Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os07t0476200-02
CDS Infomation	cds chromosome:IRGSP-1.0:7:17230466:17245273:-1 gene:Os07g0476200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide TPR-1 domain containing protein. (Os07t0476200-01);Similar to PAF1 complex component. (Os07t0476200-02);Similar to PAF1 complex component. (Os07t0476200-03)
Sequence	ATGGCTAGCGTATACATCCCGGTGCAGGGGACGGAGGAGGAGGTGCGGGTGGCGCTGGAC CAGCTCCCCGCCGACGCCTCCGACATCCTCGACATCCTCAAGGCCGAGCAGGCCCCGCTC CACCTCTGGCTCATCATCGCGAGAGAATACTTCAAGCAAGGAAAGATAGAACAGTTCCGA CAGATTCTAGAGGAAGGATCAGGGCCAGAAATTGATGAATATTATGCTGATGTGAAATAT GAGAGAATAGCTATCCTTAATGCTTTGGGCGCTTTCCATACTTTCCTGGGGAAGGTTGAG AGAGCACAACAGAAGGAAGTCCATTTCAAAGAAGCAACTCAATGCTACAATAGGGCATCA AGGATAGATGAAACTGAACCTTCAACATGGATCGGAAGAGGTCAACTCTGTGTGGTCAAG CACGATTTGCAAATGGCATCTGATTCATTCAAGATTGTATTGGATGAAGATGGAAGCAAT TTTCCAGCTTTACTTGGTCAGGCCTCTGTTTATTTCCTGATGGGTGACTCAGAGCAGCAA CACAAGAAAGCTCTGGACTATTATAGGAACTCACTGGATCTCTATAAGAGAGCCCTGCGG GCCTATACCAGCTGTCCTGCTGCTGTAAGGCTTGGTATAGCATTTTGCCGATACAAACTT GGTCAGTCAGATAAAGCTCGACAAGCTTTTCAACGCGTTCTGCAGTTGGACCCTGAAAAT ATTGATGCTTTAGTAGCACTGGCAATCATGGACTTGCAAACAAATGAAGCTGGTGGAATT CGCAGAGGAATGGAGAAAATGAGAAGAGCTTTTGAAATTTATCCTTATTGCACATTGGCA CTCAACCACCTAGCAAACCATTATTTCTTTACTGGCCAGCATTTTGTGGTTGAACAACTG ACGGAGACTGCTCTCTCTTCAAGTAATCATGGACTGCTGAAATCACATGCTTTCTATAAC TTAGCCAGATCGTACCACAGTAAGGGTGATATTGAGACTGCTGGAAGGTATTATATGGCA TCTGTCAATGAAATCAGTAAGCCACAGGACTTTGTGTTGCCATTCTTTGGACTTGGTCAG ATACAATTAAAATTTGCAGACTACAAAAGTTCATTAGCTAGCTTTGAGAAAGTGTTGGAG GTGCACCCAGAAAATTGTGAAAGTTTAAAGGCTATTGGGCACATATATGCAAAGTCAGGT GAGAATGACAAAGCTATAGAAACCTTCAAGAAGGTTACCCGGATTGATCCAAAAGATCAT CAGGCATTTATGGAGCTAGGTGAATTATTGGTACAATCTGATTGGGCTACTGCTATGGAA TACTTAAAAACAGCTCGGAATCTCCTAAAGAAGGCAGGAGAGAAAATACCCATTGAATTG CTCAATGGAATTGGACTACTTCATTTTGAGAAGGGAGAGCTTGAGATGGCTGAACAAAGT TTTAAGGAAGCACTTGGAGATGGCTTTTGGGTTTCAATTATAGATGGCAGTGTAGGTAGC