Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0485000-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:17816192:17820602:1 gene:Os07g0485000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TPP10 description:Similar to Trehalose-6-phosphate phosphatase. (Os07t0485000-01)
Sequence

ATGGGTTCCTGCGGTAACGGTAGAAGCTCTGAATATGATGATCCTGCATCATTAGAGAAG
ATGGAGGAACTGGTTTTACCTCTGAAATTGATGCCCTTACACACCAATGGCCGGTTGTAT
GACATGAGGTTGTCCTCACCTACTGCTACCTGTGTGATCAATAGTTCATCTGGTTCATTC
GACCCGATCTACCGAGCTTGGACGAAGAAGTATCCTTCAGCTCTAAATGCCTTTGACCAC
ATTGTTGCCTATGGCAAAGGGAAGAAGATAGCGCTGTTTTTGGACTACGACGGTACACTG
TCGCCAATTGTCGATGAACCTGACAATGCTATCATGTCTGACCAGATGCGCGAGGTGGTG
AGGAATGCTGCCTTGCATCTACCCACTGCGATTATCAGTGGAAGGTCTCGTGATAAGGTG
TTTGATTTTGTTAAACTAACAGAATTGTACTATGCTGGTAGCCATGGAATGGACATCATG
GGTCCAGTTGGGGAACATGATTCAGTTACTAACCATAGGAGCTCCATTAACTCAAATAGA
AAGCAGGGCAAGGGAGTGAAGATCTTCCAGGCTGGTACTGAATTCTTACCAATGATCAAT
GAGGTTTTTAGATTGCTCATCGATAAGACAAAGGCAATCGACGGTGTGAAAATTGAGAAC
AACAAGTTCTGTGTATCGGTGCACTACCGCAATGTTGAGGAGAAGAATTGGCAACTTGTT
TCTCAATGCACAAATGATGTCCTAAAAGTCTACCCTCGCCTCCGATTGACTCATGGACGA
AAAGTTTTGGAAATTCGTCCAGTGATAGACTGGAACAAGGGGAAGGCTGTGGAGTTCTTG
CTGGACTCCCTAGATCTAGCTAGCTGTAAAAATGTTCTCCCTATTTACATCGGGGATGAT
TGTACCGACGAGGATGCTTTTAAGGTTCTTCGTGACGATAAAAGGGGTTTCGGGATTCTG
GTGTCATCTGTACCAAAGGATTCTCATGCCCTATATTCTCTGATTGATCCATCTGAGGTT
ATGGAATTCTTGAAAAGACTAGTGATGTGGAAGAACGAAGAAGCATCACATAATAAGTAG

Peptide Sequence

PEP ID

Os07t0485000-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:17816192:17820602:1 gene:Os07g0485000 transcript:Os07t0485000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TPP10 description:Similar to Trehalose-6-phosphate phosphatase. (Os07t0485000-01)
Sequence

MGSCGNGRSSEYDDPASLEKMEELVLPLKLMPLHTNGRLYDMRLSSPTATCVINSSSGSF
DPIYRAWTKKYPSALNAFDHIVAYGKGKKIALFLDYDGTLSPIVDEPDNAIMSDQMREVV
RNAALHLPTAIISGRSRDKVFDFVKLTELYYAGSHGMDIMGPVGEHDSVTNHRSSINSNR
KQGKGVKIFQAGTEFLPMINEVFRLLIDKTKAIDGVKIENNKFCVSVHYRNVEEKNWQLV
SQCTNDVLKVYPRLRLTHGRKVLEIRPVIDWNKGKAVEFLLDSLDLASCKNVLPIYIGDD
CTDEDAFKVLRDDKRGFGILVSSVPKDSHALYSLIDPSEVMEFLKRLVMWKNEEASHNK

Transcript Sequence

Transcript ID

Os07t0485000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:17816192:17820602:1 gene:Os07g0485000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TPP10 description:Similar to Trehalose-6-phosphate phosphatase. (Os07t0485000-01)
Sequence

