Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0489800-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:18149111:18150695:1 gene:Os07g0489800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-grasp fold, ferredoxin-type domain containing protein. (Os07t0489800-01)
Sequence

ATGGGAGCGACCATGCAGCTCGTCGTCGGCCTCGCCGGCGTCGCCTCCTCCTCCCCCCGC
CTCGCGCCACACTGCGCCGTGGCCACGGCCACCACCACCAGCAGCTGCAGCGTCAGGAAA
CAGAGCTGCAGCTGCTGCGGCGCCGCCCATCTGCCACGGCGGCTGCAGCACAAACAGCAG
AGGAGGTGCGGGATTCGTGTCCGCGCCGTCGAGACGGACGCCGCCGCCGGCGGCGAGGCG
AAGGCCGCACCGGAGGAGCCGCCGAGCGTCGACTTCGCGTTCGTCGCCCCGCGGCTGCTG
CCGGACGGGACGCCGGACGTGCACTACCGGACGGCGTGCGGCGGGCAGAAGCTCCGCGAC
ATCATGCTCGACAACTACATCGACCTCTACGGGCCTTACGATAAGCTTCTGCTCAACTGC
GAGGGAGGTGGAGAGTGCGGGACCTGCATCGTCGAGGTAGTTGAAGGCGGTGAACTGCTT
TCCCCCAAAACTGATGTTGAGAAGGAATTGCTGAAAAGGAAACCAAAGACATGGAGATTG
GCGTGCCAGGCTACTGTCGGCAATCCAGATTCAACTGGACAGATGGTCATTCAGCAATTG
CCGGAGTGGAAGATACATGAGTGGGACAAGTAG

Peptide Sequence

PEP ID

Os07t0489800-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:18149111:18150695:1 gene:Os07g0489800 transcript:Os07t0489800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-grasp fold, ferredoxin-type domain containing protein. (Os07t0489800-01)
Sequence

MGATMQLVVGLAGVASSSPRLAPHCAVATATTTSSCSVRKQSCSCCGAAHLPRRLQHKQQ
RRCGIRVRAVETDAAAGGEAKAAPEEPPSVDFAFVAPRLLPDGTPDVHYRTACGGQKLRD
IMLDNYIDLYGPYDKLLLNCEGGGECGTCIVEVVEGGELLSPKTDVEKELLKRKPKTWRL
ACQATVGNPDSTGQMVIQQLPEWKIHEWDK

Transcript Sequence

Transcript ID

Os07t0489800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:18149111:18150695:1 gene:Os07g0489800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-grasp fold, ferredoxin-type domain containing protein. (Os07t0489800-01)
Sequence

GCCATCGCGGCTCATCCAAAGCTATAGCTTAGCTCTGCACACCTGCAGCTCGTCGTCGGC
GATGGGAGCGACCATGCAGCTCGTCGTCGGCCTCGCCGGCGTCGCCTCCTCCTCCCCCCG
CCTCGCGCCACACTGCGCCGTGGCCACGGCCACCACCACCAGCAGCTGCAGCGTCAGGAA
ACAGAGCTGCAGCTGCTGCGGCGCCGCCCATCTGCCACGGCGGCTGCAGCACAAACAGCA
GAGGAGGTGCGGGATTCGTGTCCGCGCCGTCGAGACGGACGCCGCCGCCGGCGGCGAGGC
GAAGGCCGCACCGGAGGAGCCGCCGAGCGTCGACTTCGCGTTCGTCGCCCCGCGGCTGCT
GCCGGACGGGACGCCGGACGTGCACTACCGGACGGCGTGCGGCGGGCAGAAGCTCCGCGA
CATCATGCTCGACAACTACATCGACCTCTACGGGCCTTACGATAAGCTTCTGCTCAACTG
CGAGGGAGGTGGAGAGTGCGGGACCTGCATCGTCGAGGTAGTTGAAGGCGGTGAACTGCT
TTCCCCCAAAACTGATGTTGAGAAGGAATTGCTGAAAAGGAAACCAAAGACATGGAGATT
GGCGTGCCAGGCTACTGTCGGCAATCCAGATTCAACTGGACAGATGGTCATTCAGCAATT
GCCGGAGTGGAAGATACATGAGTGGGACAAGTAGCTGAATTTTAACTAGCGCTGCTGTGT
GGCGGCAATACAGTAGATTAATTTCACCGACCATGGAGAAAAAGAGAGAGAGCCTAGCAC
ATGATCAGGAGAAGAAACATTGGAAGACGATTAATGCTGTACATCCAAACTCCATGTAAA
ATTGTATACGTCTCCTGTAGCTACCAAATGGTCAGCATGAGTGTAATCAGGGATTGAAAT
TCGCTAATCTCAGACCCCCACAAGC