TCCGTGGTTAACTGGAGTATTCAGTATAGGGACCAGAGTTTTTTTCAACAACTTGAAGAA GAGGGAACACCTCTTGAATTACCTTGGGATAAGGTCACTACATTGTTTAACTATGCAAGA TTGTTTGAAGAGCTCCATGATACTGTGAAAGCCAGTCTCTTTTACCGCCTCATTATTTTC AAGTATCCAGACTACATTGATACTTATCTTAGGTTAGCAGCTATTGCAAAAGAAAAAAAC AATCTCCAACTGAGCATTGAGCTGATAGGTGATGCTCTAAAGATAGATGATAAGTATCCA AATGCACTTTCTATGCTTGGAAGTCTTGAACTCCAAGGTGATGAAACCTGGCTTACTGCA AAGGAGCATTTCCGTGAAGCTAAAGATGCTTCTGAGGGAAAAGACACATACTCTATGCTT CAATTGGGGAACTGGAATTACTTTGCTGCTAATCGCCCTGAGAAAAAGGCCCCAAAATTT GAGGCCACTCATAGGGAGAAAGCCAAGGAACTGTATTCAAATGTACTAAAGCAGCACCAT GGTAATATGTTTGCTGCAAATGGTATTGGGATCTTATATGCTGAGAAAGCCCAATGGGAT ATTGCCAAGGAGTTATTTACACAGGTACATGAAGCTGCTTCAGGAAGTATATTTGTCCAG ATGCCTGATGTTTGGATAAATTTGGCTCATATATATTTTGCTCAAGGTTTTTTTCAGCAA GCTGTGAAAATGTACCAAAACTGCCTGCGGAAGTTCTTCTACAACACAGATGCAACTATA CTTCTATATCTTGCCCGGACACACTATGAAGCTGAACAATGGCAAGACTGCAGGAAAACA TTGCTGAGAGCTATTCATTTGGCTCCATCAAATTATTTATTGCGATTCAATGTAGGTGTT TCGATGCAGAAATTCTCAGCTTCAACTCTACAGAAGACAAAACGAACAGTTGATGAAGTT CGTGCGACGGTCTCTGAGCTTCAGAATGCTATTAGAGTATTCAGTCTATTGTCTGTTGCA TCTACATACCATTCCCATGGTTTTGATGAGAGAAAAATAGAAACTCATATTGAGTACTGC AAACATTTGCTTGATGCTGCTAAGGTTCATCGTGATGCAGCTGAGCAGGCTGAGCAGCAG AATAAGCAAAAAATGGAAGTTGCTCGACAAATTGCTTTGGCTGATGAAGCTCGCCGCAAG GCTGAAGAACAGAGGAAGGCCCAGTTAGAAAGAAGGAAGCAAGAGGACGAGCTAAAGCAA GTAATGCAACAGGAGCAACACTTTGAGCGTGTCAAGGAGCAATGGAAAACCTCAAGTAAC ACTCCTGGCAAGAGAAAAGATAGGTCTAAGCATGAAGATGAAGAGGGGGGAGGTGAAAAG AGGAGGAAGAAGGGTGGTAGGAGAAGGAAGGATCAGAAGACAAAGGCACACTATGGGGAA GAGGAAGAAGACGAATATAGAGATGAACCAGAAGCAGAAGATGATTATGCAAACACGGCG AGGAGTAACGATGGTGGCGATTCAGAGAAAGCCCCAGGTCACCTTCTTGCTGCTGCAGGT CTTGAAGATTCTGATGCTGAAGAAGATGACATGGGACACCCTCAATCTGCCATAGAACGG AAGAGACGAGCCTGGTCAGAATCTGAGGATGATGAGCCAGTGCAGAGGCCAGTGCAACCT AGCGCAGGCGAGAACGATCTGAGTGATTGA

Peptide Sequence

PEP ID	Os07t0476200-02
