSITLTTIHQSKGLEWDVVFIVQ ANDSEIPLLHEYNGTVKEAGSTLEEERRLFYVAMTRARKKLYILHVTVDSNRQLLQPSRF LREIPAHLLEVQGEGTVRRTPEQPVNIPFDQPEGDTSVERPMVVRNETSPFPEMDQPCLA NDFLKRFEIEDRAIISHIFHQWAKKQAFQNPKRLLDKIGFVIDERLRGKGYKRKDVLCKL KSFLSGDEAFGYAQYVIKWEQIPIDKRSHLMRERQEHFQKQRIENSMGSSEPTPKQISYL RNLGCTITPTSRLHASHLIEKYKSL

Transcript Sequence

Transcript ID	Os07t0492100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:18338217:18351636:-1 gene:Os07g0492100 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA helicase, UvrD/REP type domain containing protein. (Os07t0492100-01)
Sequence	CCAAAAAACCCCCCCAAACCCTCGCCGCACCGCCGTCGATCGCCGCGGCGGTCGCTGGGG GGCAATGTCGCGCTGGAAGGAGAACGCCTCCCCTCTCCCCCTCCACCCCGGCGGCTCCTC CTCCCTCCTCCCCCGCAAGCGCCCTCCCCCATCCCCGCCCCCTCCGCAGCCCCCGTGCCC GCCGCCGCGCCGCCCGCTCGCCGACGTCACCGGCAACGCCCTGCGGCAGCGGGGATCCGG AGGGGGAGGATGCGGGTACGGGTACAGCACCCCCGCCCCGAAGGCGCCCAGGCCCTCCTG CAGGTTCCTTCTCGACGACGACGAAGGCATGGACGAGGCGTTCCTGCGGGAGGTGGACGC CATTTGCGAGGAGCACGAGCGGTCCTCGGCCAGGAAGGATAAGGAGGCCGGCGAAGCGCC GCCATCGATCCCCTCCGAACCGGAGAGCGGAGTGTCTGGAGATGCATTCCGGAAGGAGGA GAATGCCATTGGTGAGGAGGGTGATGCTCAGCCTTTAGCCACGAGCCAGGAAGAAATGGA GGATGCGGATGAAGAAGAAATCTGTGAACTGTGGTTTGGTGATGATTCACTTCCACCGGC CATTTCAATTGCCACAGGGGGTGGAGAGTTTGAGGATGCATTCTGGAACATCAGTGACAT TACTGAGGAGGTGCACCATACAGGCTCTTCTGCCAAGTGCCAGGAGGATATGGACGGAAA AAATAGCGATGGTCCTTCAGTTCCCTCAGTAATTTGCCATGAAGAGCGGGAAGGAGAGCT TGTCGATGCATTCTTGGAGGATCTTGATGCTATCCATCAGGGTGATGCTACCAAGGGCCA GGAGGAGCCACAGGAAACGGAACTAGAAATTGAGGAAAATGAAGGGTGTGTTCCAAAGAA GTACTACGAATATTTGCAGTCCCTGAATGACAGGCAGAGGGAAGCTGCATGTAGTGATGT GACTATTCCACTAATGATAGTTGCTGGTCCAGGAAGTGGAAAGACATCAACAATGGTTGG TCGGGTGCTCACACTGCTCAAAGAGGAATTTCCACCATCAAACATTCTTGCTATGACATT CACAACTGCTGCTGCTTCTGAAATGCGGGATCGAATTGGGACAGTGGTGGGGAAGGCAGT TGCCAAGGAGATTGTAATAAGCACATTTCACTCATTCTGCTTGCAGCTTTGCAGGACCCA TGCTGAAAAGCTAGGCCGCACATCTGAATTCATAATCTATGGAAATGGGCAGCAGAGGAG GGCTGTTATTGAGGCAGAGCGTCTATTGGAAAGTGACAAAAATAATGGTCTAGGAGATGC AAATAAGAATTGCGATGGAGATATTAAAAATTCTTTCAAGGACAAAGCTAAGAAATGGCA GAAGTTTGTTACACAGGCAAAAGCTTCTGGTAGGACTCCCGAGGAGTATGAAAAGAAGGG GGATTTGACAGGAGCTTCAATTCTTCGGCACTACAATGAAATATTAAGGTCTTGTAATGC TCTTGATTACCATGATTTTATTAATTCATCGATAACCCTTCTCACAAAGTTTCCTGAAGT ATACGACGAGTGCCGAAATACATGGCAGGCAATAGTAGTTGATGAGTTTCAGGATACAAG TGCTATGCAATATTATCTTTTAAAGACACTAGCATCCCACAACCGCATAACTATTGTTGG TGACGAAGATCAGTCCATCTTCAGTTTCAATGGTGCTGATGTCTCTGGCTTTGATTCATT