Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0476500-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:17254973:17260556:-1 gene:Os07g0476500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 21-4 description:Cyclophilin-like domain containing protein. (Os07t0476500-01)
Sequence

ATGGCGAGGATAAAGCCGAAGCAATTGCTAATTCAAAGCAAGACGAAGAAGGCCCCAACA
CGGATCAGTTACTCCACTATCGTTACTTGGAACCTAATTGTTATCTTGGTTGCGCTATCC
CTCTATGCTACCTACAGGCATTGGCATCACAGGCCAATGCTCGAGACTGAAATGGATCTC
CCTCGTGCTGAGCATGTTGGAAGATCTGAGGATTCCACGAAGACTAGTAGACCAAGCTAT
GCGGTTATTGATACTGCCAAAGGCTCAATTACTATAGAAATTTACAAAGATGCTTCTGCT
GATGTTGTGGATAGATTTGTTAGCTTGTGCAAGAGTAACCATTTTAAAGGAATGCCGTTT
CGTCATGTCATCAAAAACTTTGTAATTCAAGGGGGTGATTTCGATTTCAATGGTGCTGCC
CAGGAATGGATACTGAAAGCCAAAGCCAGTGGAGAAAACGCTCTAAGTCCAAAGCACGAG
GCATTCATGATCGGGACTACGAAGAATCCTAATAATAAAGGATTTGATCTTTTTATCACA
ACTGCTCCAATTCCTGACTTGAATGACAAGCTTGTTGTATTTGGGCAAGTTATCAATGGA
CAAGATATTGTTCAGGAGATCGAAGAAGTTGATACTGATGAGCATTACCAGCCAAAAACC
CCTATCGGCATACTCAACATCACGCTAAAACAGCAAGCTTTGAGCTGA

Peptide Sequence

PEP ID

Os07t0476500-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:17254973:17260556:-1 gene:Os07g0476500 transcript:Os07t0476500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 21-4 description:Cyclophilin-like domain containing protein. (Os07t0476500-01)
Sequence

MARIKPKQLLIQSKTKKAPTRISYSTIVTWNLIVILVALSLYATYRHWHHRPMLETEMDL
PRAEHVGRSEDSTKTSRPSYAVIDTAKGSITIEIYKDASADVVDRFVSLCKSNHFKGMPF
RHVIKNFVIQGGDFDFNGAAQEWILKAKASGENALSPKHEAFMIGTTKNPNNKGFDLFIT
TAPIPDLNDKLVVFGQVINGQDIVQEIEEVDTDEHYQPKTPIGILNITLKQQALS

Transcript Sequence

Transcript ID

Os07t0476500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:17254973:17260556:-1 gene:Os07g0476500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 21-4 description:Cyclophilin-like domain containing protein. (Os07t0476500-01)
Sequence

CTTTTCCAACCCAACCTCAAACACAACCAATCCACCTCCGATTCCTTCATCCGCCGCCAC
CGCCGCCGTCGCCGCCGCCGGGATCCCGCCCGCAACCGCACCGCGGCGGCTCCTTCCCTT
CCTCCAGGTACCAACCAGATTGTGGGATCTTCCTAGAGAGCGCTGTTGTCCTGCACGAGT
AGAATAGCAGATGGCGAGGATAAAGCCGAAGCAATTGCTAATTCAAAGCAAGACGAAGAA
GGCCCCAACACGGATCAGTTACTCCACTATCGTTACTTGGAACCTAATTGTTATCTTGGT
TGCGCTATCCCTCTATGCTACCTACAGGCATTGGCATCACAGGCCAATGCTCGAGACTGA
AATGGATCTCCCTCGTGCTGAGCATGTTGGAAGATCTGAGGATTCCACGAAGACTAGTAG
ACCAAGCTATGCGGTTATTGATACTGCCAAAGGCTCAATTACTATAGAAATTTACAAAGA
TGCTTCTGCTGATGTTGTGGATAGATTTGTTAGCTTGTGCAAGAGTAACCATTTTAAAGG
AATGCCGTTTCGTCATGTCATCAAAAACTTTGTAATTCAAGGGGGTGATTTCGATTTCAA
TGGTGCTGCCCAGGAATGGATACTGAAAGCCAAAGCCAGTGGAGAAAACGCTCTAAGTCC
AAAGCACGAGGCATTCATGATCGGGACTACGAAGAATCCTAATAATAAAGGATTTGATCT
TTTTATCACAACTGCTCCAATTCCTGACTTGAATGACAAGCTTGTTGTATTTGGGCAAGT
TATCAATGGACAAGATATTGTTCAGGAGATCGAAGAAGTTGATACTGATGAGCATTACCA
GCCAAAAACCCCTATCGGCATACTCAACATCACGCTAAAACAGCAAGCTTTGAGCTGATA
GCTTGTTGTCCTTACCTGAAAATGACTTATCTGTACTCCAAGAGGGTCCATACATCGCCT
CCAATTGCTGCTGAAATTGATTATGATTATGGCTTCCTCTAGAAGCCCATGGGTTGCAAA
GAAAGAAGGCGCTTAATCTTGCCTGGCAGCTAAAAGCTTCTTCCGTCTCATGGAGTAGTT
GTGTATAAATTTATCCCTGGTGTCATTCGGCTGTCAGTTTTTGCAGGCATTACAGTGTAT
TTTGATGCTTGGTTGTTTCATTGTAAATTTGAAGCCCATTTGGATCATGAATCATAGAAC
TTGGAATTCATAGTT