PEP Infomation	pep chromosome:IRGSP-1.0:7:17230466:17245273:-1 gene:Os07g0476200 transcript:Os07t0476200-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide TPR-1 domain containing protein. (Os07t0476200-01);Similar to PAF1 complex component. (Os07t0476200-02);Similar to PAF1 complex component. (Os07t0476200-03)
Sequence	MASVYIPVQGTEEEVRVALDQLPADASDILDILKAEQAPLHLWLIIAREYFKQGKIEQFR QILEEGSGPEIDEYYADVKYERIAILNALGAFHTFLGKVERAQQKEVHFKEATQCYNRAS RIDETEPSTWIGRGQLCVVKHDLQMASDSFKIVLDEDGSNFPALLGQASVYFLMGDSEQQ HKKALDYYRNSLDLYKRALRAYTSCPAAVRLGIAFCRYKLGQSDKARQAFQRVLQLDPEN IDALVALAIMDLQTNEAGGIRRGMEKMRRAFEIYPYCTLALNHLANHYFFTGQHFVVEQL TETALSSSNHGLLKSHAFYNLARSYHSKGDIETAGRYYMASVNEISKPQDFVLPFFGLGQ IQLKFADYKSSLASFEKVLEVHPENCESLKAIGHIYAKSGENDKAIETFKKVTRIDPKDH QAFMELGELLVQSDWATAMEYLKTARNLLKKAGEKIPIELLNGIGLLHFEKGELEMAEQS FKEALGDGFWVSIIDGSVGSSVVNWSIQYRDQSFFQQLEEEGTPLELPWDKVTTLFNYAR LFEELHDTVKASLFYRLIIFKYPDYIDTYLRLAAIAKEKNNLQLSIELIGDALKIDDKYP NALSMLGSLELQGDETWLTAKEHFREAKDASEGKDTYSMLQLGNWNYFAANRPEKKAPKF EATHREKAKELYSNVLKQHHGNMFAANGIGILYAEKAQWDIAKELFTQVHEAASGSIFVQ MPDVWINLAHIYFAQGFFQQAVKMYQNCLRKFFYNTDATILLYLARTHYEAEQWQDCRKT LLRAIHLAPSNYLLRFNVGVSMQKFSASTLQKTKRTVDEVRATVSELQNAIRVFSLLSVA STYHSHGFDERKIETHIEYCKHLLDAAKVHRDAAEQAEQQNKQKMEVARQIALADEARRK AEEQRKAQLERRKQEDELKQVMQQEQHFERVKEQWKTSSNTPGKRKDRSKHEDEEGGGEK RRKKGGRRRKDQKTKAHYGEEEEDEYRDEPEAEDDYANTARSNDGGDSEKAPGHLLAAAG LEDSDAEEDDMGHPQSAIERKRRAWSESEDDEPVQRPVQPSAGENDLSD

Transcript Sequence

Transcript ID	Os07t0476200-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:7:17230466:17245273:-1 gene:Os07g0476200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide TPR-1 domain containing protein. (Os07t0476200-01);Similar to PAF1 complex component. (Os07t0476200-02);Similar to PAF1 complex component. (Os07t0476200-03)