TCGTAGAGATTTTCCAAATCACAAAGAGGTCAGATTGAGCAAGAACTATCGCTCTACACG GGCAATTGTTGAAGCAGCAACAGCTTTAATTCACAACAACACTAAACGGCAAAGCCACAA ACTTGCTGAGACCGACAATCCCTCTGGGAATAAGATCATTGTTAAGGAGTGCCACAGTGA AGATTCACAATGTGCATTTGTTATTGACAAGATTATTGAAACCACATCTAGTTCAGTTGA AGGATGTCATTTTGGCAAAATTGCTGTCCTATATCGCAGACAGATCACTGGCAAAGCATT CCAGGCGTCATTCCGCAACAGAAAAATTCCTTTTAATATTCATGGTGTGGCTTTCTACAG GAAAAAGGTTATCAAAGCAATTATGGCCATACTTAAAACTACATTACCAGGCTGTGATGA TGATGCCCCATGGCATCAAGCCTTCAAGGCCATTCTTCCTGGTGACAAGGAAGAAAAAAA GAAGATTATACATCATATTGAAAAGATTTCATTGGCTAGAAAGTGTAGCTTCATATCGGC TGCTACTGACATCTTCAGTGCAAAGGTCTCTGGTACCTTCAAAAGGGCCCAGATTACTCA AGGAAGAAAGGTTTTATCAGCCTTGGATAGCCTATCAAAACTTGTTGAAAGGGAACAATC AGTTTCAGTGGTCATTTCTTCTGCTGGAGATATGCTACCTCAGAAATACCTACTTGAAAA GCGTGCGATTGTTGATGCTGATGGGGGTAAATTATTAAATGAAGATAATGACATCAGATC AGTCCTTCAGTTTTTAATGGATGATGTGTCTGACTTCTTATCAACACATTTTTCTAGTTC AGTGGATACAAGCAAGACTGAGGAGAAAGGCTGTGCTTCTACACTTAAAGCCTTTATTGA TTATATCTCTTTGAGAGAAACTGAAAACTTCAGATCACGAAAGGAGGAAAATAAAAACTC TATCACATTAACAACTATCCACCAGTCAAAAGGTTTAGAGTGGGATGTTGTGTTTATCGT GCAGGCAAATGATTCAGAAATTCCTTTGTTGCATGAGTACAATGGCACTGTGAAAGAAGC TGGAAGCACACTGGAGGAGGAGAGAAGGCTATTCTATGTTGCAATGACACGAGCTCGAAA GAAACTGTACATCTTACATGTCACGGTTGACTCTAATCGCCAGCTGCTGCAACCTTCACG CTTCCTCAGGGAGATTCCTGCTCACCTTCTTGAGGTACAGGGTGAGGGAACTGTGAGAAG AACTCCTGAACAGCCGGTGAACATTCCATTTGATCAACCTGAAGGAGATACATCAGTTGA AAGGCCTATGGTGGTACGGAATGAAACTTCACCTTTCCCAGAAATGGATCAGCCATGTCT TGCTAATGATTTCTTGAAGAGGTTTGAAATTGAGGATAGAGCAATAATTTCACATATATT TCATCAATGGGCGAAGAAACAGGCATTTCAAAATCCAAAAAGGCTGCTTGATAAGATTGG TTTTGTTATTGATGAACGTTTACGAGGTAAAGGATACAAGCGCAAGGATGTATTGTGCAA GCTGAAATCATTCTTAAGTGGTGATGAAGCGTTTGGTTATGCACAATATGTTATCAAGTG GGAACAGATTCCTATCGACAAGCGGAGCCATTTGATGAGAGAGAGACAGGAACATTTCCA AAAGCAGAGGATAGAGAACTCCATGGGTTCCTCAGAACCTACACCTAAGCAGATATCGTA CCTCCGGAACCTGGGGTGCACCATCACACCCACGTCTCGCCTGCACGCGTCGCATCTTAT CGAGAAGTACAAATCTCTATGACTTTTCACTGCTTGAACCTGCAGGGGACACATGATTTC AAGCTCAGTCTCAGAATTGGGACCATATATACAGCAACGCTGGTGAAAGTTCCTCATATT AACTGTACATGCTGTACATATCGATGTACTTTTCCCGTGGACATGGTGTGGTTAGAGCAA ACGTCTTGTTACATTACCAGGCTGTTCTTGGGCCACAAGGGCCAACCAAGAAACGAACCG GGCCTTCTCTTTGGGGAATCTGGCTCGGCCCACAAAATAACCAGCTATGGGAGACTCAGT CACATCCCTCATGCAACGTACATCCTCCGTCTTGTAAAAAAAATATCAACTTCTAGCTAT GTACTTTATGGGATGGATTGAGTACGGGTTATGTGATCATTGCCTCTTGTTTTTGCGATG ATCCTTGTACGCTAGTGCCTAGTGGTATAAAATGAGCTTTGTATATAATTTGGTCCATTT TTTTTAAAAAAATAAACCTGCAATAAAACGTTTTCT