GGTTGATCGAGGTGAGCGTTTCCTGACCTACTTGCTCGGATTAATTACAAATTGATTTGA
TCACGTAGATAATTACATCATCATCATATTGATGGATGGATGCTTGCACATATATGCATG
CGTTTTGAATCTGGTGATGTAATGATATCCAATTAATAATCTTGCTGCAACACGAAAGCT
CAGCCAGTTTAATTGATTTGATTTAGTTAATGCCATCGATCTCAGGCTTGATTATCGATT
GGCTGTTGAATGCACGGATTAATCAAATAGGTTGAAGGCACGCAATGCAAAATTCCAAAT
TGATTGTGGACCTCTTCGGTTTCTCCTTGTATAAGACCTTGAATTTAGAAATTATTAGTG
AGCTATCGAAAGTTTTCAGTGGCATCACATATTATCTGCTTACTTGGAACATATAGAAAA
ATAGAATTATTAATTAATAAATTAATTGTATTGAGCATTATACTTCCTTAGTCTGAGAGT
ATATAGCATTGGGCATAAAGTTAGTATTAACTATTCACCATGTAACTAGCTTCTTAGTAA
AGGTACAAATTAAGGACTGAAGAGAAACTCCAGACTTTTAATCTTCAAACTGAAGGCAAG
TAATACATTTTCAGCCCTTCCATTTAGTTCCTTGGAGGATCAAATTCAAATGTTGCGACG
GATGAAGACGCACGAAATTTGATGCTTTTATCGCACGTTCATGTAGTATTTGGTCAATCG
ATCTCTGCATCATGCCTTGACCAAGATGCATATTTAGTTTGATGATCTCTGTTGCTTCCA
ATTGCACTCCATTAATTGTTTGAACTAATAGTCGTTTTGCTTCATGTAATCGAATGCTTC
CTGCGTTCGATTGGTGAGAGAAGTGCACTCCAATGCTGTACCAACAGTACTCTTGGGTTT
TTCTCTTAGGAGAGCTTTATTTAGAGTGAAAGGGACTTCCTAATTAAGATTTCTTTATTT
TGAAAGAAGCTAGTAATTAAGATTTCTTAACATATGCACACGTGAAGTTATAAAACATGA
CTCAAATCTGATGTTGATGTGTGTTCGACCAAGTCCCTAATCAGTTTTTGCACTTTTTCT
TCTGATTTCTCACGCCAACTGATCAATTAAGGCAAGTAGGATTTTAGTTGTGTTCTTTTC
TTATTGTTTTCCTTTCTCTTGCTTTTCGCTTTCTCACCTCCTACCTCCTTGGAGACAGTC
CACAATTGTGAATTTTCAACATTAGAAAAATAATCACAATTTTGTGGAAATGATTGAAAA
ACTAATTAATAGGTTGCATTTCACATGAACATAGTTAATTAGAGAACAAAATGCATACAC
TAGGTGTTAGAGCAGTACAAAAGTTATAGAAGATGTCACTGCTTACTGCATGAGTATCTT
TCTTCACAATCCCATTCCATCATAAATATTGCCTAAACAATTCCACTCAACCTTGTTGCT
TGTTCAACTTTAATTCTTTCATAACTTGATATGAAGGTCAGGACAATTACTGTAGACTAG
TTTCTTCATGGTTGCACGCTGAATAATCGTACACAGATGCCCTTGCTGTCTCTGAATTCT
CAAACACTGAACATATATTGTAGAACATTTTACACCTATTCCTGTCTGATCTCTTGCTGT
GTGTGTACGGAGCATGCTGCCGTTCTTCCCAAGACTTTGTGTCTCAATTGGTTATTTTTG
ACTTGAAGCGATCCGTTTCGGTAGTCCCTGAGGCAGCTAGCGTAAGCCTCTTTTGACTTC
CAAGCACACAAGTTACTTGCTGCCTCAGATTCATCAGCAAGTCACTAGTACTTTTCGGTA
TCTAGATGAAGCATATATATAAACCACAAGAAAAGCGGCTGCCCATTTGTGTTCTGATCA
TGAGGAGATTCAGGTGGTTTCTTGAAAGGATGTGAATCTGTGGTTGCAAGATACTGAAGA
AAGTAATAAGGTGGTTCTTCAATCTTCATAGGCTTCAGAGTTCAGAGTTGAGTTAATGTT
TTTGCAAACAAGGTGTCTGCTGACAGTTTGACAGTAAAAAGATCTGTATATATGGGTTCC
TGCGGTAACGGTAGAAGCTCTGAATATGATGATCCTGCATCATTAGAGAAGATGGAGGAA
CTGGTTTTACCTCTGAAATTGATGCCCTTACACACCAATGGCCGGTTGTATGACATGAGG
TTGTCCTCACCTACTGCTACCTGTGTGATCAATAGTTCATCTGGTTCATTCGACCCGATC
TACCGAGCTTGGACGAAGAAGTATCCTTCAGCTCTAAATGCCTTTGACCACATTGTTGCC
TATGGCAAAGGGAAGAAGATAGCGCTGTTTTTGGACTACGACGGTACACTGTCGCCAATT
GTCGATGAACCTGACAATGCTATCATGTCTGACCAGATGCGCGAGGTGGTGAGGAATGCT
GCCTTGCATCTACCCACTGCGATTATCAGTGGAAGGTCTCGTGATAAGGTGTTTGATTTT
GTTAAACTAACAGAATTGTACTATGCTGGTAGCCATGGAATGGACATCATGGGTCCAGTT
GGGGAACATGATTCAGTTACTAACCATAGGAGCTCCATTAACTCAAATAGAAAGCAGGGC
AAGGGAGTGAAGATCTTCCAGGCTGGTACTGAATTCTTACCAATGATCAATGAGGTTTTT
AGATTGCTCATCGATAAGACAAAGGCAATCGACGGTGTGAAAATTGAGAACAACAAGTTC
TGTGTATCGGTGCACTACCGCAATGTTGAGGAGAAGAATTGGCAACTTGTTTCTCAATGC
ACAAATGATGTCCTAAAAGTCTACCCTCGCCTCCGATTGACTCATGGACGAAAAGTTTTG
GAAATTCGTCCAGTGATAGACTGGAACAAGGGGAAGGCTGTGGAGTTCTTGCTGGACTCC
CTAGATCTAGCTAGCTGTAAAAATGTTCTCCCTATTTACATCGGGGATGATTGTACCGAC
GAGGATGCTTTTAAGGTTCTTCGTGACGATAAAAGGGGTTTCGGGATTCTGGTGTCATCT
GTACCAAAGGATTCTCATGCCCTATATTCTCTGATTGATCCATCTGAGGTTATGGAATTC
TTGAAAAGACTAGTGATGTGGAAGAACGAAGAAGCATCACATAATAAGTAGATTATAAAT
ATATCTGATGTTTACTCTAGGGTAGATTTCTGAATTCTGACAAAGAGAATAAGCAGAAGG
GCAACAGAATTAACTTGGACATAGTGGACAGTTGTACATCATATAGTTAATCCATTTTCT
TAGCCTAGCAAGTGGCAAAATAAAAGTAATTGCCATGTTGTACAAGAATGCGAAGCATTC
TGCACAAGTCCAGTTCTTTGAATAATGGTCTCAGTTGTAGAATGGTGTAACTTGTTAATG
AACTGTGATATAAATTTTTGGGCT