Sequence	ACTTAAATTTTCTTCAAAAATAAATCCCCACCTAAACCCGCGTCGCCTCCTCCTCCGCCG CCGTCGCGTCGCCGTCTCCGAGCGCCTCCTCCGCCTCCGCCTCCCCCTCCCCCTCGCGCC GTCGCCGTCGCCGAGCGCCGCCACTTCCGCCCCCGCCTCGTACCCTCATCGCCACGAGCC CCGTTTCGCCCCAAGCCCCCGCACAGATCGGACCCGTGGCGGCGCTCCTCCACCGTCTTA CCCCCGTCCCCCGTGCTACTACTGCGCGCCCAGCCGCCGCAGAGTAGGGCTTCTCCCCCC TGTGGCGGCGGCGGCGGCAGGGGTTCGTAAGGCTGCGGGGAAGATGGCTAGCGTATACAT CCCGGTGCAGGGGACGGAGGAGGAGGTGCGGGTGGCGCTGGACCAGCTCCCCGCCGACGC CTCCGACATCCTCGACATCCTCAAGGCCGAGCAGGCCCCGCTCCACCTCTGGCTCATCAT CGCGAGAGAATACTTCAAGCAAGGAAAGATAGAACAGTTCCGACAGATTCTAGAGGAAGG ATCAGGGCCAGAAATTGATGAATATTATGCTGATGTGAAATATGAGAGAATAGCTATCCT TAATGCTTTGGGCGCTTTCCATACTTTCCTGGGGAAGGTTGAGAGAGCACAACAGAAGGA AGTCCATTTCAAAGAAGCAACTCAATGCTACAATAGGGCATCAAGGATAGATGAAACTGA ACCTTCAACATGGATCGGAAGAGGTCAACTCTGTGTGGTCAAGCACGATTTGCAAATGGC ATCTGATTCATTCAAGATTGTATTGGATGAAGATGGAAGCAATTTTCCAGCTTTACTTGG TCAGGCCTCTGTTTATTTCCTGATGGGTGACTCAGAGCAGCAACACAAGAAAGCTCTGGA CTATTATAGGAACTCACTGGATCTCTATAAGAGAGCCCTGCGGGCCTATACCAGCTGTCC TGCTGCTGTAAGGCTTGGTATAGCATTTTGCCGATACAAACTTGGTCAGTCAGATAAAGC TCGACAAGCTTTTCAACGCGTTCTGCAGTTGGACCCTGAAAATATTGATGCTTTAGTAGC ACTGGCAATCATGGACTTGCAAACAAATGAAGCTGGTGGAATTCGCAGAGGAATGGAGAA AATGAGAAGAGCTTTTGAAATTTATCCTTATTGCACATTGGCACTCAACCACCTAGCAAA CCATTATTTCTTTACTGGCCAGCATTTTGTGGTTGAACAACTGACGGAGACTGCTCTCTC TTCAAGTAATCATGGACTGCTGAAATCACATGCTTTCTATAACTTAGCCAGATCGTACCA CAGTAAGGGTGATATTGAGACTGCTGGAAGGTATTATATGGCATCTGTCAATGAAATCAG TAAGCCACAGGACTTTGTGTTGCCATTCTTTGGACTTGGTCAGATACAATTAAAATTTGC AGACTACAAAAGTTCATTAGCTAGCTTTGAGAAAGTGTTGGAGGTGCACCCAGAAAATTG TGAAAGTTTAAAGGCTATTGGGCACATATATGCAAAGTCAGGTGAGAATGACAAAGCTAT AGAAACCTTCAAGAAGGTTACCCGGATTGATCCAAAAGATCATCAGGCATTTATGGAGCT AGGTGAATTATTGGTACAATCTGATTGGGCTACTGCTATGGAATACTTAAAAACAGCTCG GAATCTCCTAAAGAAGGCAGGAGAGAAAATACCCATTGAATTGCTCAATGGAATTGGACT ACTTCATTTTGAGAAGGGAGAGCTTGAGATGGCTGAACAAAGTTTTAAGGAAGCACTTGG AGATGGCTTTTGGGTTTCAATTATAGATGGCAGTGTAGGTAGCTCCGTGGTTAACTGGAG TATTCAGTATAGGGACCAGAGTTTTTTTCAACAACTTGAAGAAGAGGGAACACCTCTTGA ATTACCTTGGGATAAGGTCACTACATTGTTTAACTATGCAAGATTGTTTGAAGAGCTCCA TGATACTGTGAAAGCCAGTCTCTTTTACCGCCTCATTATTTTCAAGTATCCAGACTACAT