Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os07t0442900-01
CDS Infomation

cds chromosome:IRGSP-1.0:7:14988874:14990789:1 gene:Os07g0442900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Uncharacterised protein family UPF0497, trans-membrane plant subgroup domain containing protein. (Os07t0442900-01)
Sequence

ATGGCCACCGTGGATGGCACAACGGCGCCGAGCTCCGGCGGCAAGACGGCGACGGTGGCG
TTGGAGTCGGGCGGCGGCCGCTACGGTGGGCCGGCTCCGGCGAAATGCTCCGGCGCCAAC
CTGGCCCTGAGGGCGCTGCTCTTCGCCGTGTCGCTGTCCGCGCTCGTGGTGCTTGTCACC
GCCAAGCAGACGGTGATGGTCCCGTTCGTCATCCGGCCGCCGCAGTTCATCCTCGCGCCG
GTCCCCGCCAAGTACACGCACTCACCGGCGCTCATATATCTGCTGGCTGCGCTGTGCGCG
ACGTGCTTTTACAGCCTGATCACGGCCATCAGCTCGGTGAGGTTGCTCTCCAGCTCGGCT
TGCTCTGCCAAGACGCTCTTCTACCTCATCCTGCTTGATGTGTTCTACGCAGCCGTGATG
GCGTCGGCGACCGGGACAGCGGGGGCCGTGGCGTGGGTGGGACTGAAGGGGAACTCCCAC
ACCCGGTGGAACAAGATATGCAACGTCTACGGCAAGTTCTGCCGCCACATCGGCAGCTCC
ACCTTCCTCGCCCTCATCGCCGCCATCGTTCTCGTCCTCCTCGCCTTCCTCAACGCCTAC
TCCCTCTACCGCCGAAGCCGTTGA

Peptide Sequence

PEP ID

Os07t0442900-01
PEP Infomation

pep chromosome:IRGSP-1.0:7:14988874:14990789:1 gene:Os07g0442900 transcript:Os07t0442900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Uncharacterised protein family UPF0497, trans-membrane plant subgroup domain containing protein. (Os07t0442900-01)
Sequence

MATVDGTTAPSSGGKTATVALESGGGRYGGPAPAKCSGANLALRALLFAVSLSALVVLVT
AKQTVMVPFVIRPPQFILAPVPAKYTHSPALIYLLAALCATCFYSLITAISSVRLLSSSA
CSAKTLFYLILLDVFYAAVMASATGTAGAVAWVGLKGNSHTRWNKICNVYGKFCRHIGSS
TFLALIAAIVLVLLAFLNAYSLYRRSR

Transcript Sequence

Transcript ID

Os07t0442900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:7:14988874:14990789:1 gene:Os07g0442900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Uncharacterised protein family UPF0497, trans-membrane plant subgroup domain containing protein. (Os07t0442900-01)
Sequence

AACTAACTGTCCGTGTGCGAGTTGCGACCTTGCTGGAAAACTTGTACCTAGAGCTAGCTG
AAGGAAGCAATATGGCCACCGTGGATGGCACAACGGCGCCGAGCTCCGGCGGCAAGACGG
CGACGGTGGCGTTGGAGTCGGGCGGCGGCCGCTACGGTGGGCCGGCTCCGGCGAAATGCT
CCGGCGCCAACCTGGCCCTGAGGGCGCTGCTCTTCGCCGTGTCGCTGTCCGCGCTCGTGG
TGCTTGTCACCGCCAAGCAGACGGTGATGGTCCCGTTCGTCATCCGGCCGCCGCAGTTCA
TCCTCGCGCCGGTCCCCGCCAAGTACACGCACTCACCGGCGCTCATATATCTGCTGGCTG
CGCTGTGCGCGACGTGCTTTTACAGCCTGATCACGGCCATCAGCTCGGTGAGGTTGCTCT
CCAGCTCGGCTTGCTCTGCCAAGACGCTCTTCTACCTCATCCTGCTTGATGTGTTCTACG
CAGCCGTGATGGCGTCGGCGACCGGGACAGCGGGGGCCGTGGCGTGGGTGGGACTGAAGG
GGAACTCCCACACCCGGTGGAACAAGATATGCAACGTCTACGGCAAGTTCTGCCGCCACA
TCGGCAGCTCCACCTTCCTCGCCCTCATCGCCGCCATCGTTCTCGTCCTCCTCGCCTTCC
TCAACGCCTACTCCCTCTACCGCCGAAGCCGTTGATTCATTCCCCATGAACTTGTTTGCT
GCCGCCGCCCCCGGACCGTAGAGTTGCTTGCTTCCGTCGTCGCATCGACCGTCCGTGTGT
GGATGGATTCTTGTGTTTAATTAGTTTTTGTCCCTAAGTGTTTGAAACATTTGGGTGGTG
TGATGTTTTTTTAGTGCTTGCCGGCCGTATATGTTAGCTGTTGTCTCACATCTCCGGAAA
TTCAACGTTATCCTCTCAGTGATATATAATGTTTCATGGTTGAACT