TGATACTTATCTTAGGTTAGCAGCTATTGCAAAAGAAAAAAACAATCTCCAACTGAGCAT TGAGCTGATAGGTGATGCTCTAAAGATAGATGATAAGTATCCAAATGCACTTTCTATGCT TGGAAGTCTTGAACTCCAAGGTGATGAAACCTGGCTTACTGCAAAGGAGCATTTCCGTGA AGCTAAAGATGCTTCTGAGGGAAAAGACACATACTCTATGCTTCAATTGGGGAACTGGAA TTACTTTGCTGCTAATCGCCCTGAGAAAAAGGCCCCAAAATTTGAGGCCACTCATAGGGA GAAAGCCAAGGAACTGTATTCAAATGTACTAAAGCAGCACCATGGTAATATGTTTGCTGC AAATGGTATTGGGATCTTATATGCTGAGAAAGCCCAATGGGATATTGCCAAGGAGTTATT TACACAGGTACATGAAGCTGCTTCAGGAAGTATATTTGTCCAGATGCCTGATGTTTGGAT AAATTTGGCTCATATATATTTTGCTCAAGGTTTTTTTCAGCAAGCTGTGAAAATGTACCA AAACTGCCTGCGGAAGTTCTTCTACAACACAGATGCAACTATACTTCTATATCTTGCCCG GACACACTATGAAGCTGAACAATGGCAAGACTGCAGGAAAACATTGCTGAGAGCTATTCA TTTGGCTCCATCAAATTATTTATTGCGATTCAATGTAGGTGTTTCGATGCAGAAATTCTC AGCTTCAACTCTACAGAAGACAAAACGAACAGTTGATGAAGTTCGTGCGACGGTCTCTGA GCTTCAGAATGCTATTAGAGTATTCAGTCTATTGTCTGTTGCATCTACATACCATTCCCA TGGTTTTGATGAGAGAAAAATAGAAACTCATATTGAGTACTGCAAACATTTGCTTGATGC TGCTAAGGTTCATCGTGATGCAGCTGAGCAGGCTGAGCAGCAGAATAAGCAAAAAATGGA AGTTGCTCGACAAATTGCTTTGGCTGATGAAGCTCGCCGCAAGGCTGAAGAACAGAGGAA GGCCCAGTTAGAAAGAAGGAAGCAAGAGGACGAGCTAAAGCAAGTAATGCAACAGGAGCA ACACTTTGAGCGTGTCAAGGAGCAATGGAAAACCTCAAGTAACACTCCTGGCAAGAGAAA AGATAGGTCTAAGCATGAAGATGAAGAGGGGGGAGGTGAAAAGAGGAGGAAGAAGGGTGG TAGGAGAAGGAAGGATCAGAAGACAAAGGCACACTATGGGGAAGAGGAAGAAGACGAATA TAGAGATGAACCAGAAGCAGAAGATGATTATGCAAACACGGCGAGGAGTAACGATGGTGG CGATTCAGAGAAAGCCCCAGGTCACCTTCTTGCTGCTGCAGGTCTTGAAGATTCTGATGC TGAAGAAGATGACATGGGACACCCTCAATCTGCCATAGAACGGAAGAGACGAGCCTGGTC AGAATCTGAGGATGATGAGCCAGTGCAGAGGCCAGTGCAACCTAGCGCAGGCGAGAACGA TCTGAGTGATTGAATTAGACGGTGAAGATTATGGCCGAATTTGGGATCACTTCATATATT TGTGACGAAGAATGGCTCCTGGGATGCGGAATCAACTATAGGGCGTGCTCATATGCACTT GTGGATAATTCGATGTTGAAATGGAGCTCAGACAGATGGTTGAACCAGAAGTGTTAAAAA AATTTATCTGGGAGCAGAGCAGTCACTGATATTCAACAATTAATCTCGCGTCATTCTAGA CATGCCATGGGTTGGTGGAGCTAACATAAGGCAATTTGTAATTTATGTCTAGTTTACGCT TAATCAGCCAGACTTTTGTCCTGTGAGCTTCTAACGCTGTACCAATTTTAGCTCACTTAC ATCTCAGGATAGCTGATCT